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NCBI C++ ToolKit: String Manipulations

Definition at line 182 of file ncbistr.hpp.

Definition at line 180 of file ncbistr.hpp.

Definition at line 179 of file ncbistr.hpp.

Definition at line 294 of file tempstr.hpp.

Definition at line 293 of file tempstr.hpp.

template<class TStr , class TV , class TP = CStrDummyTokenPos, class TCount = CStrDummyTokenCount, class TReserve = CStrDummyTargetReserve<TV, TP>>

Definition at line 230 of file ncbistr_util.hpp.

template<class TStr , class TV , class TP = CStrDummyTokenPos, class TCount = CStrDummyTokenCount, class TReserve = CStrDummyTargetReserve<TV, TP>>

Definition at line 232 of file ncbistr_util.hpp.

Bitwise OR of "ENumToStringFlags".

Definition at line 266 of file ncbistr.hpp.

template<class TStr , class TV , class TP = CStrDummyTokenPos, class TCount = CStrDummyTokenCount, class TReserve = CStrDummyTargetReserve<TV, TP>>

Definition at line 231 of file ncbistr_util.hpp.

Bitwise OR of EPrintableMode flags.

Definition at line 2738 of file ncbistr.hpp.

template<class TStr , class TV , class TP = CStrDummyTokenPos, class TCount = CStrDummyTokenCount, class TReserve = CStrDummyTargetReserve<TV, TP>>

Definition at line 233 of file ncbistr_util.hpp.

template<class TStr , class TV , class TP = CStrDummyTokenPos, class TCount = CStrDummyTokenCount, class TReserve = CStrDummyTargetReserve<TV, TP>>

Definition at line 229 of file ncbistr_util.hpp.

Bitwise OR of "EStringToNumFlags".

Definition at line 311 of file ncbistr.hpp.

template<class TContainer >

template<class TContainer >

Case sensitive compare.

Case insensitive compare.

Definition at line 222 of file ncbi_xstr.hpp.

Which type of string comparison.

Case sensitive compare.

Case insensitive compare.

Definition at line 1204 of file ncbistr.hpp.

Flags for Dedent() method.

Each line containing only whitespace will be normalized to a single newline character in the output.

Such lines are excluded from detecting common whitespace prefix.

Ignore first line and skip it from the result.

Ignore first line and skip it from the result, if it is empty only.

Definition at line 3409 of file ncbistr.hpp.

Search direction for Find() methods.

Search in a forward direction.

Search in a backward direction.

Definition at line 1945 of file ncbistr.hpp.

Note: From the point of view of the C++.

Toolkit, the ISO 8859-1 character set includes symbols 0x00 through 0xFF except 0x80 through 0x9F.

Definition at line 199 of file ncbistr.hpp.

Error types that string classes can generate.

Failure to convert string.

Bad arguments to string methods.

Wrong format for any input to string methods.

Definition at line 4503 of file ncbistr.hpp.

C-style escape sequences parsing mode.

For escape sequences with a value outside the range of [0-255] the behavior of ParseEscapes() depends from this mode. By default all escape sequences within a out or range will be converted to the least significant byte, with no warning.

Set char to the last (least significant byte) of the escape sequence (default).

Set char to the first byte of the escape sequence.

Throw an exception.

Set errno to ERANGE, return empty string.

Set char to the user value passed in another parameter.

Definition at line 2940 of file ncbistr.hpp.

HTML-decode flags.

Character entity reference(s) was found.

Numeric character reference(s) was found.

Character encoding changed.

Definition at line 3068 of file ncbistr.hpp.

HTML-decode flags.

Encode all symbols.

Skip "&entity;".

Skip "&#NNNN;".

Print warning if some pre-encoded entity found in the string.

Definition at line 3049 of file ncbistr.hpp.

Whether to merge adjacent delimiters.

Used by some methods that don't need full functionality of ESplitFlags.

Definition at line 2516 of file ncbistr.hpp.

Definition at line 54 of file ncbi_strings.h.

Number to string conversion flags.

NOTE: If specified base in the *ToString() methods is not default 10, that some flags like fWithSign and fWithCommas will be ignored.

Use lowercase letters for string representation for bases above 10.

Prefix the output value with radix for "well-known" bases like 8 ("0") and 16 ("0x")

Prefix the output value with a sign ('+'/'-')

Use commas as thousands separator.

DoubleToString*(): Use n.nnnn format for double conversions.

DoubleToString*(): Use scientific format for double conversions.

DoubleToString*(): Use C locale for double conversions.

UInt8ToString_DataSize(): Use 1024 as a kilobyte factor, not 1000.

UInt8ToString_DataSize(): Do not add a decimal point ("10KB" vs "10.0KB")

UInt8ToString_DataSize(): Add space between value and qualifiers, like "10.0 KB".

UInt8ToString_DataSize(): Use short suffix, like "10.0K".

UInt8ToString_DataSize(): Use "B" suffix for small bytes values.

Definition at line 250 of file ncbistr.hpp.

Whether it is the first or last occurrence.

Deprecated:

First occurrence.

Last occurrence.

Definition at line 1939 of file ncbistr.hpp.

How to display printable strings.

Assists in making a printable version of "str".

Display "\n" instead of actual linebreak.

Break the line at every "\n" occurrence.

Allow non-ASCII but printable characters.

Octal for all non-ASCII characters.

Show all octal digits at all times.

Definition at line 2729 of file ncbistr.hpp.

Define that string is quoted or not.

String is quoted.

String is not quoted.

Definition at line 2989 of file ncbistr.hpp.

Flags for Split*() methods.

Note

With quote support enabled, doubling a quote character suppresses its special meaning, as does escaping it if that's enabled too; unescaped trailing backslashes and unbalanced quotes result in exceptions.

All escape symbols, single or double quotes became removed if a corresponding fSplit_Can* flag is used.

Merge adjacent delimiters.

Truncate leading delimiters.

Truncate trailing delimiters.

Require full delimiter strings.

Allow \... escaping.

Allow '...' quoting.

Allow "..." quoting.

All delimiters are merged and trimmed, to get non-empty tokens only.

Definition at line 2499 of file ncbistr.hpp.

SQL encode flags.

Always produce '...', with no tag.

Produce N'...' when input's not pure ASCII.

Definition at line 3168 of file ncbistr.hpp.

Flags for Sanitize().

Check on isalpha()

Check on isdigit()

Check on isalnum()

Check on isprint()

Check on iscntrl()

Check on ispunct()

Reject specified characters, allow all other.

Revert default behavior, that allow specified characters and reject all other.

Remove (rather than replace) rejected chars.

Do not merge adjacent spaces (rejected chars)

Do not truncate leading spaces.

Do not truncate trailing spaces.

Definition at line 2835 of file ncbistr.hpp.

String to number conversion flags.

Do not throw an exception on error.

Could be used with methods throwing an exception by default, ignored otherwise. Just return zero and set errno to non-zero instead of throwing an exception. We recommend the following technique to check against errors with minimum overhead when this flag is used:

if (!retval && errno != 0)

ERROR;

And for StringToDouble*() variants:

if (retval == HUGE_VAL || retval == -HUGE_VAL ||

!retval && errno != 0)

ERROR;

Set errno, but do not set CNcbiError message on error.

Check on mandatory sign. See 'ENumToStringFlags::fWithSign'.

Allow commas. See 'ENumToStringFlags::fWithCommas'.

Ignore leading whitespace characters in converted string.

Ignore leading non-numeric characters.

Ignore trailing whitespace characters.

Ignore trailing non-numerics characters.

StringToDouble*(): For decimal point, use C locale.

StringToDouble*(): For decimal point, try both C and current locale.

StringToDouble*(): Keep result finite and normalized: if DBL_MAX < result < INF, result becomes DBL_MAX if 0 < result < DBL_MIN, result becomes DBL_MIN.

StringToUInt8_DataSize(): Use 1024 as a kilobyte factor regardless of suffix, like "KB" or "KiB".

StringToUInt8_DataSize(): Ignore any fraction part of a value, "1.2K" ~ "1K".

StringToUInt8_DataSize(): Do not allow spaces between value and suffix, like "10 K".

Definition at line 269 of file ncbistr.hpp.

Which end to truncate a string.

Truncate leading whitespace only.

Truncate trailing whitespace only.

Truncate whitespace at both begin and end of string.

Definition at line 2239 of file ncbistr.hpp.

URL decode flags.

Decode '+' to space.

Decode only XX.

Definition at line 3159 of file ncbistr.hpp.

URL-encode flags.

Do not convert chars like '!', '(' etc.

Convert all non-alphanumeric chars, spaces are converted to '+'.

Convert all non-alphanumeric chars including space and '' to %## format.

Same as ProcessMarkChars but preserves valid path characters ('/', '.')

Encode scheme part of an URI.

Encode userinfo part of an URI.

Encode host part of an URI.

Encode path part of an URI.

Encode query part of an URI, arg name.

Encode query part of an URI, arg value.

Encode fragment part of an URI.

Same as SkipMarkChars with encoded ','.

Do not encode.

Definition at line 3143 of file ncbistr.hpp.

How to verify character encoding of the source data.

Definition at line 3870 of file ncbistr.hpp.

How to wrap the words in a string to a new line.

Add a hyphen when breaking words?

Wrap as pre-formatted HTML?

Wrap for flat file use.

Definition at line 3229 of file ncbistr.hpp.

XML-encode flags.

Encode predefined entities only.

Encode double hyphen and ending hyphen, making the result safe to put into XML comments.

Check each character to conform XML 1.1 standards, skip any not allowed character or throw an CStringException.

https://www.w3.org/TR/xml11/#NT-Char

Definition at line 3027 of file ncbistr.hpp.

For compatibility with older code.

Definition at line 913 of file tempstr.hpp.

template<size_t num_prealloc, typename TIn , typename TOut >

Convert non-Unicode character into UTF8 and append it to existing string.

Parameters

dest Existing UTF8 string ch Character lcl Character locale return reference to modified dest string

Definition at line 4052 of file ncbistr.hpp.

References CUtf8::x_Append().

Convert non-Unicode character into UTF8 and append it to existing string.

Parameters

dest Existing UTF8 string ch Character encoding Character encoding validate Verify the character encoding of the source return reference to modified dest string

Definition at line 4033 of file ncbistr.hpp.

References validate(), and CUtf8::x_Append().

template<typename TChar >

Convert Unicode C++ string into UTF8 and append it to existing string.

Parameters

dest Existing UTF8 string src Source Unicode string return reference to modified dest string

Definition at line 3944 of file ncbistr.hpp.

References CUtf8::x_Append().

Convert non-Unicode C++ string into UTF8 and append it to existing string.

Parameters

dest Existing UTF8 string src Source string lcl Source string locale return reference to modified dest string

Definition at line 4013 of file ncbistr.hpp.

References CUtf8::x_Append().

Convert non-Unicode C++ string into UTF8 and append it to existing string.

Parameters

dest Existing UTF8 string src Source string encoding Character encoding of the source string validate Verify the character encoding of the source return reference to modified dest string

Definition at line 3994 of file ncbistr.hpp.

References validate(), and CUtf8::x_Append().

template<typename TChar >

Convert Unicode character buffer into UTF8 and append it to existing string.

Parameters

dest Existing UTF8 string src Source Unicode character buffer tchar_count Number of characters in the buffer; If it equals to NPOS, buffer is assumed to be zero-terminated return reference to modified dest string

Definition at line 3962 of file ncbistr.hpp.

References CUtf8::x_Append().

template<typename TChar >

Convert Unicode symbol into UTF8 and append it to existing string.

Parameters

dest Existing UTF8 string ch Unicode symbol return reference to modified dest string

Definition at line 3977 of file ncbistr.hpp.

References CUtf8::x_Append().

template<typename TChar >

template<typename TChar >

Convert UTF8 string into Unicode.

Can throw a CStringException if the conversion is impossible or the string has invalid UTF-8 encoding.

Parameters

src Source UTF8 string substitute_on_error If the conversion is impossible, append the provided string or, if substitute_on_error equals 0, throw an exception validate Verify UTF8 character encoding of the source

Attention

Only for TStringUnicode, TStringUCS4, TStringUCS2, wstring types

Definition at line 4102 of file ncbistr.hpp.

References validate(), and CUtf8::x_AsBasicString().

Assign new values to the content of the a string.

Definition at line 733 of file tempstr.hpp.

References len, CTempString::m_Length, CTempString::m_String, NCBI_TEMPSTR_DESTROY_COPY, and NCBI_TEMPSTR_MAKE_COPY.

Referenced by SAccGuide::AddRule(), CTempStringEx::assign(), CTL_Cmd::AssignCmdParam(), CGRPCServerCallbacks::BeginRequest(), CGapsEditor::ConvertNs2Gaps(), CExtraEncoder::Encode(), CDB_String::GetBulkInsertionData(), CBamHeader::GetSBamRecords(), CDBParamVariant::MakeName(), CDBParamVariant::MakePlainName(), CAttrListParser::NextAttribute(), CTempString::operator=(), SHTTP_StatusData::Parse(), CNetServProtoParserBase::ParseCommand(), CPrintJobInfo::PrintXput(), CSrvSocketTask::ReadLine(), CRegexpUtil::Replace(), s_ParseFuncName(), CNCBlobKeyLight::UnpackBlobKey(), ICitationBase::x_GetLabelV1(), CPubseqGatewayApp::x_GetParam(), CNetServProtoParserBase::x_GetToken(), and CFastaOstream::x_WriteSequence().

template<class Arg1 , class Arg2 , class Pred >

Check equivalence of arguments using predicate.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 5031 of file ncbistr.hpp.

Referenced by CCgiRequest::CalcChecksum(), FastStringToBool(), CCgiCookies::Find(), CAssemblyTermCompleter::GetNext(), CRNANameCompleter::GetNext(), CTaxonTextCompleter::GetNext(), CCgiRequest::GetRequestMethod(), CId_pat::Id_Match(), CNcbiCommand::IsRequested(), CCgiApplication::LogRequest(), CId_pat::Match(), PFindByName< T >::operator()(), CAssemblyTermCompleter::Start(), and CCgiRequest::x_ProcessInputStream().

template<typename TChar >

Convert into UTF8 from a Unicode C++ string.

Parameters

Attention

Only for TStringUnicode, TStringUCS4, TStringUCS2, wstring types

Definition at line 3913 of file ncbistr.hpp.

References CUtf8::x_Append().

Convert into UTF8 from a C/C++ string.

Parameters

src Source string encoding Character encoding of the source string validate Verify the character encoding of the source

Definition at line 3883 of file ncbistr.hpp.

References validate(), and CUtf8::x_Append().

Referenced by CReadUtil::AddGeneOntologyTerm(), CSplignFormatter::AsSeqAlignSet(), CTL_Cmd::AssignCmdParam(), pythonpp::CString::AsStdSring(), CStringDataType::CreateDefault(), CNcbiSample_Dbapi_Simple::DemoDynamicSql(), CSdbapiSimpleApp::DemoDynamicSql(), CSubSource::FixLatLonFormat(), CSQLITE_Statement::GetColumnName(), CODBC_Connection::GetDriverName(), CLastErrorAdapt::GetErrCodeString(), CODBC_Connection::GetVersionString(), CHTMLHelper::HTMLDecode(), operator+(), CArgDesc::PrintXml(), CObjectIStreamAsn::ReadAnyContentObject(), CObjectIStreamJson::ReadAnyContentObject(), CObjectIStreamXml::ReadAnyContentObject(), CObjectIStreamJson::ReadEncodedChar(), ReadIntoUtf8(), CObjectIStreamXml::ReadString(), CCleanup::s_CleanupStructuredComment(), s_ConvertValue(), s_SetContainerData(), s_SetPrimitiveData(), s_WriteXmlLine(), pythonpp::bind::CString::SetInternal(), CSerialObject::UnassignedStringUTF8(), utf8_to_string(), CObjectOStreamJson::WriteEncodedChar(), CObjectOStreamXml::WriteEncodedChar(), CDB_Stream::x_Append(), CSourceModParser::x_ApplyTPAMods(), CSplitDblinkQuals::x_ConvertStrToStrs(), CStatementBase::x_GetData(), CUtf8::x_GetValidSymbolCount(), CWString::x_MakeString(), x_MakeTSqlString(), CWString::x_MakeUTF8String(), CObjectIStreamXml::x_ReadEncodedChar(), CFeaturePanel::x_SaveSettings(), CDescrModApply::x_SetTpaAssembly(), and CWString::x_StringToUTF8().

template<typename TChar >

Convert into UTF8 from a Unicode character buffer.

Parameters

src Source character buffer tchar_count Number of characters in the buffer; If it equals to NPOS, buffer is assumed to be zero-terminated

Definition at line 3928 of file ncbistr.hpp.

References CUtf8::x_Append().

Return an iterator to the string's starting position.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 299 of file tempstr.hpp.

References CTempString::m_String.

Referenced by BOOST_AUTO_TEST_CASE(), CEndpointKey::CEndpointKey(), CSeq_id::CheckLocalID(), CSourceModParser::CompareKeys(), CTempString::Copy(), CTempString::find(), CTempString::find_first_not_of(), CTempString::find_first_of(), CTempString::find_last_not_of(), CTempString::find_last_of(), CRemoveDbXrefTreeItemData::GetFunction(), CUtf8::GetValidBytesCount(), CForeignContaminationScreenReportReader::LoadFile(), CMemoryLineReader::operator*(), CBufferedLineReader::operator*(), CMemoryLineReader::operator++(), CBufferedLineReader::operator++(), CWigBufferedLineReader::operator++(), CMemoryLineReader::PeekChar(), CBufferedLineReader::PeekChar(), CTempString::rfind(), CGff2Record::TokenizeGFF(), CMemoryLineReader::UngetLine(), CBufferedLineReader::UngetLine(), CWigBufferedLineReader::UngetLine(), CDB_Numeric::x_MakeFromString(), CFeatureTableReader_Imp::x_TokenizeLenient(), and CFeatureTableReader_Imp::x_TokenizeStrict().

Convert bool to string.

Parameters

value Boolean value to be converted.

Returns

One of: 'true, 'false'

Note

Don't change errno.

Definition at line 2806 of file ncbistr.cpp.

Referenced by CReportParams::Add(), CPluginArgSet::AddDefaultFlag(), BOOST_AUTO_TEST_CASE(), CNcbiApplogApp::Cmd_Health(), SQueueParameters::ConfigSection(), CRegistryReadView::DumpAll(), CMacroAdvStringConstraintPanel< T >::GetFuncWithArgs(), CGuiObjectInfoSeq_align::GetLinks(), CQueueParamAccessor::GetParamValue(), SQueueParameters::GetPrintableParameters(), CGeneModelFactory::GetSettings(), CVariant::GetString(), CMacroAdvStringConstraintPanel< T >::GetTextConstraint(), NMItemData::GetUpdatemRNAVar(), CAddAssemblyGapsNTreeItemData::GetVariables(), CAddGapsNTreeItemData::GetVariables(), CParseQualTreeItemData::GetVariables(), CRmvOutsideQualTreeItemData::GetVariables(), CApplyTableItemData::GetVariables(), CMacroInterpreter::InterpretDoFunctions(), CDebugDumpContext::Log(), impl::CDriverContext::MakeConnection(), value_slice::CValueConvert< CP, bool >::operator string(), CDoQueryTreeGetArgs::operator()(), CWhereQueryTreeGetArgs::operator()(), CQueryTreePrintFunc::operator()(), CDiagContext_Extra::Print(), CArgDesc_Flag::ProcessArgument(), CArgDesc_Flag::ProcessDefault(), CSGQueryNodeValue::PromoteTo(), CSampleBasicApplication::Run(), s_ConvertValue(), s_ScanRecursive(), CGeneModelConfig::SaveSettingsAsString(), SNSAlertAttributes::Serialize(), CMbIndexArgs::SetArgumentDescriptions(), CPluginValue::SetBoolean(), CMacroRep::SetFunctionParameterAsBool(), IRWRegistry::SetValue(), IMacroActionItemData::TransferDataToPanel(), CParamParser< TDescription, TParam >::ValueToString(), CNCServer::WriteAppSetup(), CJob::x_AppendNeedListenerProgressMsgNotif(), CJob::x_AppendNeedStolenNotif(), CJob::x_AppendNeedSubmitProgressMsgNotif(), CMacroInterpreter::x_ApplyUnverifiedValidateArgs(), CMacroInterpreter::x_ConvertFeatQualValidateArgs(), CMacroInterpreter::x_ConvertRNARelQualValidateArgs(), CMacroInterpreter::x_ConvertStringQualValidateArgs(), CNCMessageHandler::x_DoCmd_Version(), CMacroInterpreter::x_EditRelFeatQualValidateArgs(), CMacroInterpreter::x_EditStringQualValidateArgs(), CMacroInterpreter::x_EditSubfieldValidateArgs(), CSDB_ConnectionParam::x_FillBoolParam(), CMacroPanelLoader::x_GetCheckboxSelection(), CMacroPanelLoader::x_GetRadiobuttonSelection(), CNetScheduleHandler::x_GetServerSection(), IOperateOnTwoQuals::x_GetSourceString(), CTableReaderMacro::x_GetVariables(), CAssignQueryTreeGetArgs::x_ProcessFunction(), CWhereQueryTreeGetArgs::x_ProcessFunction(), CNetScheduleHandler::x_ProcessReading(), CEpigenomicsTrack::x_SaveSettings(), CGraphOverlay::x_SaveSettings(), CGraphTrack::x_SaveSettings(), CSequenceTrack::x_SaveSettings(), CAlignmentTrack::x_SaveSettings(), CSixFramesTransTrack::x_SaveSettings(), CMacroInterpreter::x_StoreParsingArguments(), and CAttribTableColumnIdPanel::x_TableReaderMacro().

Definition at line 4819 of file ncbistr.hpp.

Convert encoded character into Unicode.

Parameters

ch Encoded character lcl Character locale

Returns

Unicode code point (symbol)

Definition at line 6950 of file ncbistr.cpp.

Clears the string.

Definition at line 351 of file tempstr.hpp.

References CTempString::m_Length, CTempString::m_String, NCBI_TEMPSTR_DESTROY_COPY, and NCBI_TEMPSTR_MAKE_COPY.

Referenced by SAccGuide::AddRule(), CBioseqIndex::CBioseqIndex(), SHTTP_StatusData::Clear(), CTempStringList::Clear(), CTempStringEx::clear(), CNCBlobKeyLight::Clear(), CDB_String::GetBulkInsertionData(), CAutoDefFeatureClause_Base::GetFeatureClausePhrases(), CMemorySrcFileMap::GetMods(), CCgiContext::GetSelfURL(), CForeignContaminationScreenReportReader::LoadFile(), CNCActiveHandler::x_CleanCmdResources(), CTempString::x_Init(), CMemorySrcFileMap::x_RegisterLine(), CDeflineGenerator::x_SetFlags(), and CDeflineGenerator::x_SetFlagsIdx().

Determine if the suffix of one string is the prefix of another.

Parameters

s1 String to be compared – operand 1. s2 String to be compared – operand 2.

Returns

The number of characters common to the end of the first string and the start of the second string.

Definition at line 3092 of file ncbistr.cpp.

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

Compare two strings – char* version.

Parameters

s1 String to be compared – operand 1. s2 String to be compared – operand 2. use_case Whether to do a case sensitive compare(default is eCase), or a case-insensitive compare (eNocase).

Returns

• 0, if s1 == s2.
• Negative integer, if s1 < s2.
• Positive integer, if s1 > s2.

See also

Other forms of overloaded Compare() with differences in argument types: char* vs. CTempString[Ex]

Definition at line 5307 of file ncbistr.hpp.

References NStr::CompareCase(), NStr::CompareNocase(), and NStr::eCase.

Compare of a substring with another string.

Parameters

s1 String containing the substring to be compared. pos Start position of substring to be compared. n Number of characters in substring to be compared. s2 String (char*) to be compared with substring. use_case Whether to do a case sensitive compare(eCase – default), or a case-insensitive compare (eNocase).

Returns

• 0, if s1[pos:pos+n) == s2;
• Negative integer, if s1[pos:pos+n) < s2;
• Positive integer, if s1[pos:pos+n) > s2.

See also

Other forms of overloaded Compare() with differences in argument types: char* vs. CTempString[Ex]

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 5291 of file ncbistr.hpp.

References NStr::CompareCase(), NStr::CompareNocase(), NStr::eCase, n, and CTempString::substr().

Referenced by CAutoDefSourceDescription::Compare(), CTraversalNode::CUserCall::Compare(), CSUCLine::Compare(), PCase_Generic< T >::Compare(), PNocase_Generic< T >::Compare(), PNocase_Conditional_Generic< T >::Compare(), CTable2AsnContext::CopyFeatureIdsToComments(), CDirEntry::CreateRelativePath(), CSGQueryFunctionCompare::Evaluate(), CQueryFuncPromoteEq::Evaluate(), CQueryFuncPromoteIn::Evaluate(), CQueryFuncPromoteGtLt::Evaluate(), CQueryFuncPromoteBetween::Evaluate(), CDllResolver::FindCandidates(), impl::g_SubstituteParam(), CResultSet::GetColNum(), GetFieldDiffsFromNameValLists(), impl::CDBConnParamsBase::GetProtocolVersion(), CLatLonMap_Base::IsCountryInLatLon(), CFeatComparatorByLabel::Less(), CSpectrumSet::LoadMultDTA(), CAttribTableColumnIdPanel::OnMatchColumnClick(), CTraversalNode::SRefNodeCallLessthan::operator()(), IsStandard::operator()(), SChildLess::operator()(), CBDB_Cache::CacheKey::operator<(), operator<(), CQueryFuncPromoteBase::PreProcess(), s_CompareDescriptions(), s_CompareStructuredCommentFields(), s_FieldRuleCompare(), s_iCompareNameVals(), s_IsCDDFeat(), CConnTest::ServiceOkay(), CConnTest::x_GetFirewallConfiguration(), x_LeuCUGstart(), CSingleFeatValidator::x_ValidateGeneXRef(), CGeneValidator::x_ValidateOperon(), ASNParser::x_Value(), and CReaderBase::xSetBrowserRegion().

Compare of a substring with another string.

Parameters

s1 String containing the substring to be compared. pos Start position of substring to be compared. n Number of characters in substring to be compared. s2 String to be compared with substring. use_case Whether to do a case sensitive compare(default is eCase), or a case-insensitive compare (eNocase).

Returns

• 0, if s1[pos:pos+n) == s2;
• Negative integer, if s1pos:pos+n) < s2;
• Positive integer, if s1[pos:pos+n) > s2.

See also

Other forms of overloaded Compare() with differences in argument types: char* vs. CTempString[Ex]

Definition at line 5299 of file ncbistr.hpp.

References NStr::CompareCase(), NStr::CompareNocase(), NStr::eCase, n, and CTempString::substr().

Compare two strings – CTempStringEx version.

Parameters

s1 String to be compared – operand 1. s2 String to be compared – operand 2. use_case Whether to do a case sensitive compare(default is eCase), or a case-insensitive compare (eNocase).

Returns

• 0, if s1 == s2;
• Negative integer, if s1 < s2;
• Positive integer, if s1 > s2.

See also

Other forms of overloaded Compare() with differences in argument types: char* vs. CTempString[Ex]

Definition at line 5313 of file ncbistr.hpp.

References NStr::CompareCase(), NStr::CompareNocase(), and NStr::eCase.

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

Case-sensitive compare of two strings – char* version.

Parameters

s1 String to be compared – operand 1. s2 String to be compared – operand 2.

Returns

• 0, if s1 == s2;
• Negative integer, if s1 < s2;
• Positive integer, if s1 > s2.

See also

CompareNocase(), Compare() versions with same argument types.

Definition at line 5279 of file ncbistr.hpp.

References NStr::strcmp().

Case-sensitive compare of a substring with another string.

Parameters

s1 String containing the substring to be compared. pos Start position of substring to be compared. n Number of characters in substring to be compared. s2 String (char*) to be compared with substring.

Returns

• 0, if s1[pos:pos+n) == s2;
• Negative integer, if s1[pos:pos+n) < s2;
• Positive integer, if s1[pos:pos+n) > s2.

See also

Other forms of overloaded CompareCase() with differences in argument types: char* vs. CTempString[Ex]

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 135 of file ncbistr.cpp.

References CTempString::data(), CTempString::length(), n, and NPOS.

Referenced by BinOpsFuncString(), SNetScheduleNotificationThread::CheckNotification(), CBiosampleFieldDiff::Compare(), NStr::Compare(), CBiosampleFieldDiff::CompareAllButSequenceID(), SMakeProjectT::Create3PartyLibs(), CSDBAPI::Init(), CNcbiTestApplication::InitTestFramework(), s_ByAccVerLen::operator()(), CConvertCache::SCacheKeySort::operator()(), SCompareDirEntries::operator()(), TSortCit::operator()(), CUniSequenceDataType::PrintXMLSchema(), PromoteIfDifferent(), s_PcrPrimerCompare(), s_SeqDescCompare(), CStringOrBlobStorageReader::x_GetDataType(), CRegexpTemplateTester::x_ParseVar(), CTar::x_ProcessEntry(), and CSortedProteins::x_SortProteinNames().

Case-sensitive compare of a substring with another string.

Parameters

s1 String containing the substring to be compared. pos Start position of substring to be compared. n Number of characters in substring to be compared. s2 String to be compared with substring.

Returns

• 0, if s1[pos:pos+n) == s2;
• Negative integer, if s1[pos:pos+n) < s2;
• Positive integer, if s1[pos:pos+n) > s2.

See also

Other forms of overloaded CompareCase() with differences in argument types: char* vs. CTempString[Ex]

Definition at line 158 of file ncbistr.cpp.

References CTempString::data(), CTempString::empty(), CTempString::length(), n, and NPOS.

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

template<typename _TChar >

Case-insensitive compare of two strings – char* version.

Parameters

s1 String to be compared – operand 1. s2 String to be compared – operand 2.

Returns

• 0, if s1 == s2 (case-insensitive compare);
• Negative integer, if s1 < s2 (case-insensitive compare);
• Positive integer, if s1 > s2 (case-insensitive compare).

See also

CompareCase(), Compare() versions with same argument types.

Definition at line 5285 of file ncbistr.hpp.

References NStr::strcasecmp().

Case-insensitive compare of a substring with another string.

Parameters

s1 String containing the substring to be compared. pos Start position of substring to be compared. n Number of characters in substring to be compared. s2 String (char*) to be compared with substring.

Returns

• 0, if s1[pos:pos+n) == s2 (case-insensitive compare);
• Negative integer, if s1[pos:pos+n) < s2 (case-insensitive compare);
• Positive integer, if s1[pos:pos+n) > s2 (case-insensitive compare).

See also

Other forms of overloaded CompareNocase() with differences in argument types: char* vs. CTempString[Ex]

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 219 of file ncbistr.cpp.

References CTempString::data(), CTempString::length(), n, NPOS, and tolower().

Referenced by CMsvcPrjProjectContext::AdditionalIncludeDirectories(), CQueryParsePanel::AddQueryText(), BinOpsFuncString(), BOOST_AUTO_TEST_CASE(), WSDLParser::BuildDataTree(), CPSGS_DummyProcessor::CanProcess(), CRtProfiler::CheckDoReport(), SInputValidator::CheckEntry(), subfuse::CmpEntry(), CSeq_id::Compare(), CSeqsRange::Compare(), NStr::Compare(), CBDB_FieldStringCase::Compare(), CBiosampleFieldDiff::CompareAllButSequenceID(), CSeq_feat::CompareNonLocation(), CSeq_id_General_Id_Info::CompareOrdered(), CSeqTextPaneConfig::ConfigStringToFeatureDisplayType(), CDBUniversalMapper::ConfigureFromRegistry(), CICacheCF< CNetICacheClient >::ConfigureICache(), CICacheCF< CNetICacheClient >::ConfigureTimeStamp(), CConfig::ConvertRegToTree(), COperationTiming::COperationTiming(), CBlastDb_DataLoaderCF::CreateAndRegister(), CRmtBlastDb_DataLoaderCF::CreateAndRegister(), CSQLITE3_BlobCacheCF::CreateInstance(), CBlastFormatUtil::CreateSeqAnnotFromSeqAlignSet(), CBlastOptionsFactory::CreateTask(), CVarTrackFactory::CreateTracks(), CRemoteAppLauncher::CRemoteAppLauncher(), CTime::DayOfWeekNameToNum(), SLibProjectT::DoCreate(), EnabledDelayBuffers(), NStr::EqualNocase(), CQueryFuncPromoteEq::Evaluate(), CQueryFuncPromoteIn::Evaluate(), fix_pub::ExtractConsortiums(), CCompressedFile::FileExists(), FixUSAAbbreviationInAffil(), fta_cmp_gene_refs(), fta_cmp_gene_syns(), fta_cmp_locusyn(), fta_sort_quals(), CCodeGenerator::GenerateCvsignore(), CCodeGenerator::GenerateFileList(), CRemoteAppTimeoutReporter::Get(), CUser_object::GetCategory(), GetCharsetEncodingForm(), CAlignFormatUtil::GetDbType(), SNetStorage::SConfig::GetDefaultStorage(), SNetStorage::SConfig::GetErrMode(), CUser_object::GetExperimentType(), CTreeQueryExec::GetFeatureIdNoCase(), CBDB_BufferManager::GetFieldIndex(), CDataLoaderFactory::GetIsDefault(), CCgiApplication::GetLogOpt(), CSpectrumSet::GetMGFBlock(), SCombinedNetStorageConfig::GetMode(), GetProteinWeights(), CGridCgiContext::GetQueryStringEntryValue(), CGridCgiContext::GetRequestEntryValue(), CTestArguments::GetServerName(), CCPPToolkitConnParams::GetServerType(), CCommentItem::GetStringForTPA(), CBDB_FieldFactory::GetType(), SourceFile::GetType(), CJsonNode::GuessType(), CTableQueryExec::HasIdentifier(), CConnTest::HttpOkay(), CTableQueryExec::IdentifierType(), SNetCacheAPIImpl::Init(), CProjectsLstFileFilter::InitFromString(), CPSGS_CassProcessorBase::IsCassandraProcessorEnabled(), CTable2AsnContext::IsDBLink(), CQueueClientInfoList::IsMatchingClient(), CValidError_graph::IsSupportedGraphType(), CValidError_bioseq::IsSynthetic(), CSeqEntrySource::IsUnverified(), CFeatComparatorByLabel::Less(), CMatrixScoringMethod::Load(), CProjBulderApp::LoadDepGraph(), PssmMaker::makeDefaultPssm(), CTime::MonthNameToNum(), Normalize(), CDirEntry::NormalizePath(), NS_ValidateClasses(), NS_ValidateQueues(), StructureWindow::OnEditFavorite(), CPipeHandle::Open(), CPubseqGatewayApp::OpenCass(), CAnnotObjectType_Less::operator()(), LessThan::operator()(), SCaseInsensitiveQuickLess::operator()(), SCaseInsensitiveLess::operator()(), SCaseInsensitivePredicate::operator()(), CHttpCookies::SDomainLess::operator()(), string_nocase_less::operator()(), CMacroEngine::SKey_Less::operator()(), CSeq_id_General_Str_Info::PKeyLess::operator()(), SNodeNameUpdater::operator()(), CWGSBlobId::operator<(), CPCRParsedSet::operator<(), CSeq_id_Textseq_Info::TKey::operator<(), CBDB_ConfigStructureParser::ParseStructureLine(), CBlastFormat::PrintArchive(), CProjectTreeBuilder::ProcessDir(), CDataTool::ProcessModules(), ProductNamesAreSimilar(), CNetScheduleServer::ReadServicesConfig(), CNetScheduleServer::ResolveService(), CGridCommandLineInterfaceApp::Run(), CBDB_FileDumperApp::Run(), CNcbiSample_Dbapi_Advanced_Features::RunSample(), s_AccessionCompare(), s_CompareDates(), CLatLonMap_Base::s_CompareTwoLinesByCountry(), CLatLonMap_Base::s_CompareTwoLinesByLatLonThenCountry(), s_Config_less(), s_FileName_less(), s_GbQualCompare(), s_GetBaseName(), CPackString::s_GetEnvFlag(), s_GetProteinName(), s_GetUserObjectContent(), s_HasTpaUserObject(), s_iCompareNameVals(), s_Is_ISO_8859_1(), s_Is_UTF_8(), s_Is_Windows_1252(), s_IsSubNode(), s_LineIndicatesOrder(), s_OrgModCompare(), s_OrgModEqual(), s_OrgrefSynCompare(), s_PCRPrimerLess(), s_PCRSetCompare(), s_SetProtRef(), s_SetServiceName(), s_SubsourceCompareC(), s_SubsourceEquivalent(), CGBDocument::Save(), SeqDB_SimplifySeqid(), CCdDbPriority::SeqIdTypeToSourceCode(), CConnTest::ServiceOkay(), CObject::SetAllocFillMode(), impl::CDriverContext::SetClientCharset(), CBlastOptions::SetFilterString(), CNetScheduleAccessList::SetHosts(), CNetCacheAPIParameters::SetMirroringMode(), CUrlArgs_Parser::SetQueryString(), CNetCacheAPIParameters::SetServerCheck(), CValidError_imp::Setup(), CNetScheduleServer::ShouldPerfLogTransitions(), SourceFileExt(), CConnTest::StatefulOkay(), CNetScheduleAPI::StringToStatus(), CNcbiDiag::StrToSeverityLevel(), sx_InitFillNewMemoryMode(), CReportTrim::TrimSeqGraphs(), TrimSequenceAndAnnotation(), CSrcFeatValidator::Validate(), CImpFeatValidator::Validate(), CValidError_imp::ValidateAuthorList(), CValidError_imp::ValidateBadNameStd(), CValidError_imp::ValidateBioSource(), CValidError_imp::ValidateOrgRef(), CValidError_bioseqset::ValidatePopSet(), CValidError_bioseq::ValidateSecondaryAccConflict(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_bioseq::ValidateSeqId(), CValidError_desc::ValidateUser(), CValidError_bioseq::ValidateWGSMaster(), CFeatureItem::x_AddQualsCdregionIdx(), CFeatureItem::x_AddQualsRna(), CFeatureItem::x_AddRegulatoryClassQual(), CSeqTextDataSourceInterval::x_AddVariationsFromFeature(), CNewCleanup_imp::x_ChangePopToPhy(), CSoapFault::x_CodeToFaultcodeEnum(), CBDB_CacheReaderCF::x_CreateInstance(), CQueueDataBase::x_Dump(), CQueryParsePanel::x_ExecuteQuery(), CLatLonMap_Base::x_FindCountryExtreme(), CGenbankGatherer::x_GatherTLS(), CGenbankGatherer::x_GatherTSA(), CGenbankGatherer::x_GatherWGS(), CTableQueryExec::x_GetColumnIdx(), CQueueDataBase::x_GetConfigQueues(), CDiagSyntaxParser::x_GetDiagSeverity(), CPubseqGatewayApp::x_GetEnabledAndDisabledProcessors(), CConnTest::x_GetFirewallConfiguration(), CGuiObjectInfoSeq_feat::x_GetGroupToolTip(), CCompressedFile::x_GetProtocol(), CSerialObject::x_GetVerifyData(), CObjectIStream::x_GetVerifyDataDefault(), CObjectOStream::x_GetVerifyDataDefault(), CTableColumnTypeGuesser::x_GuessType(), CNewCleanup_imp::x_HandleTrnaProductGBQual(), CNCAlerts::x_IdToType(), CPSGAlerts::x_IdToType(), CFeatureItem::x_ImportQuals(), CRemoteBlast::x_InitDiskCache(), CValidError_bioseq::x_IsActiveFin(), CHttpHeaders::x_IsReservedHeader(), CQueryParsePanel::x_IsValidQuery(), CGff3ReadRecord::x_NormalizedAttributeKey(), CTar::x_ProcessEntry(), CNetScheduleHandler::x_ProcessMsgQueue(), CNetScheduleHandler::x_ProcessMsgRequest(), CNetScheduleHandler::x_ProcessSetQueue(), CSoapServerApplication::x_ProcessWsdlRequest(), CQueueDataBase::x_ReadIniFileQueueClassDescriptions(), CQueueDataBase::x_ReadIniFileQueueDescriptions(), CQueueDataBase::x_ReadLinkedSections(), CCgiEntryReaderContext::x_ReadMultipartHeaders(), x_RepairCountryName(), CQueueDataBase::x_RestoreRefuseSubmitState(), CSeqDBIsam::x_StringSearch(), CVectorTrimPanel::x_TrimSeqGraphs(), CSingleFeatValidator::x_ValidateGeneXRef(), CGeneValidator::x_ValidateOperon(), CSingleFeatValidator::x_ValidateRptUnitVal(), SPubseqGatewaySettings::x_ValidateStatisticsSection(), CRNAValidator::x_ValidateTrnaCodons(), CRNAValidator::x_ValidateTrnaType(), SGridWorkerNodeImpl::x_WNCoreInit(), and CGtfReader::xProcessQualifierSpecialCase().

Case-insensitive compare of a substring with another string.

Parameters

s1 String containing the substring to be compared. pos Start position of substring to be compared. n Number of characters in substring to be compared. s2 String to be compared with substring.

Returns

• 0, if s1[pos:pos+n) == s2 (case-insensitive compare);
• Negative integer, if s1[pos:pos+n) < s2 (case-insensitive compare);
• Positive integer, if s1[pos:pos+n) > s2 (case-insensitive compare).

See also

Other forms of overloaded CompareNocase() with differences in argument types: char* vs. CTempString[Ex]

Definition at line 248 of file ncbistr.cpp.

References CTempString::data(), CTempString::empty(), CTempString::length(), n, NPOS, and tolower().

template<typename _TChar >

Discard C-style backslash escapes.

Parameters

str The original string to parse. quoted Define that parsing string is quoted or not. If parameter "quoted" equal eQuoted and string is not started and finished with a double-quote, the exception will be thrown, otherwise quotes will be removed in result.

Returns

String with parsed C-style escape sequences.

See also

CEncode

Definition at line 3972 of file ncbistr.cpp.

Referenced by s_DecodeMetadataValue().

Constructor.

Report "pos" along with "what".

Definition at line 4410 of file ncbistr.hpp.

template<class TContainer >

Create parser with the specified parameters.

Parameters

arg_sep Separator between name+value pairs val_sep Separator between name and value decoder String decoder (Url, Xml etc.) own_decoder Decoder ownership flag encoder String encoder (Url, Xml etc.) own_encoder Encoder ownership flag

Definition at line 4630 of file ncbistr.hpp.

template<class TContainer >

Create parser with the specified decoder/encoder and default separators.

Parameters

decoder String decoder (Url, Xml etc.) own_decoder Decoder ownership flag decoder String encoder (Url, Xml etc.), optional own_encoder Encoder ownership flag, optional

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 4605 of file ncbistr.hpp.

template<class TContainer >

Create parser with the selected URL-encoding/decoding options and default separators.

Parameters

decode_flag URL-decoding flag encode_flag URL-encoding flag

Definition at line 4650 of file ncbistr.hpp.

template<class TStr , class TV , class TP = CStrDummyTokenPos, class TCount = CStrDummyTokenCount, class TReserve = CStrDummyTargetReserve<TV, TP>>

Constructor.

Parameters

str String to be tokenized. delim Set of char delimiters used to tokenize string "str". If delimiter is empty, then input string is appended to "arr" as is. flags Flags governing splitting. Without NStr::fSplit_MergeDelimiters, delimiters that immediately follow each other are treated as separate delimiters - empty string(s) appear in the target output.

Definition at line 248 of file ncbistr_util.hpp.

template<class TPosContainer >

If token_pos construction parameter is NULL all calls are ignored.

Definition at line 376 of file ncbistr_util.hpp.

Definition at line 7413 of file ncbistr.cpp.

Definition at line 921 of file tempstr.hpp.

template<typename _TChar >

template<typename _TChar >

template<size_t num_prealloc, typename TIn = string, typename TOut = basic_string<typename TIn::value_type>>

Definition at line 64 of file text_joiner.hpp.

Definition at line 3283 of file ncbistr.hpp.

template<typename _TChar >

Return a pointer to the array represented.

As with std::basic_string<>, this is not guaranteed to be NULL terminated.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 313 of file tempstr.hpp.

References CTempString::m_String.

Referenced by CDelta_ext::AddAndSplit(), CDelta_ext::AddLiteral(), SAccGuide::AddRule(), CWriteDB_Impl::AddSequence(), CWriteDB::AddSequence(), CBuildDatabase::AddSequences(), NStr::CWrapDestStringList::Append(), CNCBlobKey::Assign(), CTempString::assign(), CTL_Cmd::AssignCmdParam(), CPrintJobInfo::BeginJobEvent(), CleanAndCompress(), CTempString::compare(), NStr::CompareCase(), NStr::CompareNocase(), CGapsEditor::ConvertNs2Gaps(), CWGSDb_Impl::DetermineFeatLocIdType(), CDiffText::Diff(), CExtraEncoder::Encode(), CFlatXrefQVal::Format(), g_FixMisplacedPID(), CRR_Util::GetFieldValueConverted(), CCSraAlignIterator::GetMatchAlign(), CWGSFeatureIterator::GetSeq_feat(), CNCDistributionConf::GetSlotByNetCacheKey(), CSeq_id::IdentifyAccession(), CNCBlobKeyLight::KeyForLogs(), CNCBlobKeyLight::KeyVersion(), CCSRARefSeqInfo::LoadAnnotPileupChunk(), CBamRefSeqInfo::LoadPileupChunk(), CCSraAlignIterator::MakeFullMismatch(), CDBParamVariant::MakeName(), CDBParamVariant::MakePlainName(), CPubseqGatewayApp::OnAccessionVersionHistory(), CPubseqGatewayApp::OnAckAlert(), CPubseqGatewayApp::OnGet(), CPubseqGatewayApp::OnGetBlob(), CPubseqGatewayApp::OnGetNA(), CPubseqGatewayApp::OnResolve(), CPubseqGatewayApp::OnShutdown(), PQuickStringLess::operator()(), operator+(), CRR_Field< TTraits >::operator=(), CNCBlobKeyLight::operator=(), CTempString::operator==(), CNCBlobKeyLight::PackBlobKey(), CNetServProtoParserBase::ParseArguments(), CNetServProtoParserBase::ParseCommand(), CDiagCompileInfo::ParseCurrFunctName(), CPrintJobInfo::PrintXput(), CPrintJobInfo::ProcessJobEventField(), CPrintJobInfo::ProcessJobInfoField(), CObjectIStreamAsn::ReadDouble(), CRegexpUtil::Replace(), CAttrListParser::Reset(), s_AddParamName(), s_GetrRNAProductsSuspectRuleSet(), CTL_LangCmd::Send(), SeqDB_UnpackAmbiguities(), CRegexp::Set(), CThread::SetCurrentThreadName(), CTL_BCPInCmd::SetHints(), sFindBrackets(), CTempStringEx::substr(), sx_AddAnnotBytes(), sx_AddDescrBytes(), CRowReaderStream_Excel_CSV::Tokenize(), CRowReaderStream_IANA_CSV::Tokenize(), CRowReaderStream_Excel_CSV::Translate(), CRowReaderStream_IANA_CSV::Translate(), TrimSpacesAndJunkFromEnds(), CRR_Util::ValidateBasicTypeFieldValue(), CSrvSocketTask::WriteText(), CWriteDB_IsamIndex::x_AddString(), CWriteDB_IsamIndex::x_AddStringData(), CDB_Stream::x_Append(), CNCMessageHandler::x_AssignCmdParams(), CTL_BCPInCmd::x_AssignParams(), CPubseqGatewayApp::x_CheckAuthorization(), x_CleanAndCompress(), CDiffList::x_CleanupAndMerge_Equities(), CDiffList::x_CleanupAndMerge_SingleEdits(), CWig2tableApplication::x_CommentLine(), CWriteDB_Impl::x_ComputeHash(), CBlastDbBlob::x_Copy(), CRR_Row< TTraits >::x_CopyFields(), CRowReaderStream_NCBI_TSV::x_ExtractNames(), CTitleParser::x_FindBrackets(), CSeqDBVol::x_GetFilteredBinaryHeader(), CSeqDBVol::x_GetHdrAsn1(), CWig2tableApplication::x_GetParamName(), CWig2tableApplication::x_GetParamValue(), CWig2tableApplication::x_GetPos(), CWig2tableApplication::x_GetWord(), CSeq_id::x_IdentifyAccession(), CLatLonMap_Base::x_InitFromFile(), x_MakeTSqlString(), CNCMessageHandler::x_ReadAuthMessage(), CShortReadFastaInputSource::x_ReadFastaOneSeq(), CShortReadFastaInputSource::x_ReadFastc(), CShortReadFastaInputSource::x_ReadFastqOneSeq(), CBlastDbBlob::x_ReadRaw(), CBlastDbBlob::x_ReadString(), CRowReaderStream_IANA_CSV::x_SetFieldNames(), CWig2tableApplication::x_SkipWS(), CWig2tableApplication::x_TryGetDouble(), CWig2tableApplication::x_TryGetDoubleSimple(), CWig2tableApplication::x_TryGetPos(), and CFastaOstream::x_WriteSequence().

Dedent multi-line string, removing common whitespace prefix for each line.

Parameters

str String to be dedented. flags Optional flags to tune up how to dedent string.

Returns

String with removed common whitespace indentation.

Note

Empty lines, and lines containing whitespace only with fDedent_NormalizeEmptyLines flag, are not used in computing common whitespace prefix.

Assumes that whitespace prefixes are the same on each line, in other words, if a common prefix have a mix of spaces and tabulation characters, it should be the same for each line. Or this method can works incorrectly. Also, you can use Replace() first to replace tabulations and make whitespace consistent across lines.

See also

Replace, DedentR

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 5494 of file ncbistr.cpp.

Referenced by NStr::DedentR().

template<class TStr , class TV , class TP = CStrDummyTokenPos, class TCount = CStrDummyTokenCount, class TReserve = CStrDummyTargetReserve<TV, TP>>

Tokenize the string using the specified set of char delimiters.

Parameters

target Output container. Tokens defined in "str" by using symbols from "delim" are added to the list "target". token_pos Container for the tokens' positions in "str". empty_str String added to target when there are no other characters between delimiters

Definition at line 264 of file ncbistr_util.hpp.

References CStrTokenizeBase::Advance(), CStrTokenizeBase::AtEnd(), CTempStringList::Clear(), CTempString::empty(), NStr::fSplit_Truncate_End, i, CTempStringList::Join(), CStrTokenizeBase::m_Delim, CStrTokenizeBase::m_Flags, CStrTokenizeBase::m_Pos, CStrTokenizeBase::m_Storage, CStrTokenizeBase::m_Str, and NPOS.

Convert double to string.

Parameters

value Double value to be converted. precision Precision value for conversion. If precision is more that maximum for current platform, then it will be truncated to this maximum. If it is negative, that double will be converted to number in scientific notation. flags How to convert value to string. If double format flags are not specified, that next output format will be used by default:

• fDoubleFixed, if 'precision' >= 0.
• fDoubleGeneral, if 'precision' < 0.

Returns

• If conversion succeeds, set errno to zero and return the converted string value.
• Otherwise, set errno to non-zero and return empty string.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 5181 of file ncbistr.hpp.

References flags, precision, str(), and rapidjson::value.

Referenced by CReportParams::Add(), CObjFingerprint::AddDouble(), CSAM_CIGAR_Formatter::AddRow(), CContigAssembly::Align(), BLASTer::CalculateSelfHitScores(), CGridCommandLineInterfaceApp::Cmd_Discover(), CollectAttributes(), CPepXML::ConvertDouble(), CColumnScoringPanel::CreateControls(), CMatrixScoringPanel::CreateControls(), CHistConfigDlg::CreateControls(), CTableAnnotDataSource::CreateFeature(), BLASTer::CreateNewPairwiseAlignmentsByBlast(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), NStr::DoubleToString(), CGlUtils::DumpState(), CBDB_Cache::EvaluateTimeLine(), CDiagContext_Extra::Flush(), CAlnVecRow::GetColumnText(), CRealDataType::GetDefaultString(), CHistogramGlyph::GetHTMLActiveAreas(), GetPercentN(), CBDB_FieldFloat::GetString(), CBDB_FieldDouble::GetString(), CExprValue::GetString(), CVariant::GetString(), NMacroUtil::GetStringValue(), CTableDataAlnSummary::GetStringValue(), CTableDataSeq_table::GetStringValue(), CHistogramGlyph::GetTooltip(), CLDBlockGlyph::GetTooltip(), CArgAllowValuesGreaterThanOrEqual::GetUsage(), CArgAllowValuesLessThanOrEqual::GetUsage(), CArgAllowValuesBetween::GetUsage(), CArgAllow_Doubles::GetUsage(), CEditingActionDescUserObject::GetValue(), CMultiApplication::Init(), SegMaskerApplication::Init(), CDebugDumpContext::Log(), CSubSource::MakeLatLon(), MostFrequentGapSize(), CQueryParsePanel::OnIdle(), CwxPhyloSettingsDlg::OnSelectionAlphaSliderUpdated(), CNetBLASTUIDataSource::Open(), CGenBankUIDataSource::Open(), value_slice::CValueConvert< CP, float >::operator string(), value_slice::CValueConvert< CP, double >::operator string(), CQueryTreePrintFunc::operator()(), CTreeConvertNonSingleChild2ContainerFunc< TBioTreeContainer, TTreeType >::operator()(), CSrvStrStream::operator<<(), CDiagContext_Extra::Print(), printGFF3(), CArgAllow_Doubles::PrintUsageXml(), CSGQueryNodeValue::PromoteTo(), CQueryNodeValue::PromoteTo(), NSnpGui::PValueToString(), Threader::Realign(), RegistrySetDouble(), CPhyloTreeDataSource::ReRootMidpoint(), CTableQueryExec::ResolveIdentifier(), RestoreModelAttributes(), CObjConvProfile::Run(), CDbapiTestSpeedApp::RunSample(), s_AddNodeToBtc(), s_AddToLog(), s_CalcGumbelParams(), s_ConvertValue(), s_GetAlignmentTooltip(), s_GetNewick(), s_Repr_Value(), s_ScanRecursive(), s_SetAirrAlignmentInfo(), s_ToString(), s_ValToString(), CGtfImportData::Serialize(), CTimeout::Set(), CTimeSpan::Set(), CIgBlastTabularInfo::SetAirrFormatData(), CGenericSearchArgs::SetArgumentDescriptions(), CGapTriggerArgs::SetArgumentDescriptions(), CPssmEngineArgs::SetArgumentDescriptions(), CHspFilteringArgs::SetArgumentDescriptions(), CPluginValue::SetDouble(), CMacroRep::SetFunctionParameterAsFloat(), CGffAlignmentRecord::SetScore(), CGffBaseRecord::SetScore(), CBlastTabularInfo::SetScores(), CSplignArgUtil::SetupArgDescriptions(), CCompartOptions::SetupArgDescriptions(), CPhyloNodeData::Sync(), CMacroFunction_SubtreeSum::TheFunction(), CBLASTParams::ToArgVec(), CGlRect< TVPUnit >::ToString(), CLocMapper_Default::CGappedRange::ToString(), CBDB_FieldFloat::ToString(), CBDB_FieldDouble::ToString(), CCleanupAlignmentsParamsPanel::TransferDataToWindow(), CValidError_graph::ValidateGraphsOnBioseq(), CParamParser< TDescription, TParam >::ValueToString(), CGridCgiSampleApplication::VectorToString(), CObjectOStreamJson::WriteDouble2(), CObjectOStreamXml::WriteDouble2(), CAlnMultiRenderer::x_AddStatisticsRow(), CHistogramGlyph::x_DrawLinearRuler(), CHistogramGlyph::x_DrawLogRuler(), CShowBlastDefline::x_FormatDeflineTableLine(), CShowBlastDefline::x_FormatDeflineTableLineCSV(), CShowBlastDefline::x_FormatDeflineTableLineText(), CDownloadJob::x_FormatSize(), CAlnGraphic::x_GetAlnInfo(), IOperateOnTwoQuals::x_GetSourceString(), CShowBlastDefline::x_InitFormattingInfo(), CBlastAppArgs::x_IssueWarningsForIgnoredOptions(), NStr::x_NumericToString(), CDisplaySeqalign::x_PrepareRowData(), CBlastTabularInfo::x_PrintPercentIdentical(), CBlastTabularInfo::x_PrintPercentPositives(), CNetScheduleHandler::x_ProcessMsgBatchSubmit(), CXmlValueItem::x_RenderXml(), CMakeProfileDBApp::x_SetupArgDescriptions(), IMacroVar::SValue::x_WriteAsString(), CVcfWriter::x_WriteFeatureInfo(), CVcfWriter::x_WriteFeatureQual(), CBedTrackRecord::xImportKeyValuePairs(), CBedReader::xSetFeatureColorFromScore(), and CVcfReader::xSetFileFormat().

Convert double to string with specified precision and place the result in the specified buffer.

Parameters

value Double value to be converted. precision Precision value for conversion. If precision is more that maximum for current platform, then it will be truncated to this maximum. buf Put result of the conversion into this buffer. buf_size Size of buffer, "buf". flags How to convert value to string. Default output format is fDoubleFixed.

Returns

• If conversion succeeds, set errno to zero and return the number of bytes stored in "buf", not counting the terminating '\0'.
• Otherwise, set errno to non-zero, value of 'out_str' is undefined.

Definition at line 2353 of file ncbistr.cpp.

Convert double to string.

Parameters

out_str Output string variable value Double value to be converted. precision Precision value for conversion. If precision is more that maximum for current platform, then it will be truncated to this maximum. If it is negative, that double will be converted to number in scientific notation. flags How to convert value to string. If double format flags are not specified, that next output format will be used by default:

• fDoubleFixed, if 'precision' >= 0.
• fDoubleGeneral, if 'precision' < 0.

Note

• If conversion succeeds, set errno to zero and return the converted string value in 'out_str'.
• Otherwise, set errno to non-zero, value of 'out_str' is undefined.

Definition at line 2311 of file ncbistr.cpp.

References buffer, conv, NStr::DoubleToString(), NStr::fDoubleFixed, NStr::fDoubleGeneral, NStr::fDoublePosix, NStr::fDoubleScientific, finite, flags, format, kMaxDoubleStringSize, n, precision, and rapidjson::value.

Convert double to string with specified precision.

The result consists of three parts: significant digits, exponent and sign. For example, input value -12345.67 will produce buf = "1234567", *dec = 4, and *sign = -1. NOTE: The output character buffer is NOT zero-terminated. The buffer is NOT padded with zeros. This function DOES NOT check 'value' for being finite or not-a-number; if it is, the result is unpredictable. This function is less precise for a small fraction of values (the difference is in the last significant digit) than its 'DoubleToString' siblings, but it is much faster.

Parameters

value Double value to be converted. precision Maximum number of significant digits to preserve. If precision is greater than maximum for the current platform, it will be truncated to this maximum. buf Put result of the conversion into this buffer. buf_size Size of buffer, "buf". dec Exponent sign Sign of the value

Returns

The number of bytes written into "buf".

Definition at line 2442 of file ncbistr.cpp.

Referenced by CObjectOStreamAsn::WriteDouble2().

Convert double to string with specified precision and put the result into a character buffer, in scientific format.

NOTE: The output character buffer is NOT zero-terminated. The decimal separator is dot, always. This function DOES NOT check 'value' for being finite or not-a-number; if it is, the result is unpredictable. This function is less precise for a small fraction of values (the difference is in the last significant digit) than its 'DoubleToString' siblings, but it is much faster.

Parameters

value Double value to be converted. precision Maximum number of significant digits to preserve. If precision is greater than maximum for the current platform, it will be truncated to this maximum. buf Put result of the conversion into this buffer. buf_size Size of buffer, "buf".

Returns

The number of bytes written into "buf".

Definition at line 2653 of file ncbistr.cpp.

Referenced by CObjectOStreamAsnBinary::WriteDouble2(), CObjectOStreamJson::WriteDouble2(), and CObjectOStreamXml::WriteDouble2().

template<typename _TChar >

Return true if the represented string is empty (i.e., the length is zero)

Definition at line 334 of file tempstr.hpp.

References CTempString::m_Length.

Referenced by CTabDelimitedValidator::_OperateRows(), CTabDelimitedValidator::_ProcessHeader(), CDefLineJoiner::Add(), CHttpFormData::AddEntry(), CReadUtil::AddGeneOntologyTerm(), CHttpFormData::AddProvider(), SAccGuide::AddRule(), CBuildDatabase::AddSequences(), CNCBlobKey::Assign(), CObjectIStreamXml::BeginClassMember(), CGRPCServerCallbacks::BeginRequest(), BOOST_AUTO_TEST_CASE(), CObjectIStreamXml::CloseStackTag(), NStr::CompareCase(), NStr::CompareNocase(), CDBLB_ServiceMapper::ConfigureFromRegistry(), CNCActiveHandler::CopyPurge(), CPerfLogGuard::CPerfLogGuard(), CSeqTableSetAnyObjField::CSeqTableSetAnyObjField(), CShortReadFastaInputSource::CShortReadFastaInputSource(), CDiff::Diff(), CStrTokenize< TStr, TV, TP, TCount, TReserve >::Do(), CFindPattern::Find(), CSourceModParser::FindMod(), g_HttpPost(), g_HttpPut(), CDeflineGenerator::GenerateDefline(), CBlobStoreBase::GenReadQuery(), CWGSDb_Impl::GetAccSeq_id(), CWGSScaffoldIterator::GetAccSeq_id(), CWGSProteinIterator::GetAccSeq_id(), CWGSScaffoldIterator::GetGeneralOrPatentSeq_id(), CWGSDb_Impl::GetGeneralSeq_id(), CBamAlignIterator::GetMatchAlign(), CMemorySrcFileMap::GetMods(), CWGSDb_Impl::GetProtAccRanges(), CWGSProteinIterator::GetSeq_descr(), GetTwoFieldSubfield(), CSeq_feat::HasExceptionText(), CNCBlobKeyLight::IsICacheKey(), CNCBlobAccessor::IsPurged(), CCSraAlignIterator::IsSetName(), CCSraShortReadIterator::IsSetName(), CNCBlobKeyLight::IsValid(), CNCBlobKeyLight::KeyForLogs(), CStructuredCommentsReader::LoadComments(), CStructuredCommentsReader::LoadCommentsByRow(), CForeignContaminationScreenReportReader::LoadFile(), make_server(), CWGSDb_Impl::NormalizePathOrAccession(), SRegSynonyms::NotFound(), CPubseqGatewayApp::OnGetNA(), CRowReaderStream_IANA_CSV::OnNextLine(), CRowReaderStream_NCBI_TSV::OnNextLine(), CObjectIStreamXml::OpenStackTag(), CTestNameToInfoMapLoader::operator()(), CNetServProtoParserBase::ParseCommand(), CFastaReader::ParseGapLine(), CSeq_id::ParseIDs(), CFeatureTableReader_Imp::ParseInitialFeatureLine(), CWGSClient::ParsePSGBlobId(), CWGSClient::ParsePSGId2Info(), CFastaDeflineReader::ParseRange(), ParseTrack(), CMemoryLineReader::PeekChar(), CBufferedLineReader::PeekChar(), CHttpSession_Base::Post(), CPerfLogger::Post(), CAltValidator::ProcessQueue(), CNCBlobAccessor::Purge(), CHttpSession_Base::Put(), CGFFReader::Read(), CColumnarVCFReader::ReadHeader(), CFastaReader::ReadOneSeq(), CFeatureTableReader_Imp::ReadSequinFeatureTable(), CObjectIStreamXml::ReadUndefinedAttributes(), CTabDelimitedValidator::RegisterAliases(), CRegexpUtil::Replace(), CRegexpUtil::ReplaceRange(), SGridWorkerNodeImpl::Run(), s_AddVoucherAndIsolate(), s_GetVDBSeverityTag(), s_MatchExcludeMask(), s_SplitVersion(), NStr::Sanitize(), CTL_LangCmd::Send(), CTextseq_id::Set(), CSeq_id::Set(), CPDB_seq_id::SetChainIdentifiers(), sx_AddAnnotBytes(), sx_AddDescrBytes(), CRowReaderStream_Excel_CSV::Tokenize(), CRowReaderStream_IANA_TSV::Tokenize(), transform_range(), CRowReaderStream_IANA_CSV::Translate(), CRowReaderStream_Excel_CSV::Validate(), CRowReaderStream_IANA_CSV::Validate(), SWGSCreateInfo::x_AddDescr(), CFeatureTableReader_Imp::x_AddGBQualToFeature(), CSourceFeatureItem::x_AddQuals(), CWriteDB_IsamIndex::x_AddTextId(), CDeflineGenerator::x_AdjustProteinTitleSuffix(), CDeflineGenerator::x_AdjustProteinTitleSuffixIdx(), CSourceModParser::x_ApplyMods(), CNCMessageHandler::x_AssignCmdParams(), CDeflineGenerator::x_DescribeClones(), CDiff::x_Diff(), x_FirstWord(), x_GetDivisionProc(), x_GetDivisionProcIdx(), CAuthor::x_GetLabelV2(), CDeflineGenerator::x_GetModifiers(), CPubseqGatewayApp::x_GetSNPScaleLimit(), CPubseqGatewayApp::x_GetTimeSeries(), CBioseqIndex::x_InitDescs(), CSeqTableInfo::x_Initialize(), CBioseqIndex::x_InitSource(), CRowReaderStream_Excel_CSV::x_IsNull(), CString_constraint::x_IsWholeWordMatch(), CDB_Numeric::x_MakeFromString(), CFeatureSearchJob::x_Match(), CRegexpTemplateTester::x_Op_Skip(), CDeflineGenerator::x_OrganelleName(), CTableImportDataSource::x_ParseEntry(), CFeatureTableReader_Imp::x_ParseFeatureTableLine(), CTableImportDataSource::x_ParseQuotedEntry(), CGFFReader::x_ParseStructuredComment(), CGFFReader::x_ParseTypeComment(), CPubseqGatewayApp::x_ProcessCommonGetAndResolveParams(), CNetScheduleHandler::x_ProcessMsgBatchHeader(), CNCMessageHandler::x_PurgeToNextPeer(), CShortReadFastaInputSource::x_ReadFastaOneSeq(), CShortReadFastaInputSource::x_ReadFastc(), CShortReadFastaInputSource::x_ReadFastqOneSeq(), CFeature_table_reader::x_ReadFeatureTable(), CNCActiveHandler::x_ReadHttpDataPrefix(), CNCActiveHandler::x_ReadSyncStartExtra(), CMemorySrcFileMap::x_RegisterLine(), CDeflineGenerator::x_SetBioSrc(), CDeflineGenerator::x_SetFlags(), CDeflineGenerator::x_SetFlagsIdx(), CDeflineGenerator::x_SetSuffix(), CDeflineGenerator::x_SetTitleFromBioSrc(), CDeflineGenerator::x_SetTitleFromGPipe(), CDeflineGenerator::x_SetTitleFromMap(), CDeflineGenerator::x_SetTitleFromNC(), CDeflineGenerator::x_SetTitleFromNM(), CDeflineGenerator::x_SetTitleFromNR(), CDeflineGenerator::x_SetTitleFromProtein(), CDeflineGenerator::x_SetTitleFromProteinIdx(), CDeflineGenerator::x_SetTitleFromSegSeq(), CDeflineGenerator::x_SetTitleFromWGS(), CWig2tableApplication::x_SkipWS(), CNCMessageHandler::x_StartCommand(), CFeatureTableReader_Imp::x_StringToLongNoThrow(), CRegexpTemplateTester::x_SubstituteVars(), CFeatureTableReader_Imp::x_TokenizeLenient(), CRequestContext::x_UpdateStdContextProp(), CRequestContext::x_UpdateStdPassThroughProp(), CGff2Reader::xAssignAnnotId(), CReaderBase::xIsCommentLine(), and CGtfReader::xIsCommentLine().

Return an iterator to the string's ending position (one past the end of the represented sequence)

Definition at line 306 of file tempstr.hpp.

References CTempString::m_Length, and CTempString::m_String.

Referenced by BOOST_AUTO_TEST_CASE(), CEndpointKey::CEndpointKey(), CSeq_id::CheckLocalID(), CSourceModParser::CompareKeys(), CTempString::find_first_not_of(), CTempString::find_first_of(), CCSraAlignIterator::GetMatchAlign(), CCSRARefSeqInfo::LoadAnnotPileupChunk(), CCSraAlignIterator::MakeFullMismatch(), CDBParamVariant::MakeName(), CDBParamVariant::MakePlainName(), CMemoryLineReader::operator++(), CDB_Numeric::x_MakeFromString(), and CFeatureTableReader_Imp::x_TokenizeLenient().

Check if a string ends with a specified character value.

Parameters

str String to check. end Character value to check for. use_case Whether to do a case sensitive compare(default is eCase), or a case-insensitive compare (eNocase) while checking.

Definition at line 5431 of file ncbistr.hpp.

References NStr::eCase, last(), str(), tolower(), and toupper().

Check if a string ends with a specified suffix value.

Parameters

str String to check. end Suffix value to check for. use_case Whether to do a case sensitive compare(default is eCase), or a case-insensitive compare (eNocase) while checking.

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 5424 of file ncbistr.hpp.

References NStr::Equal(), CTempString::size(), and str().

Referenced by CSeqTableLocColumns::AddColumn(), AddComment(), CPCRSetList::AddFwdName(), CPCRSetList::AddFwdSeq(), CCommentItem::AddPeriod(), CPCRSetList::AddRevName(), CPCRSetList::AddRevSeq(), AdjustSingleFeature(), AffilStreetEndsWith(), NMacroUtil::ApplyAuthorNames(), CExpansionRule::ApplyRule(), CEditSubpanel::ApplyToAll(), CEditSubpanel::ApplyToSelected(), CFieldChoicePanel::AutoMatchRNA(), CFieldChoicePanel::AutoMatchSrc(), BOOST_AUTO_TEST_CASE(), CalculateEffectiveTranslationLengths(), CCDSTranslationProblems::CalculateTranslationProblems(), CAutoDefMiscCommentClause::CAutoDefMiscCommentClause(), CAutoDefMobileElementClause::CAutoDefMobileElementClause(), CAutoDefParsedIntergenicSpacerClause::CAutoDefParsedIntergenicSpacerClause(), CAutoDefParsedRegionClause::CAutoDefParsedRegionClause(), CAutoSqlCustomField::CAutoSqlCustomField(), CheckStrainReply(), NMItemData::CheckTableNameAndColumns(), CLatLonMap_Base::CLatLonMap_Base(), CGridCommandLineInterfaceApp::Cmd_Discover(), CMsvcPrjFilesCollector::CollectSources(), CPepXML::ConvertDouble(), CValidErrItem::ConvertToErrCode(), CProjectsLstFileFilter::ConvertToMask(), CDirEntry::ConvertToOSPath(), CSrcTableColumnBaseFactory::Create(), CFeatureSeqTableColumnBaseFactory::Create(), CreateActionBiosource(), CMacroWordSubstitutionDlg::CreateControls(), CSequenceEditingEventHandler::DeleteSpecificStructuredComment(), SAppProjectT::DoCreate(), DoesCodingRegionEndWithStopCodon(), CAutoDefFeatureClause::DoesmRNAProductNameMatch(), CStringConstraint::DoesTextMatch(), EndsWithBadCharacter(), CSimpleEnvRegMapper::EnvToReg(), edirect::Execute(), CCleanup::ExtendToStopIfShortAndNotPartial(), CMapperQueryOptionsArgs::ExtractAlgorithmOptions(), CBlastDatabaseArgs::ExtractAlgorithmOptions(), CStdCmdLineArgs::ExtractAlgorithmOptions(), CSubSource::FixDateFormat(), ICitationBase::FixPages(), CName_std::FixSuffix(), CFlatSiteQVal::Format(), CFlatSubSourcePrimer::Format(), CGBSeqFormatter::FormatAccession(), CGenbankFormatter::FormatCache(), CGBSeqFormatter::FormatDefline(), CGenbankFormatter::FormatOrigin(), CGBSeqFormatter::FormatReference(), CGBSeqFormatter::FormatSource(), g_IsMasterAccession(), g_ServerInfoToJson(), CScore_CdsInternalStops::Get(), CEditSequenceEnds::GetCommand(), CStaticDataType::GetFullCType(), NMItemData::GetFuncFromTable_Depr(), GetIStream(), SrcEditDialog::GetLabelForTitle(), CAuth_list::GetLabelV2(), CBulkLocationPanel::GetLocForBioseq(), GetRetranslateCDSCommand(), NMItemData::GetRNASpecificFields(), GetRptTypeValue(), CAutoDefModifierCombo::GetSourceDescriptionString(), GetStrainCandidates(), GetTargetedLocusNameConsensus(), CDB_BigDateTime::GetTimeFormat(), GetTitle(), CBlastQuerySourceBioseqSet::GetTitle(), CGeneralIDField::GetVal(), HasNoStop(), CProjectsLstFileFilter::InitFromString(), CLocationEditPolicy::Interpret3Policy(), CGff2Reader::IsAlignmentData(), CGff2Record::IsAlignmentRecord(), CSeqUtils::IsCoverageAnnotName(), CSymResolver::IsDefine(), SMakeProjectT::IsMakeAppFile(), SMakeProjectT::IsMakeDllFile(), SMakeProjectT::IsMakeLibFile(), IsProducedByDatatool(), NMacroUtil::IsStructVoucherPart(), CMessageHandlerThrowOnError::IsTaxidQuery(), CAutoDefFeatureClause_Base::IsuORF(), CPCRPrimerSeq::IsValid(), CRequestContext::IsValidSessionID(), JoinString(), CAutoDefFeatureClause_Base::ListClauses(), CCompoundRWRegistry::LoadBaseRegistries(), FeatUtil::MakeCodeBreak(), CAutoDefParsedIntergenicSpacerClause::MakeRegion(), ICitationBase::MaybeAddSpace(), PssmMaker::modifyQuery(), CCountries::NewFixCountry(), NMItemData::NormalizeFieldForFeatPanel(), CComment_rule::NormalizePrefix(), NSTValidateProlongValue(), SGridWorkerNodeImpl::OfflineRun(), CELinkParser< T >::OnEndElement(), CJournalPanel::OnJournalPmidTextUpdated(), CMacroWordSubstitutionDlg::OnOpenFile(), NMItemData::OnSelectFeature(), CLocationListCtrl::OnSortClick(), CTestNameToInfoMapLoader::operator()(), PPredDbTagByName::operator()(), CXmlFormat::operator()(), operator<<(), CHttpCookie::Parse(), CGb_qual::ParseExperiment(), CAutoDefParsedtRNAClause::ParseString(), CFeatureTableReader_Imp::ParseTrnaExtString(), CMakefilePatch::PatchTreeMakefiles(), PortalBookURLToCCddBookRef(), CConnTest::PostCheck(), CConnTest::PreCheck(), CTabularFormatter_StopCodonChanges::Print(), CAutoDefFeatureClause_Base::PrintClause(), PrintSAM(), CDataTypeModule::PrintSampleDEF(), PrintSAMUnaligned(), CNewCleanup_imp::ProtrefBC(), CMsvcProjectMakefile::Redefine(), RelaxedMatch(), RemoveAffilStreetEnd(), CSubSource::RemoveCultureNotes(), COrgrefProp::RemoveOrgrefProp(), CCommentItem::RemovePeriodAfterURL(), CStrainRequest::RequireTaxname(), COrgMod::RescueInstFromParentheses(), CRetranslateCDS::RetranslateCDSCommand(), CAddGlobalCodeBreak::RetranslateCDSCommand(), CExtendCDSToStop::RetranslateCDSCommand(), CNewCleanup_imp::RnaFeatBC(), CNewCleanup_imp::RnarefBC(), CTLSApp::Run(), CRunTestApplication::Run(), CEditingBtnsPanel::RunMacroWithReport(), CStructuredCommentPanel::s_AddPoundSigns(), s_AddReplacedExt(), s_BaseDir(), CMacroFunction_AuthorFix::s_BuildName(), s_CheckValueForTID(), CCleanup::s_CleanupNameStdBC(), s_CollectRelPathes(), s_DoUSAStateCleanup(), CMacroFunction_EditStringQual::s_EditText(), ApplyCDSFrame::s_FindMatchingFrame(), CMacroFunction_ApplyCDSFrame::s_FindMatchingFrame(), IAuthorEditor::s_FixInitialsNew(), s_FormatCitGen(), s_FormatSecondaryAccessions(), s_GetAuthorNames(), s_GetMiRNAProduct(), CMacroFunction_PubFields::s_GetObjectsFromPersonID(), CCmdCreateCDS::s_GetProductSequence(), s_IsAllDigitsOrPeriods(), s_IsAllowedOrigin(), s_IsCompoundRptTypeValue(), s_IsGenbankMasterAccession(), s_IsState(), CMacroFunction_StringConstraints::s_IsSynonymFile(), s_IsUndefinedSpecies(), s_MatchesBoundary(), s_NormalizeTokens(), s_NoteFinalize(), CSingleAuthorPanel::s_ParseInitialsFromName(), s_ParseParentQual(), s_ParseTRnaFromAnticodonString(), s_QualVectorToNote(), s_RemovePeriod(), CStructuredCommentPanel::s_RemovePoundSigns(), s_RemoveSuffixFromNames(), NMacroUtil::s_SetInitials(), s_SetTrnaProduct(), s_SplitKV(), s_StringToCodeBreak(), s_TitleEndsInOrganism(), s_TitleFromSegment(), s_UpdateTarget(), s_WillContinue(), Sequence::Sequence(), CPubField::SetAuthorField(), CCleanup::SetCDSPartialsByFrameAndTranslation(), CApplyAuthorsTreeItemData::SetData(), CRNAFieldNamePanel::SetFieldName(), CDualRNAFieldNamePanel::SetFieldName(), CSourceFieldNamePanel::SetFieldName(), CDualRNAFieldNamePanel::SetFieldName2(), CAutoDefParsedClause::SetMiscRNAWord(), CAutoSqlCustomField::SetUserField(), CEditingActionDescAuthorFirstName::SetValue(), sGetReader(), CBioSource::ShouldIgnoreConflict(), NSearchFeatPanel::SplitPosOrRange(), sRunTest(), CUnculTaxTool::StandardFixes(), CMacroLib::StoreSynonymList(), CSymResolver::StripSuffix(), sUpdateCase(), CMacroFunction_ConvertStringQual::TheFunction(), CMacroFunction_ConvertRNARelQual::TheFunction(), CMacroFunction_ParseStringQual::TheFunction(), CMacroFunction_ParseRNARelQual::TheFunction(), CMacroFunction_AddParsedText::TheFunction(), CMacroFunction_CopyStringQual::TheFunction(), CMacroFunction_CopyRNARelQual::TheFunction(), CLocationListCtrl::TransferDataFromWindow(), CSeqTranslator::TranslateToProtein(), TrimStopsFromCompleteCDS(), SNetStorage::SConfig::Validate(), CSingleFeatValidator::ValidateCharactersInField(), CValidError_imp::ValidateCitations(), CValidError_bioseqset::ValidateNucProtSet(), CValidError_bioseq::ValidateSeqDescContext(), CValidError_imp::ValidateSubSource(), CMacroFunction_AddPubAuthor::x_AddAuthor(), CAutoDefFeatureClause_Base::x_AddOnetRNAIntergenicSpacerElement(), CNewCleanup_imp::x_AddReplaceQual(), CFeatureItem::x_AddRptUnitQual(), CDeflineGenerator::x_AdjustProteinTitleSuffix(), CDeflineGenerator::x_AdjustProteinTitleSuffixIdx(), CStreamLineReader::x_AdvanceEOLCRLF(), CTar::x_Append(), CTrackConfigManager::x_AppendKeyDisplayOptions(), CAppendModToOrg::x_ApplyToBioSource(), CGenbankFormatter::x_Authors(), CCleanupApp::x_BatchExtendCDS(), CNewCleanup_imp::x_BondEC(), CNewCleanup_imp::x_CanRemoveGenbankBlockSource(), CFeaturePropagator::x_CdsCleanupPartials(), CDiffList::x_CleanupAndMerge_SingleEdits(), CMacroInterpreter::x_ConvertFeatQualValidateArgs(), CTaxon1::x_ConvertOrgrefProps(), CCgiEntryReaderContext::x_DelimitedRead(), CImportFeatTable::x_DoImportCDS(), CAdjustFeaturesForGaps::x_DoOne(), CAutoDefFeatureClause::x_FindNoncodingFeatureKeywordProduct(), CCommentItem::x_GatherDescInfo(), CReferenceItem::x_GatherRemark(), CAutoDefFeatureClause::x_GetDescription(), CMacroEditorContext::x_GetGUIFieldForRNA(), CFlatItemFormatter::x_GetKeywords(), CAuthor::x_GetLabelV2(), CParseQualTreeItemData::x_GetParsedTextDescription(), CLocationListCtrl::x_GetRowData(), CAutoDefFeatureClause_Base::x_GetTRNAIntergenicSpacerType(), CCgiRequest::x_Init(), CGencollIdMapper::x_Init(), CConn_FTPDownloadStream::x_InitDownload(), CSearch_func::x_InWordBeforeCytochromeOrCoenzyme(), CTraversalNode::x_LoadDataFromASNNode(), CNetScheduleHandler::x_MakeSureSingleEOR(), CTraversalNode::x_MergeNames(), CGFFReader::x_MergeRecords(), CDiscRepApp::x_ParseDirectory(), CNewCleanup_imp::x_PostProcessing(), CMacroInterpreter::x_PostProcessRmvDbxref(), CMacroInterpreter::x_PostProcessSetException(), CMakeBlastDBApp::x_ProcessInputData(), CAsn2FastaApp::x_ProcessISubdirectory(), CNSTServiceRegistry::x_ReadServiceProperties(), CGencollIdMapper::x_RecursiveSeqFix(), CCountries::x_RemoveDelimitersFromEnds(), x_RepairCountryName(), CReportTrim::x_RetranslateCDS(), CNewCleanup_imp::x_RRNANameBC(), variation_ref::CHgvsParser::x_SeqLocToStr(), CMasterContext::x_SetBaseName(), CFeatureGenerator::SImplementation::x_SetComment(), CCommentItem::x_SetCommentWithURLlinks(), CMacroAdvStringConstraintPanel< T >::x_SetControls(), CUnculturedTool::x_StandardFixes(), CMatchFeatureTableDlg::x_TokenMatch(), CCDSTranslationPanel::x_Translate(), CFeatureTableReader_Imp::x_TryToParseOffset(), CProtValidator::x_ValidateProteinName(), CMakeBlastDBApp::x_VerifyInputFilesType(), CGtfReadRecord::xAssignAttributesFromGff(), CBedReader::xDetermineLikelyColumnCount(), CGff3LocationMerger::xGetLocationIds(), CGff3LineReader::xInitializeAttributes(), CGtfLineReader::xInitializeAttributes(), CAlnScannerSequin::xIsSequinOffsetsLine(), CGff2Record::xNormalizedAttributeValue(), CVcfReader::xProcessMetaLineFilter(), CVcfReader::xProcessMetaLineFormat(), CVcfReader::xProcessMetaLineInfo(), CGff3Reader::xUpdateAnnotFeature(), and CNewCleanup_imp::xUpdateSeqfeatCitGenLabel().

Test for equality of two strings – char* version.

Parameters

s1 String to be compared – operand 1. s2 String to be compared – operand 2. use_case Whether to do a case sensitive compare (default is eCase), or a case-insensitive compare (eNocase).

Returns

• 0, if s1 == s2;
• Negative integer, if s1 < s2;
• Positive integer, if s1 > s2.

See also

EqualNocase(), Equal() versions with similar argument types.

Definition at line 5394 of file ncbistr.hpp.

References NStr::eCase, NStr::EqualCase(), and NStr::EqualNocase().

Test for equality of a substring with another string.

Parameters

s1 String containing the substring to be compared. pos Start position of substring to be compared. n Number of characters in substring to be compared. s2 String (char*) to be compared with substring. use_case Whether to do a case sensitive compare(eCase – default), or a case-insensitive compare (eNocase).

Returns

• true, if s1[pos:pos+n) equals s2;
• false, otherwise.

See also

Other forms of overloaded Equal() with differences in argument types: char* vs. CTempString[Ex]

Examples

/home/coremake/doxygen/cxx/include/corelib/ncbistr.hpp.

Definition at line 5378 of file ncbistr.hpp.

References NStr::eCase, NStr::EqualCase(), NStr::EqualNocase(), n, and CTempString::substr().

Referenced by CUnculTaxTool::AddBioSource(), CSubmissionPrepMainPanel::AddField(), CAutoDefFeatureClause::AddGene(), AddGoodImpFeat(), AddGoTermToList(), AddMiscRNAFeatures(), AddStructuredCommentToAttributes(), CSingleSequencePanel::AddToUpdateCommand(), AdjustDBLinkFieldName(), CTaxValidationAndCleanup::AdjustOrgRefsWithTaxLookupReply(), CFeatGapInfo::AdjustProteinSeq(), AlreadyHasFeature(), AnalyzeField(), CEditPubDlg::AppendToErrorMsg(), ApplyChimeraValuesTableToSeqEntry(), CGAssemblyOtherPanel::ApplyCommand(), CGAssemblyPanel::ApplyCommand(), ApplyCommentValuesTableToSeqEntry(), CGenomeInfoPanel::ApplyDescriptor(), ApplyFeatureSeqTableToSeqEntry(), SrcEditDialog::ApplySrcTableToSeqEntry(), CSpecificHostMapForFix::ApplyToOrg(), AreAllColumnValuesTheSame(), CCleanup::AreBioSourcesMergeable(), CAutoDefModifierCombo::AreFeatureClausesUnique(), Asn2gnbkCompressSpaces(), CSubSource::AutoFix(), CFieldChoicePanel::AutoMatchRNA(), CValidator::BadCharsInAuthorName(), CNewCleanup_imp::BiosourceBC(), BioSourceFromImpFeat(), BOOST_AUTO_TEST_CASE(), BOOST_FIXTURE_TEST_CASE(), BuildChimeraValuesTableFromSeqEntry(), CCDSTranslationProblems::CalculateTranslationProblems(), CAutoDefMobileElementClause::CAutoDefMobileElementClause(), CAutoDefSatelliteClause::CAutoDefSatelliteClause(), CDBInterfacesFileConnParams::CDBInterfacesFileConnParams(), CGoTermSortStruct::CGoTermSortStruct(), CheckDate(), CheckQual(), CheckStrings(), CLatLonMap_Base::CLatLonMap_Base(), CAutoDefFeatureClause_Base::ClauseFromPhrase(), CCitPatCleaner::Clean(), CCleanup::CleanupCollectionDates(), ClearGoTermValue(), CStructCommFieldValuePair::ClearVal(), CStructCommDBName::ClearVal(), CStructCommFieldName::ClearVal(), CStructuredCommentField::ClearVal(), CAutoDefFeatureClause_Base::Consolidate(), CConvertCDSToMiscFeat::Convert(), CValidErrItem::ConvertToErrCode(), SrcEditDialog::CountColumnRowConflicts(), CountColumnRowConflicts(), CountColumnValueConflicts(), CMiscSeqTableColumn::CountConflicts(), CountDefLineConflicts(), CountGoTerms(), CAutoDefFeatureClause_Base::CountUnknownGenes(), CSrcTableColumnBaseFactory::Create(), CFeatureGenePanel::CreateControls(), CSpecificHostRequest::CSpecificHostRequest(), CNewCleanup_imp::DbtagBC(), CUser_field::DeleteField(), CDbxrefPanel::DeleteTaxonRef(), CAutoDefFeatureClause_Base::DisplayAlleleName(), DoesColumnHaveValue(), CAutoDefFeatureClause::DoesmRNAProductNameMatch(), CStringConstraint::DoesTextMatch(), NStr::EndsWith(), CName_std::ExtractSuffixFromLastName(), SrcEditDialog::FindBadColumns(), CAutoDefFeatureClause::FindBestParentClause(), CComment_rule::FindFieldRuleRef(), CAutoDefFeatureClause_Base::FindGeneProductName(), FindNonUniqueStrings(), FindSeqTableColumnByName(), CSubSource::FixAltitude(), CSubSource::FixCapitalization(), CBioSource::FixEnvironmentalSample(), CSeqFeatData::FixImportKey(), CGb_qual::FixMobileElementValue(), CSubSource::FixSexQualifierValue(), COrgMod::FixStructuredVoucher(), SrcEditDialog::FixTableAfterImport(), FixTableAfterImport(), g_GetConfigFlag(), CNewCleanup_imp::GBQualSeqFeatBC(), CNewCleanup_imp::GenerefBC(), CValidError_feat::GetAccessionsFromInferenceString(), IEditingAction::GetActionCommand(), GetAvailableFields(), CBioSource::GetBioprojectLocation(), GetBiosampleStatus(), GetBioSampleStatusFromNode(), GetCitSubmit(), CSubPrep_panel::GetCitSubPub(), CConvertCdsToMiscFeat::GetCommand(), CConvertFeatDlg::GetCommand(), CEditPubDlg::GetCommand(), CVirusNonCodingFeaturesPanel::GetCommand(), CTMgr_ClientInfo::GetContextAttr(), CAutoDefSourceGroup::GetDefaultExcludeSp(), CEditObjectSeq_desc::GetDescriptorType(), GetEmblBlockXref(), CValidErrorFormat::GetFeatureContentLabel(), GetFieldDiffs(), GetFieldDiffsFromNameValLists(), CUser_field::GetFieldRef(), CUser_object::GetFieldRef(), CPrintOptions::GetFormatFromName(), CConvertFeatureTreeItemData::GetFunction(), CBioSource::GetGenomeByOrganelle(), GetGoTermErrors(), SrcEditDialog::GetLabelForTitle(), CMatchCDS::GetNummRNA(), CBioSource::GetOriginByString(), CStructuredCommentsReader::CStructComment::GetPrefix(), GetPrefixOrSuffixType(), CWGSDb_Impl::GetProtAccRowId(), CComment_rule::GetStructuredCommentPrefix(), GetTargetedLocusNameConsensus(), CStdAnnotTypes::GetTypeAsInt(), CStructCommFieldValuePair::GetVals(), CStructCommFieldName::GetVals(), CStructuredCommentField::GetVals(), CInferencePanel::GetValue(), CApplyStructCommentTreeItemData::GetVariables(), CAutoDefFeatureClause_Base::GroupSegmentedCDSs(), CValidError_imp::HandleTaxonomyError(), HasAmplifiedWithSpeciesSpecificPrimerNote(), HasCultureCollectionForATCCStrain(), HasMod(), HasStrainForATCCCultureCollection(), CLatLonMap_Base::IsClosestToLatLon(), IsCommonName(), CSubPrepIntroPanel::IsComplete(), CStructuredCommentField::IsEmpty(), CAutoDefFeatureClause::IsExonWithNumber(), CAutoDefFeatureClause_Base::IsGeneMentioned(), CStringConstraint::IsInRange(), CGb_qual::IsLegalInferenceDatabase(), CGb_qual::IsLegalMobileElementValue(), CAsnBinCompressed::IsLZOStream(), IsMappablePair(), IsMatchingIdMissing(), IsMet1(), CAutoDefMobileElementClause::IsOptional(), IsOrgNotFound(), CSubSource::IsPlasmidNameValid(), CStdAnnotTypes::IsPredefinedDescr(), CStdAnnotTypes::IsPredefinedDescrForType(), CAutoDefFeatureClause::IsPromoter(), CAutoDefPromoterAnd5UTRClause::IsPromoterAnd5UTR(), IsRBS(), IsSiteRef(), CStructuredCommentField::IsStructuredCommentForThisField(), COrgMod::IsStructuredVoucherValid(), CAutoDefSourceDescription::IsTrickyHIV(), CDiscrepancyContext::IsUnculturedNonOrganelleName(), CStructuredCommentField::IsValid(), CComment_rule::IsValid(), CSatelliteTypeNameColumn::IsValid(), CAutoDefFeatureClause_Base::IsValidFeatureClausePhrase(), CSubSource::IsValidSexQualifierValue(), CStdAnnotTypes::IsValidTypeStr(), CComment_rule::KeywordForPrefix(), CAutoDefFeatureClause_Base::ListClauses(), CTaxValidationAndCleanup::ListTaxLookupErrors(), CCleanup::MakeIRDFeatsFromSourceXrefs(), MakemRNAforCDS(), CExpectedError::Match(), MatchArrayString(), CEditingActionDescUserObject::Modify(), CEditingActionDescStructCommFieldName::Modify(), CEditingActionDescLocalId::Modify(), CEditingActionDescComment::Modify(), CNewCleanup_imp::MoveCitationQuals(), CNewCleanup_imp::MoveDbxrefs(), CNewCleanup_imp::MoveStandardName(), CCountries::NewFixCountry(), CCleanup::NormalizeGeneQuals(), CAutoDefFeatureClause::OkToGroupUnderByLocation(), CncRNASubPanel::OnChoice5Selected(), CVirusMoleculeQuestionsPanel::OnDataChange(), CSubmissionPrepMainPanel::OnEditSequencingTechnologyClicked(), CSrcModPanel::OnLeftUp(), CRNANamePanel::OnRNATypeSelected(), CBulkRNAAddPanel::OnSelectRNAType(), CAlignRNAAddPanel::OnSelectRNAType(), CRefGeneTrackLocListPanel::OnTypeChoiceSelected(), SKeywordChecker::operator()(), SRemovableOldname::operator()(), SRemovableOrgModNote::operator()(), STitleMatchString::operator()(), CAutoDefFeatureClause_Base::PluralizeInterval(), CGBQualPanel::PopulateGBQuals(), CComment_rule::PrefixForKeyword(), ProcessBiosampleStatusNode(), CBiosampleChkApp::ProcessOneDirectory(), CNewCleanup_imp::ProtRefEC(), CGene_ref::RefersToSameGene(), CAutoDefWithTaxonomy::RegeneratePopsetTitles(), CAutoDef::RegenerateSequenceDefLines(), RelaxedMatch(), RemoveDbxref(), CUser_object::RemoveNamedField(), CBioSource::RemoveOrgMod(), RemoveProblemsColumn(), CBioSource::RemoveSubSource(), CReorderStructuredComment::reorder_comment_by_rule(), CComment_rule::ReorderFields(), RescueProtProductQual(), impl::CDriverContext::ResetEnvSybase(), CEditingActionDescGenomeProjectId::ResetValue(), CEditingActionDescStructCommDbName::ResetValue(), RevComp(), CBiosampleChkApp::Run(), CMytestApplication::Run(), s_AffilSame(), s_AltitudeIsValid(), s_AreDifferentVariations(), s_AreFeatureClausesUnique(), s_AreFeatureLabelsSame(), s_AreGBQualsIdentical(), s_ArePrimersUnique(), s_AuthorListsSame(), s_AuthorsSame(), s_CleanCDDFeature(), CCleanup::s_CleanupGeneOntology(), CCleanup::s_CleanupGenomeAssembly(), CCleanup::s_CleanupNameStdBC(), CCleanup::s_CleanupStructuredComment(), s_CompleteGenomeNeedsChromosome(), s_CompressRunsOfSpaces(), s_DoUSAStateCleanup(), s_DuplicatesBiosource(), s_ExpandThisQual(), s_FeatureHasEvidenceOrInferenceQuals(), s_FindColumn(), CCleanup::s_FixEtAl(), s_FixncRNA(), s_FixRNAOtherByName(), s_FixtmRNA(), s_GeneralTagsMatch(), ApplyCDSFrame::s_GetFrameFromName(), s_GetMrnaProteinLink(), s_GetPrefixForStructuredComment(), s_HasMatchingGBMod(), s_HasOrgMod(), s_HtmlizeStructuredCommentData(), s_IsAllowedOrigin(), s_IsBioSample(), s_IsGenomeAnnotationStart(), s_IsIllegal(), s_IsPhage(), s_IsReportableStructuredComment(), s_IsRNASpacer(), s_IsrRNA(), s_IsState(), s_IsTPAAssemblyOkForBioseq(), s_IsValidRecombinationClass(), s_IsValidRegulatoryClass(), s_MakeCommonStringList(), s_MatchOrgname(), CMacroFunction_SetStructCommDb::s_MoveSuffixToTheEnd(), s_Name_stdsSame(), s_NameCloseEnough(), s_NameCloseEnoughC(), CGenusSpeciesFixup::s_PermuteTaxname(), s_ProcessedFromKey(), s_ProcessOrgRefMapLine(), CMacroFunction_RefreshDefline::s_RefreshDeflineCommand(), s_ReplaceListFromQuals(), s_SetMolinfoTechFromString(), s_ShouldIgnoreStructuredCommentFieldDiff(), s_TestOneWrongQual(), s_UpdateSubtype(), SetEnvSampleFixAmplifiedPrimers(), CUser_object::SetFieldRef(), CUser_field::SetFieldRef(), SetGoTermValue(), CStructuredCommentField::SetVal(), CBioSource::ShouldIgnoreConflict(), SortUniqueStrings(), NStr::StartsWith(), CDiscrepancyVisitorImpl< _Name >::Summarize(), TestBulkSpecificHostFixList(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_ParseToStructComm::TheFunction(), CGBQualPanel::TransferDataFromWindow(), CncRNASubPanel::TransferDataFromWindow(), CSingleGbQualSubPanel::TransferDataFromWindow(), CtmRNASubPanel::TransferDataFromWindow(), CGAssemblyOtherPanel::TransferDataToWindow(), CRefGeneTrackLocListPanel::TransferDataToWindow(), CSingleGbQualSubPanel::TransferDataToWindow(), CtmRNASubPanel::TransferDataToWindow(), CGBQualStringListValidator::TransferFromWindow(), CGBQualStringListValidator::TransferToWindow(), TrimSpacesSemicolonsAndCommas(), COrg_ref::UpdateFromTable(), UpdatemRNAProduct(), CSubmissionPrepMainPanel::UpdateSeqTechCtrls(), CSubPrepFieldEditor::UpdateValues(), CCountries::USAStateCleanup(), CGeneValidator::Validate(), CMiscFeatValidator::Validate(), CAssemblyGapValidator::Validate(), CImpFeatValidator::Validate(), CValidError_imp::Validate(), CValidError_imp::ValidateAffil(), CValidError_imp::ValidateBioSource(), CValidError_bioseq::ValidateCollidingGenes(), CSubSource::ValidateLatLonCountry(), CAsnvalApp::ValidateOneDirectory(), CValidError_imp::ValidateOrgName(), CValidError_imp::ValidateOrgRef(), CValidError_imp::ValidatePubArticleNoPMID(), CValidError_imp::ValidatePubGen(), CValidError_bioseq::ValidateRepr(), CValidError_bioseq::ValidateSeqId(), CValidError_imp::ValidateSeqLoc(), CValidError_imp::ValidateSubSource(), CAutoDefAvailableModifier::ValueFound(), CCleanup::WGSCleanup(), CNewCleanup_imp::x_AddEnvSamplOrMetagenomic(), CAutoDefModifierCombo::x_AddHIVModifiers(), CStrainSerotypeInfluenza::x_AddToInfluenzaNames(), CSourceRequirements::x_AddUniquenessProblems(), CFeatGapInfo::x_AdjustOrigLabel(), x_AdjustOrigLabel(), CAsnvalApp::x_AliasLogFile(), COrgGeneralPanel::x_ApplyChangesToSource(), CTaxValidationAndCleanup::x_ApplySpecificHostMap(), CAppendModToOrg::x_ApplyToBioSource(), CFixOrgModInst::x_ApplyToBioSource(), CSubmissionWizard::x_ApplyUserDescriptorToRecord(), CNewCleanup_imp::x_BondEC(), CNewCleanup_imp::x_CanRemoveGenbankBlockSource(), CValidError_bioseq::x_CheckOrigProteinAndTranscriptIds(), CFeatureItem::x_CleanQuals(), CNewCleanup_imp::x_CleanupGenbankBlock(), CGb_qual::x_CleanupRptAndReplaceSeq(), CAutoDefModifierCombo::x_CleanUpTaxName(), CValidError_bioseq::x_CompareStrings(), CTaxon1::x_ConvertOrgrefProps(), CSeq_id_Resolver__LRG::x_Create(), CSubPrep_panel::x_CreateMoleculeOptions(), CEnvironmentRegistry::x_Enumerate(), CGencollIdMapper::x_FillChromosomeIds(), CUrlArgs::x_Find(), CTblEditDlg::x_FindBadImportColumns(), CPrefixDeflinedlg::x_FindModifierBasedOnLabel(), CConvertFeatureBase::x_FindOption(), CTaxon2_data::x_FindProperty(), CTaxon2_data::x_FindPropertyConst(), CNewCleanup_imp::x_FixStructuredCommentKeywords(), CStrainSerotypeInfluenza::x_FixupOrganismNames(), CGenomeProjectItem::x_GatherInfo(), CAutoDefFeatureClause::x_GetDescription(), CAutoDef::x_GetFeatureClauseProductEnding(), CGenbankFormatter::x_GetFeatureSpanAndScriptStart(), CAutoDefFeatureClause::x_GetFeatureTypeWord(), CFeatureItem::x_GetFtableNameAlias(), CAutoDefFeatureClause::x_GetGenericInterval(), CAutoDef::x_GetHumanSTRFeatureClauses(), CRNANamePanel::x_GetMultiElementName(), CNAUtils::x_GetNAMetaData(), CAltitudePanel::x_GetNumber(), CAutoDefFeatureClause::x_GetProductName(), CAutoDefGeneClause::x_GetProductName(), CModifySeqId::x_GetRemoveOriginalIdCommand(), CRelaxedLookupDlg::x_GetSearchTerms(), CRNANamePanel::x_GetSingleElementName(), CStrainSerotypeInfluenza::x_GetStrainSerotypeConflicts(), CCDSTranslationProblems::x_GetTranslExceptProblems(), x_GetUpdatedDbTagName(), CNewCleanup_imp::x_HandleTrnaProductGBQual(), CEnvironmentRegistry::x_HasSection(), CTaxValidationAndCleanup::x_InterpretTaxonomyError(), CAutoDef::x_Is5SList(), CCDSTranslationProblems::x_IsThreeBaseNonsense(), CUser_object::x_IsUnreviewedType(), CUser_object::x_IsUnverifiedType(), CAutoDefFeatureClause_Base::x_LastIntervalChangeBeforeEnd(), CSubPrepIntroPanel::x_LaunchSubmitEditor(), CGencollIdMapper::x_MakeSpecForSeq(), CDB_ODBC_ConnParams::x_MapPairToParam(), CAutoDefFeatureClause_Base::x_MeetAltSpliceRules(), CNewCleanup_imp::x_MovedNamedValuesInStrain(), CGencollIdMapper::x_NCBI34_Guess(), CGencollIdMapper::x_NCBI34_Map_IdFix(), CAutoDefFeatureClause_Base::x_OkToConsolidate(), CNewCleanup_imp::x_OrgModBC(), CNAUtils::x_ParseNAMetaData(), CNewCleanup_imp::x_RemoveOldFeatures(), CNewCleanup_imp::x_SeqFeatCDSGBQualBC(), CNewCleanup_imp::x_SeqFeatRnaGBQualBC(), CBioseqContext::x_SetId(), CBioSourcePanel::x_SetOrganismInfo(), CLocAndGCodePanel::x_SetOrigin(), CValidError_bioseq::x_SetupCommonFlags(), CAutoDefFeatureClause::x_ShowTypewordFirst(), CNewCleanup_imp::x_SplitDbtag(), CCorrectRNAStrandDlg::x_StrandFromString(), CNewCleanup_imp::x_SubSourceBC(), x_TestList(), x_TestPair(), CMatchFeatureTableDlg::x_TokenMatch(), CValidError_bioseq::x_TranscriptIDsMatch(), CStrainSerotypeInfluenza::x_TrimmingOrganismNames(), CIdResolver::x_TryProcessLRG(), CEditObjectSeq_feat::x_UpdatemRNA(), CValidError_align::x_ValidateAlignPercentIdentity(), CCdregionValidator::x_ValidateConflict(), CSingleFeatValidator::x_ValidateGbquals(), CSingleFeatValidator::x_ValidateGeneXRef(), CSingleFeatValidator::x_ValidateNonGene(), CSingleFeatValidator::x_ValidateOldLocusTag(), CPeptideValidator::x_ValidatePeptideOnCodonBoundary(), CSingleFeatValidator::x_ValidateReplaceQual(), CValidError_desc::x_ValidateStructuredComment(), CValidError_desc::x_ValidateStructuredCommentSuffix(), CRNAValidator::x_ValidateTrnaCodons(), CSeqTableGridPanel::x_ValuesOkForNewColumn(), CVcfReader::xAssignVariantSource(), CVcfReader::xAssignVariationAlleleSet(), CVcfReader::xAssignVariationIds(), CSrcWriter::xFormatTabDelimited(), and CVcfReader::xProcessFilter().