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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/group__dataspec__GenBank__General.html below:

Code generated by DATATOOL from 'seqblock.asn' (module 'GenBank-General')

◆ TDate ◆ TDiv ◆ TEntry_date ◆ TExtra_accessions ◆ TKeywords ◆ TmemberIndex ◆ TOrigin ◆ Tparent ◆ TSource ◆ TTaxonomy ◆ E_memberIndex Enumerator e__allMandatory  e_extra_accessions  e_source  e_keywords  e_origin  e_date  e_entry_date  e_div  e_taxonomy 

Definition at line 101 of file GB_block_.hpp.

◆ CanGetDate() bool CGB_block_Base::CanGetDate ( void  ) const inline ◆ CanGetDiv() bool CGB_block_Base::CanGetDiv ( void  ) const inline ◆ CanGetEntry_date() bool CGB_block_Base::CanGetEntry_date ( void  ) const inline ◆ CanGetExtra_accessions() bool CGB_block_Base::CanGetExtra_accessions ( void  ) const inline

Check if it is safe to call GetExtra_accessions method.

Returns

Definition at line 448 of file GB_block_.hpp.

◆ CanGetKeywords() bool CGB_block_Base::CanGetKeywords ( void  ) const inline ◆ CanGetOrigin() bool CGB_block_Base::CanGetOrigin ( void  ) const inline ◆ CanGetSource() bool CGB_block_Base::CanGetSource ( void  ) const inline ◆ CanGetTaxonomy() bool CGB_block_Base::CanGetTaxonomy ( void  ) const inline ◆ CGB_block_Base() [1/2] ◆ CGB_block_Base() [2/2] ◆ DECLARE_INTERNAL_TYPE_INFO() CGB_block_Base::DECLARE_INTERNAL_TYPE_INFO ( ) ◆ GetDate() ◆ GetDiv()

Get the Div member data.

Returns
Reference to the member data.

Definition at line 666 of file GB_block_.hpp.

References CGB_block_Base::CanGetDiv(), CGB_block_Base::m_Div, and CSerialObject::ThrowUnassigned().

Referenced by CheckDivCode(), CheckGBBlock(), fta_fix_orgref_div(), CFindASN1Dlg::ReplaceInDesc(), CAddSecondary::TransferDataToWindow(), CNewCleanup_imp::x_CleanupGenbankBlock(), x_GetDivisionProc(), x_GetDivisionProcIdx(), CNewCleanup_imp::x_IsGenbankBlockEmpty(), and CNewCleanup_imp::x_SetMolInfoTechFromGenBankBlock().

◆ GetEntry_date() ◆ GetExtra_accessions() ◆ GetKeywords()

Get the Keywords member data.

Returns
Reference to the member data.

Definition at line 526 of file GB_block_.hpp.

References CGB_block_Base::m_Keywords.

Referenced by CClearKeywords::ApplyToCSeq_entry(), BOOST_AUTO_TEST_CASE(), CheckGBBlock(), CNewCleanup_imp::GBblockBC(), CAutoDef::GetKeywordPrefix(), CGenbankKeywordField::GetVals(), CGBBlockField::GetVals(), CValidError_bioseq::IsHistAssemblyMissing(), CSGSequenceDS::IsRefSeqGene(), variation::IsRefSeqGene(), s_DetermineComponentType(), s_IsRefSeqGene(), CGBBlockField::SetVal(), CGenbankKeywordField::SetVal(), CValidError_bioseq::ValidateMolInfoContext(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), CBioseqIndex::x_InitDescs(), CNewCleanup_imp::x_IsGenbankBlockEmpty(), CDeflineGenerator::x_SetFlags(), and CFlatGatherer::x_UnorderedComments().

◆ GetOrigin() ◆ GetSource() ◆ GetTaxonomy() ◆ IsSetDate() bool CGB_block_Base::IsSetDate ( void  ) const inline ◆ IsSetDiv() bool CGB_block_Base::IsSetDiv ( void  ) const inline

GenBank division Check if a value has been assigned to Div data member.

Data member Div is optional; its type is defined as 'typedef string TDiv'

Returns

Definition at line 654 of file GB_block_.hpp.

References CGB_block_Base::m_set_State.

Referenced by CGB_block_Base::CanGetDiv(), CheckDivCode(), CheckGBBlock(), fta_fix_orgref_div(), CGenbankKeywordField::IsEmpty(), CGB_block::IsEmpty(), CFindASN1Dlg::ReplaceInDesc(), CGB_block_Base::SetDiv(), CAddSecondary::TransferDataToWindow(), CNewCleanup_imp::x_CleanupGenbankBlock(), CNewCleanup_imp::x_IsGenbankBlockEmpty(), and CNewCleanup_imp::x_SetMolInfoTechFromGenBankBlock().

◆ IsSetEntry_date() bool CGB_block_Base::IsSetEntry_date ( void  ) const inline ◆ IsSetExtra_accessions() bool CGB_block_Base::IsSetExtra_accessions ( void  ) const inline

Check if a value has been assigned to Extra_accessions data member.

Data member Extra_accessions is optional; its type is defined as 'typedef list< string > TExtra_accessions'

Returns

Definition at line 442 of file GB_block_.hpp.

References CGB_block_Base::m_set_State.

Referenced by CheckGBBlock(), CGBBlockField::GetVals(), CGenbankKeywordField::IsEmpty(), CGB_block::IsEmpty(), CFindASN1Dlg::ReplaceInDesc(), CGBBlockField::SetVal(), CAddSecondary::TransferDataToWindow(), CValidError_bioseq::ValidateSecondaryAccConflict(), CNewCleanup_imp::x_IsGenbankBlockEmpty(), and x_IsWgsSecondary().

◆ IsSetKeywords() bool CGB_block_Base::IsSetKeywords ( void  ) const inline

Check if a value has been assigned to Keywords data member.

Data member Keywords is optional; its type is defined as 'typedef list< string > TKeywords'

Returns

Definition at line 514 of file GB_block_.hpp.

References CGB_block_Base::m_set_State.

Referenced by CClearKeywords::ApplyToCSeq_entry(), BOOST_AUTO_TEST_CASE(), CheckGBBlock(), CNewCleanup_imp::GBblockBC(), CAutoDef::GetKeywordPrefix(), CGenbankKeywordField::GetVals(), CGBBlockField::GetVals(), CGenbankKeywordField::IsEmpty(), CGB_block::IsEmpty(), CValidError_bioseq::IsHistAssemblyMissing(), CFindASN1Dlg::ReplaceInDesc(), s_IsRefSeqGene(), CGBBlockField::SetVal(), CGenbankKeywordField::SetVal(), CAddSecondary::TransferDataToWindow(), CValidError_bioseq::ValidateMolInfoContext(), CNewCleanup_imp::x_CleanGenbankKeywords(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), CBioseqIndex::x_InitDescs(), CValidError_bioseq::x_IsActiveFin(), CNewCleanup_imp::x_IsGenbankBlockEmpty(), and CDeflineGenerator::x_SetFlags().

◆ IsSetOrigin() bool CGB_block_Base::IsSetOrigin ( void  ) const inline

Check if a value has been assigned to Origin data member.

Data member Origin is optional; its type is defined as 'typedef string TOrigin'

Returns

Definition at line 539 of file GB_block_.hpp.

References CGB_block_Base::m_set_State.

Referenced by CGB_block_Base::CanGetOrigin(), CheckGBBlock(), CGenbankKeywordField::IsEmpty(), CGB_block::IsEmpty(), CFindASN1Dlg::ReplaceInDesc(), CGB_block_Base::SetOrigin(), CAddSecondary::TransferDataToWindow(), CAutogeneratedCleanup::x_BasicCleanupGBBlock(), CAutogeneratedExtendedCleanup::x_ExtendedCleanupGBBlock(), and CNewCleanup_imp::x_IsGenbankBlockEmpty().

◆ IsSetSource() bool CGB_block_Base::IsSetSource ( void  ) const inline

source line Check if a value has been assigned to Source data member.

Data member Source is optional; its type is defined as 'typedef string TSource'

Returns

Definition at line 467 of file GB_block_.hpp.

References CGB_block_Base::m_set_State.

Referenced by CGB_block_Base::CanGetSource(), CheckGBBlock(), CGenbankKeywordField::IsEmpty(), CGB_block::IsEmpty(), CFindASN1Dlg::ReplaceInDesc(), CGB_block_Base::SetSource(), CAddSecondary::TransferDataToWindow(), CNewCleanup_imp::x_CleanupGenbankBlock(), and CNewCleanup_imp::x_IsGenbankBlockEmpty().

◆ IsSetTaxonomy() bool CGB_block_Base::IsSetTaxonomy ( void  ) const inline ◆ operator=() ◆ Reset() void CGB_block_Base::Reset ( void  ) virtual ◆ ResetDate() void CGB_block_Base::ResetDate ( void  ) ◆ ResetDiv() void CGB_block_Base::ResetDiv ( void  ) ◆ ResetEntry_date() void CGB_block_Base::ResetEntry_date ( void  ) ◆ ResetExtra_accessions() void CGB_block_Base::ResetExtra_accessions ( void  ) ◆ ResetKeywords() void CGB_block_Base::ResetKeywords ( void  ) ◆ ResetOrigin() void CGB_block_Base::ResetOrigin ( void  ) ◆ ResetSource() void CGB_block_Base::ResetSource ( void  ) ◆ ResetTaxonomy() void CGB_block_Base::ResetTaxonomy ( void  ) ◆ SetDate() [1/3] void CGB_block_Base::SetDate ( const TDate &  value ) inline ◆ SetDate() [2/3] ◆ SetDate() [3/3] ◆ SetDiv() [1/3] void CGB_block_Base::SetDiv ( const TDiv &  value ) inline ◆ SetDiv() [2/3] ◆ SetDiv() [3/3] ◆ SetEntry_date() [1/2] ◆ SetEntry_date() [2/2] ◆ SetExtra_accessions() ◆ SetKeywords()

Assign a value to Keywords data member.

Returns
Reference to the data value.

Definition at line 532 of file GB_block_.hpp.

References CGB_block_Base::m_Keywords, and CGB_block_Base::m_set_State.

Referenced by CAddStructuredCommentKeyword::add_to_existing_genbank(), AddGenbankKeyword(), CRemoveStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), CAddStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), CheckGBBlock(), CNewCleanup_imp::GBblockBC(), CAddSecondary::GetCommand(), CBarcodeTool::OnAddKeyword(), CFindASN1Dlg::ReplaceInDesc(), CGBBlockField::SetVal(), CGenbankKeywordField::SetVal(), CEditingActionDescKeyword::SetValue(), and CNewCleanup_imp::x_CleanGenbankKeywords().

◆ SetOrigin() [1/3] ◆ SetOrigin() [2/3] ◆ SetOrigin() [3/3] ◆ SetSource() [1/3] ◆ SetSource() [2/3] ◆ SetSource() [3/3] ◆ SetTaxonomy() [1/3] ◆ SetTaxonomy() [2/3] ◆ SetTaxonomy() [3/3] ◆ ~CGB_block_Base() CGB_block_Base::~CGB_block_Base ( void  ) virtual

Definition at line 146 of file GB_block_.cpp.

◆ m_Date ◆ m_Div ◆ m_Entry_date ◆ m_Extra_accessions list< string > CGB_block_Base::m_Extra_accessions private ◆ m_Keywords list< string > CGB_block_Base::m_Keywords private ◆ m_Origin string CGB_block_Base::m_Origin private ◆ m_set_State Uint4 CGB_block_Base::m_set_State[1] private

Definition at line 421 of file GB_block_.hpp.

Referenced by CGB_block_Base::CGB_block_Base(), CGB_block_Base::IsSetDate(), CGB_block_Base::IsSetDiv(), CGB_block_Base::IsSetExtra_accessions(), CGB_block_Base::IsSetKeywords(), CGB_block_Base::IsSetOrigin(), CGB_block_Base::IsSetSource(), CGB_block_Base::IsSetTaxonomy(), CGB_block_Base::ResetDate(), CGB_block_Base::ResetDiv(), CGB_block_Base::ResetExtra_accessions(), CGB_block_Base::ResetKeywords(), CGB_block_Base::ResetOrigin(), CGB_block_Base::ResetSource(), CGB_block_Base::ResetTaxonomy(), CGB_block_Base::SetDate(), CGB_block_Base::SetDiv(), CGB_block_Base::SetExtra_accessions(), CGB_block_Base::SetKeywords(), CGB_block_Base::SetOrigin(), CGB_block_Base::SetSource(), and CGB_block_Base::SetTaxonomy().

◆ m_Source string CGB_block_Base::m_Source private ◆ m_Taxonomy string CGB_block_Base::m_Taxonomy private

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