this relieves us of some nastiness with Win32's version of GetObject(), which prevents us from using CRef<>::GetObject in lots of places More...
typedef CObjectCounterLocker CLockerTraits< C >::TLockerType typedef CObjectCounterLocker CObject::TLockerType Default locker type for CRef. More...this relieves us of some nastiness with Win32's version of GetObject(), which prevents us from using CRef<>::GetObject in lots of places
◆ NCBI_OBJECT_LOCKER_EXPORTCObjectCounterLocker – Default locker class for CRef/CConstRef templates, all other locker classes should be subclasses of CObjectCounterLocker and use its locking methods.
The CObjectCounterLocker in Debug mode allows to monitor locking/unlocking of some object class. The locking methods are non-inlined for this purpose. Monitored class is controlled by static methods MonitorObjectType() and StopMonitoring(). Currently locked objects and CRef<> pointers to them can be printed by calling static method ReportLockedObjects().
Definition at line 112 of file ncbiobj.hpp.
◆ element_type [1/3]template<class C , class Locker >
Define alias element_type.
Definition at line 620 of file ncbiobj.hpp.
◆ element_type [2/3]template<class C , class Locker >
◆ element_type [3/3]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ enable_if_derived [1/4]template<class C , class Locker >
template<class T >
Helper template to template enable methods only for derived types.
Definition at line 627 of file ncbiobj.hpp.
◆ enable_if_derived [2/4]template<class C , class Locker >
template<class T >
Helper template to template enable methods only for derived types.
Definition at line 1275 of file ncbiobj.hpp.
◆ enable_if_derived [3/4]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class T >
Helper template to template enable methods only for derived types.
Definition at line 2042 of file ncbiobj.hpp.
◆ enable_if_derived [4/4]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class T >
Helper template to template enable methods only for derived types.
Definition at line 2168 of file ncbiobj.hpp.
◆ locker_type [1/6]template<class C , class Locker >
Define alias for locking type.
Definition at line 622 of file ncbiobj.hpp.
◆ locker_type [2/6]template<class C , class Locker >
Define alias for locking type.
Definition at line 1270 of file ncbiobj.hpp.
◆ locker_type [3/6]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Definition at line 2037 of file ncbiobj.hpp.
◆ locker_type [4/6]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Definition at line 2163 of file ncbiobj.hpp.
◆ locker_type [5/6]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Define alias for locking type.
Definition at line 2662 of file ncbiobj.hpp.
◆ locker_type [6/6]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Definition at line 2810 of file ncbiobj.hpp.
◆ proxy_typetemplate<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ TCountAlias for value type of counter.
Definition at line 310 of file ncbiobj.hpp.
◆ TCounterCounter type is CAtomiCounter.
Definition at line 309 of file ncbiobj.hpp.
◆ TLockerType [1/3] ◆ TLockerType [2/3] ◆ TLockerType [3/3] ◆ TObjectType [1/7]template<class C , class Locker >
◆ TObjectType [2/7]template<class C , class Locker >
◆ TObjectType [3/7]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Definition at line 2036 of file ncbiobj.hpp.
◆ TObjectType [4/7]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Definition at line 2162 of file ncbiobj.hpp.
◆ TObjectType [5/7]Define alias for template parameter.
Definition at line 2337 of file ncbiobj.hpp.
◆ TObjectType [6/7]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ TObjectType [7/7]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Definition at line 2809 of file ncbiobj.hpp.
◆ TParent [1/3]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Definition at line 2034 of file ncbiobj.hpp.
◆ TParent [2/3]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Definition at line 2160 of file ncbiobj.hpp.
◆ TParent [3/3]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Definition at line 2807 of file ncbiobj.hpp.
◆ TPtrProxyType [1/2]Type working as proxy storage for pointer to object.
Definition at line 2552 of file ncbiobj.hpp.
◆ TPtrProxyType [2/2]template<class Interface >
Type working as proxy storage for pointer to object.
Definition at line 2587 of file ncbiobj.hpp.
◆ TRefType [1/2]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ TRefType [2/2]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Definition at line 2811 of file ncbiobj.hpp.
◆ TThisType [1/8]template<class C , class Locker >
Alias for this template type.
Definition at line 623 of file ncbiobj.hpp.
◆ TThisType [2/8]template<class C , class Locker >
◆ TThisType [3/8]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Definition at line 2038 of file ncbiobj.hpp.
◆ TThisType [4/8]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Definition at line 2164 of file ncbiobj.hpp.
◆ TThisType [5/8] ◆ TThisType [6/8]template<class Interface >
◆ TThisType [7/8]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ TThisType [8/8]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Definition at line 2812 of file ncbiobj.hpp.
◆ EAllocFillModeControl filling of newly allocated memory.
Default mode is eAllocFillNone if not changed by configuration. eAllocFillNone - do not fill at all this mode is faster and is necessary to avoid interference with memory checker programs like Valgrind. eAllocFillZero - fill new memory with zeros (old default mode) eAllocFillPattern - fill with non-zero pattern
Enumerator eAllocFillNone eAllocFillZero eAllocFillPatternDefinition at line 286 of file ncbiobj.hpp.
◆ EErrCodeError types that an application can generate.
Enumerator eRefDeleteAttempt to delete valid reference.
eDeletedAttempt to delete a deleted object.
eCorruptedObject corrupted error.
eRefOverflowReference overflow error.
eNoRefAttempt to access an object that is unreferenced.
eRefUnrefAttempt to make a referenced object an unreferenced one.
eHeapStateAttempt to make incorrect in-heap state.
Definition at line 77 of file ncbiobj.hpp.
◆ AddReference() void CObject::AddReference ( void ) const inlineAdd reference to object.
Definition at line 489 of file ncbiobj.hpp.
References CObject::CheckReferenceOverflow(), CObject::eCounterStep, CObject::m_Counter, and CObject::ObjectStateReferenced().
Referenced by CDB_Stream::CDB_Stream(), impl::CDBHandlerStack::CUserHandlerWrapper::CObjGuard::CObjGuard(), CGnomon_param_Base::C_Param::DoSelect(), CMarkov_chain_params_Base::C_E_Probabilities::DoSelect(), CFilter_Base::C_FF::C_E_FF::DoSelect(), CPlistObject_Base::DoSelect(), CGBenchServiceReply_Base::DoSelect(), CGBenchServiceRequest_Base::DoSelect(), CPluginArg_Base::C_Data::DoSelect(), CPluginReplyAction_Base::DoSelect(), CPluginValue_Base::DoSelect(), CPluginValueConstraint_Base::DoSelect(), CAffil_Base::DoSelect(), CArticleId_Base::DoSelect(), CCit_art_Base::C_From::DoSelect(), CBlast4_queries_Base::DoSelect(), CBlast4_reply_body_Base::DoSelect(), CBlast4_request_body_Base::DoSelect(), CBlast4_value_Base::DoSelect(), CResults_Base::DoSelect(), CCdd_descr_Base::DoSelect(), CCdd_id_Base::DoSelect(), CCdd_pref_node_descr_Base::DoSelect(), CFeature_evidence_Base::DoSelect(), CSeqTree_node_Base::C_Children::DoSelect(), CUpdate_comment_Base::DoSelect(), CE2Reply_Base::DoSelect(), CE2Request_Base::DoSelect(), CEntrez2_boolean_element_Base::DoSelect(), CProjectItem_Base::C_Item::DoSelect(), CViewDescriptor_Base::C_Data::DoSelect(), CDate_Base::DoSelect(), CInt_fuzz_Base::DoSelect(), CPerson_id_Base::DoSelect(), CUser_field_Base::C_Data::DoSelect(), CGBL_Reply_Base::DoSelect(), CGC_Assembly_Base::DoSelect(), CGC_GenomicPart_Base::DoSelect(), CGC_Replicon_Base::C_Sequence::DoSelect(), CGC_TypedSeqId_Base::DoSelect(), CGCClientRequest_Base::DoSelect(), CGCClientResponse_Base::DoSelect(), CID1server_back_Base::DoSelect(), CID1server_request_Base::DoSelect(), CID2_Reply_Base::C_Reply::DoSelect(), CID2_Request_Base::C_Request::DoSelect(), CID2_Request_Get_Blob_Info_Base::C_Blob_id::DoSelect(), CID2_Seq_id_Base::DoSelect(), CAction_choice_Base::DoSelect(), CConstraint_choice_Base::DoSelect(), CConvert_feature_dst_options_Base::DoSelect(), CConvert_feature_src_options_Base::DoSelect(), CCreate_TSA_ids_src_Base::DoSelect(), CFeat_qual_choice_Base::DoSelect(), CFeat_qual_legal_val_choice_Base::DoSelect(), CField_pair_type_Base::DoSelect(), CField_type_Base::DoSelect(), CFix_caps_action_Base::DoSelect(), CLocation_choice_Base::DoSelect(), CLocation_edit_type_Base::DoSelect(), CMacro_action_choice_Base::DoSelect(), CMolinfo_field_pair_Base::DoSelect(), CParse_dest_Base::DoSelect(), CParse_src_Base::DoSelect(), CReplace_func_Base::DoSelect(), CSearch_func_Base::DoSelect(), CSequence_list_choice_Base::DoSelect(), CSource_qual_val_choice_Base::DoSelect(), CTable_match_type_Base::DoSelect(), CText_transform_Base::DoSelect(), CXref_type_Base::DoSelect(), CBiomol_descr_Base::DoSelect(), CBiostruc_descr_Base::DoSelect(), CBiostruc_id_Base::DoSelect(), CBiostruc_source_Base::C_Version_of_database::DoSelect(), CResidue_graph_pntr_Base::DoSelect(), CAtomic_temperature_factors_Base::DoSelect(), CCoordinates_Base::DoSelect(), CModel_coordinate_set_Base::C_Coordinates::DoSelect(), CModel_descr_Base::DoSelect(), CSurface_coordinates_Base::C_Surface::DoSelect(), CBiostruc_feature_Base::C_Property::DoSelect(), CBiostruc_feature_Base::C_Location::DoSelect(), CBiostruc_feature_set_descr_Base::DoSelect(), CChem_graph_pntrs_Base::DoSelect(), CMove_Base::DoSelect(), CRegion_boundary_Base::DoSelect(), CResidue_pntrs_Base::DoSelect(), CBiostruc_seqs_aligns_cdd_Base::C_Seq_align_data::DoSelect(), CEntrez_general_Base::C_Data::DoSelect(), CNcbi_mime_asn1_Base::DoSelect(), CPrintForm_Base::DoSelect(), CPC_Group_Base::C_Repeat_count::DoSelect(), CPC_InfoData_Base::C_Value::DoSelect(), CPC_Source_Base::DoSelect(), CPC_StereoCenter_Base::DoSelect(), CProjdesc_Base::DoSelect(), CPub_Base::DoSelect(), CRMReply_Base::DoSelect(), CRMRequest_Base::DoSelect(), CAnnot_id_Base::DoSelect(), CAnnotdesc_Base::DoSelect(), CDelta_seq_Base::DoSelect(), CNumbering_Base::DoSelect(), CSeq_annot_Base::C_Data::DoSelect(), CSeq_data_Base::DoSelect(), CSeq_ext_Base::DoSelect(), CSeq_hist_Base::C_Deleted::DoSelect(), CSeqdesc_Base::DoSelect(), CProduct_pos_Base::DoSelect(), CSeq_align_Base::C_Segs::DoSelect(), CSeqEdit_Cmd_Base::DoSelect(), CSeqEdit_Cmd_AddAnnot_Base::C_Search_param::C_Obj::DoSelect(), CSeqEdit_Cmd_AddAnnot_Base::C_Search_param::DoSelect(), CSeqEdit_Cmd_AddAnnot_Base::C_Data::DoSelect(), CSeqEdit_Cmd_ChangeSeqAttr_Base::C_Data::DoSelect(), CSeqEdit_Cmd_ChangeSetAttr_Base::C_Data::DoSelect(), CSeqEdit_Cmd_RemoveAnnot_Base::C_Data::DoSelect(), CSeqEdit_Cmd_ReplaceAnnot_Base::C_Data::DoSelect(), CSeqEdit_Id_Base::DoSelect(), CDelta_item_Base::C_Seq::DoSelect(), CFeat_id_Base::DoSelect(), COrgName_Base::C_Name::DoSelect(), CRNA_ref_Base::C_Ext::DoSelect(), CRsite_ref_Base::DoSelect(), CSeqFeatData_Base::DoSelect(), CVariation_ref_Base::C_Data::DoSelect(), CVariation_ref_Base::C_E_Consequence::DoSelect(), CSeq_id_Base::DoSelect(), CSeq_loc_Base::DoSelect(), CSeq_graph_Base::C_Graph::DoSelect(), CSeq_entry_Base::DoSelect(), CID2S_Bioseq_Ids_Base::C_E::DoSelect(), CID2S_Chunk_Content_Base::DoSelect(), CID2S_Chunk_Data_Base::C_Id::DoSelect(), CID2S_Seq_loc_Base::DoSelect(), CSeqTable_multi_data_Base::DoSelect(), CSeqTable_single_data_Base::DoSelect(), CSeqTable_sparse_index_Base::DoSelect(), CSeqTestResults_Base::C_Source::DoSelect(), CTaxon1_req_Base::DoSelect(), CTaxon1_resp_Base::DoSelect(), CT3Reply_Base::DoSelect(), CT3Request_Base::DoSelect(), CTMgr_AssemblySpec_Base::DoSelect(), CTMgr_CreateRemoteTrackRequest_Base::C_Track_db::DoSelect(), CTMgr_DisplayTrackChoice_Base::DoSelect(), CTMgr_GenomeContext_Base::DoSelect(), CTMgr_Reply_Base::DoSelect(), CTMgr_Request_Base::DoSelect(), CVariation_Base::C_Data::DoSelect(), CVariation_Base::C_E_Consequence::DoSelect(), CSearchByRsIdReply_Base::DoSelect(), CDbsnpTooltipServiceReply_Base::DoSelect(), CAaLocation_Base::DoSelect(), CCount_Base::DoSelect(), CDelins_Base::C_Inserted_seq_info::DoSelect(), CFrameshift_Base::DoSelect(), CInsertion_Base::C_Seqinfo::DoSelect(), CNtIntLimit_Base::DoSelect(), CNtLocation_Base::DoSelect(), CProteinExtension_Base::DoSelect(), CSeqInterval_Base::DoSelect(), CSeqLocation_Base::DoSelect(), CSimpleVariant_Base::C_Type::DoSelect(), CVariant_Base::DoSelect(), CCDD_Reply_Base::C_Reply::DoSelect(), CCDD_Request_Base::C_Request::DoSelect(), CEMyNCBIResult_Base::C_UE::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_DeprecatedContExp::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Unary_functional_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Binary_arith_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Unary_arith_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_minmax_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_arith_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_logical_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Binary_logical_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Quantifier_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_reln_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Binary_reln_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Unary_veccalc_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_setlist_constructor_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_set_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Binary_set_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_set_reln_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Unary_elementary_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_stats_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_constructor_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Unary_linalg_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Binary_linalg_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Constant_set_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Constant_arith_mmlclass::DoSelect(), CApply_content_Base::C_ContExp::C_E_ContExp::DoSelect(), CApply_content_Base::C_Qualifier::C_E_Qualifier::C_DCL::DoSelect(), CApply_content_Base::C_Qualifier::C_E_Qualifier::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_DeprecatedContExp::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Unary_functional_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Binary_arith_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Unary_arith_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_minmax_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_arith_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_logical_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Binary_logical_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Quantifier_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_reln_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Binary_reln_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Unary_veccalc_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_setlist_constructor_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_set_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Binary_set_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_set_reln_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Unary_elementary_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_stats_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_constructor_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Unary_linalg_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Binary_linalg_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Constant_set_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Constant_arith_mmlclass::DoSelect(), CBind_content_Base::C_ContExp::C_E_ContExp::DoSelect(), CBind_content_Base::C_Qualifier::C_E_Qualifier::C_DCL::DoSelect(), CBind_content_Base::C_Qualifier::C_E_Qualifier::DoSelect(), CBvar_Base::C_DC::C_CS::DoSelect(), CBvar_Base::C_CD::C_CS::DoSelect(), CBvar_Base::DoSelect(), CCi_content_Base::C_E::C_PresentationExpression::C_TokenExpression::DoSelect(), CCi_content_Base::C_E::C_PresentationExpression::C_MalignExpression::DoSelect(), CCi_content_Base::C_E::C_PresentationExpression::DoSelect(), CCi_content_Base::C_E::DoSelect(), CCn_content_Base::C_E::C_PresentationExpression::C_TokenExpression::DoSelect(), CCn_content_Base::C_E::C_PresentationExpression::C_MalignExpression::DoSelect(), CCn_content_Base::C_E::C_PresentationExpression::DoSelect(), CCn_content_Base::C_E::DoSelect(), CContExp_Base::C_DeprecatedContExp::DoSelect(), CContExp_Base::C_Unary_functional_mmlclass::DoSelect(), CContExp_Base::C_Binary_arith_mmlclass::DoSelect(), CContExp_Base::C_Unary_arith_mmlclass::DoSelect(), CContExp_Base::C_Nary_minmax_mmlclass::DoSelect(), CContExp_Base::C_Nary_arith_mmlclass::DoSelect(), CContExp_Base::C_Nary_logical_mmlclass::DoSelect(), CContExp_Base::C_Binary_logical_mmlclass::DoSelect(), CContExp_Base::C_Quantifier_mmlclass::DoSelect(), CContExp_Base::C_Nary_reln_mmlclass::DoSelect(), CContExp_Base::C_Binary_reln_mmlclass::DoSelect(), CContExp_Base::C_Unary_veccalc_mmlclass::DoSelect(), CContExp_Base::C_Nary_setlist_constructor_mmlclass::DoSelect(), CContExp_Base::C_Nary_set_mmlclass::DoSelect(), CContExp_Base::C_Binary_set_mmlclass::DoSelect(), CContExp_Base::C_Nary_set_reln_mmlclass::DoSelect(), CContExp_Base::C_Unary_elementary_mmlclass::DoSelect(), CContExp_Base::C_Nary_stats_mmlclass::DoSelect(), CContExp_Base::C_Nary_constructor_mmlclass::DoSelect(), CContExp_Base::C_Unary_linalg_mmlclass::DoSelect(), CContExp_Base::C_Binary_linalg_mmlclass::DoSelect(), CContExp_Base::C_Constant_set_mmlclass::DoSelect(), CContExp_Base::C_Constant_arith_mmlclass::DoSelect(), CContExp_Base::DoSelect(), CCsymbol_content_Base::C_E::C_PresentationExpression::C_TokenExpression::DoSelect(), CCsymbol_content_Base::C_E::C_PresentationExpression::C_MalignExpression::DoSelect(), CCsymbol_content_Base::C_E::C_PresentationExpression::DoSelect(), CCsymbol_content_Base::C_E::DoSelect(), CDomainQ_Base::C_E::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_DeprecatedContExp::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Unary_functional_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Binary_arith_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Unary_arith_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_minmax_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_arith_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_logical_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Binary_logical_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Quantifier_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_reln_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Binary_reln_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Unary_veccalc_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_setlist_constructor_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_set_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Binary_set_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_set_reln_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Unary_elementary_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_stats_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_constructor_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Unary_linalg_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Binary_linalg_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Constant_set_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::C_Constant_arith_mmlclass::DoSelect(), CImpliedMrow_Base::C_E::C_ContExp::DoSelect(), CImpliedMrow_Base::C_E::C_PresentationExpression::C_TokenExpression::DoSelect(), CImpliedMrow_Base::C_E::C_PresentationExpression::C_MalignExpression::DoSelect(), CImpliedMrow_Base::C_E::C_PresentationExpression::DoSelect(), CImpliedMrow_Base::C_E::DoSelect(), CMathExpression_Base::C_ContExp::C_DeprecatedContExp::DoSelect(), CMathExpression_Base::C_ContExp::C_Unary_functional_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Binary_arith_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Unary_arith_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Nary_minmax_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Nary_arith_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Nary_logical_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Binary_logical_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Quantifier_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Nary_reln_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Binary_reln_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Unary_veccalc_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Nary_setlist_constructor_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Nary_set_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Binary_set_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Nary_set_reln_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Unary_elementary_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Nary_stats_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Nary_constructor_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Unary_linalg_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Binary_linalg_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Constant_set_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::C_Constant_arith_mmlclass::DoSelect(), CMathExpression_Base::C_ContExp::DoSelect(), CMathExpression_Base::C_PresentationExpression::C_TokenExpression::DoSelect(), CMathExpression_Base::C_PresentationExpression::C_MalignExpression::DoSelect(), CMathExpression_Base::C_PresentationExpression::DoSelect(), CMathExpression_Base::DoSelect(), CMi_Base::C_E_Mi::DoSelect(), CMn_Base::C_E_Mn::DoSelect(), CMo_Base::C_E_Mo::DoSelect(), CMs_Base::C_E_Ms::DoSelect(), CMscarries_Base::C_E_Mscarries::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_DeprecatedContExp::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Unary_functional_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Binary_arith_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Unary_arith_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_minmax_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_arith_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_logical_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Binary_logical_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Quantifier_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_reln_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Binary_reln_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Unary_veccalc_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_set_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Binary_set_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_set_reln_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Unary_elementary_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_stats_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Unary_linalg_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Binary_linalg_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Constant_set_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Constant_arith_mmlclass::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_ContExp::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::C_MalignExpression::DoSelect(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::DoSelect(), CMsrowExpression_Base::C_MathExpression::DoSelect(), CMsrowExpression_Base::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_DeprecatedContExp::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Unary_functional_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Binary_arith_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Unary_arith_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_minmax_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_arith_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_logical_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Binary_logical_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Quantifier_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_reln_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Binary_reln_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Unary_veccalc_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_set_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Binary_set_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_set_reln_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Unary_elementary_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_stats_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Unary_linalg_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Binary_linalg_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Constant_set_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Constant_arith_mmlclass::DoSelect(), CMstackExpression_Base::C_MathExpression::C_ContExp::DoSelect(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::DoSelect(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::C_MalignExpression::DoSelect(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::DoSelect(), CMstackExpression_Base::C_MathExpression::DoSelect(), CMstackExpression_Base::DoSelect(), CMtext_Base::C_E_Mtext::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_DeprecatedContExp::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Unary_functional_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Binary_arith_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Unary_arith_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_minmax_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_arith_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_logical_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Binary_logical_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Quantifier_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_reln_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Binary_reln_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Unary_veccalc_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_set_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Binary_set_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_set_reln_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Unary_elementary_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_stats_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Unary_linalg_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Binary_linalg_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Constant_set_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Constant_arith_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::C_TokenExpression::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::C_MalignExpression::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::DoSelect(), CMultiScriptExpression_Base::C_MN::C_MathExpression::DoSelect(), CMultiScriptExpression_Base::C_MN::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_DeprecatedContExp::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Unary_functional_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Binary_arith_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Unary_arith_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_minmax_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_arith_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_logical_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Binary_logical_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Quantifier_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_reln_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Binary_reln_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Unary_veccalc_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_set_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Binary_set_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_set_reln_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Unary_elementary_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_stats_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Unary_linalg_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Binary_linalg_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Constant_set_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Constant_arith_mmlclass::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::C_TokenExpression::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::C_MalignExpression::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::DoSelect(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::DoSelect(), CMultiScriptExpression_Base::C_MN_2::DoSelect(), CPiecewise_Base::C_E_Piecewise::DoSelect(), CSemantics_Base::C_AA::C_E_AA::DoSelect(), CTableRowExpression_Base::DoSelect(), CToken_content_Base::C_EMM::DoSelect(), CNone_Base::C_E_None::DoSelect(), CAuthor_Base::C_LC::DoSelect(), CNCBlobVerManager::Get(), SGridWorkerNodeImpl::GetJobProcessor(), CObjectMemoryPoolChunk::IncrementObjectCount(), CNCStat::Initialize(), CAsyncDiagHandler::InstallToDiag(), CNCBlobVerManager::ObtainReference(), impl::CDBHandlerStack::CUserHandlerWrapper::CObjGuard::operator=(), CFileHandleDiagHandler::Post(), REG_cxx2c(), CUsedTlsBases::Register(), CFileHandleDiagHandler::Reopen(), CSafeStatic_Allocator< T >::s_AddReference(), s_ShiftStats(), CSeqInterval_Base::SetAaint(), CSeqLocation_Base::SetAaloc(), CFrameshift_Base::SetAasite(), CGnomon_param_Base::C_Param::SetAcceptor(), CSeqEdit_Cmd_Base::SetAdd_annot(), CSeqEdit_Cmd_Base::SetAdd_desc(), CSeqEdit_Cmd_Base::SetAdd_descr(), CMacro_action_choice_Base::SetAdd_feature(), CMacro_action_choice_Base::SetAdd_file_descriptors(), CSeqEdit_Cmd_Base::SetAdd_id(), CPluginReplyAction_Base::SetAdd_to_MRU(), CUpdate_comment_Base::SetAddthis(), CMacro_action_choice_Base::SetAdjust_features_for_gaps(), CMacro_action_choice_Base::SetAecr(), CPC_AssaySubmit_Base::C_Assay::SetAid_source(), CPC_AssaySubmit_Base::C_Assay::SetAidver(), CAnnotdesc_Base::SetAlign(), CSeqEdit_Cmd_AddAnnot_Base::C_Search_param::C_Obj::SetAlign(), CSeqEdit_Cmd_AddAnnot_Base::C_Data::SetAlign(), CSeqEdit_Cmd_RemoveAnnot_Base::C_Data::SetAlign(), CSeqEdit_Cmd_ReplaceAnnot_Base::C_Data::SetAlign(), CBiostruc_feature_Base::C_Location::SetAlignment(), CNcbi_mime_asn1_Base::SetAlignseq(), CNcbi_mime_asn1_Base::SetAlignstruc(), CAtomic_temperature_factors_Base::SetAnisotropic(), CProjectItem_Base::C_Item::SetAnnot(), CSemantics_Base::C_AA::C_E_AA::SetAnnotation(), CSemantics_Base::C_AA::C_E_AA::SetAnnotation_xml(), CNone_Base::C_E_None::SetAnyContent(), CAction_choice_Base::SetApply(), CApply_content_Base::C_ContExp::C_E_ContExp::SetApply(), CBind_content_Base::C_ContExp::C_E_ContExp::SetApply(), CContExp_Base::SetApply(), CImpliedMrow_Base::C_E::C_ContExp::SetApply(), CMathExpression_Base::C_ContExp::SetApply(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetApply(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetApply(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetApply(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetApply(), CMacro_action_choice_Base::SetApply_molinfo_block(), CMacro_action_choice_Base::SetApply_table(), CPlistObject_Base::SetArray(), CPub_Base::SetArticle(), CGC_GenomicPart_Base::SetAssembly(), CTMgr_GenomeContext_Base::SetAssembly(), CTMgr_GenomeContext_Base::SetAssembly_and_sequence(), CGC_Assembly_Base::SetAssembly_set(), CCoordinates_Base::SetAtomic(), CChem_graph_pntrs_Base::SetAtoms(), CSeqEdit_Cmd_Base::SetAttach_annot(), CPluginReplyAction_Base::SetAttach_project(), CSeqEdit_Cmd_Base::SetAttach_seq(), CSeqEdit_Cmd_Base::SetAttach_seqentry(), CSeqEdit_Cmd_Base::SetAttach_set(), CCdd_descr_Base::SetAttribution(), CBiomol_descr_Base::SetAttribution(), CBiostruc_descr_Base::SetAttribution(), CModel_descr_Base::SetAttribution(), CBiostruc_feature_set_descr_Base::SetAttribution(), CFix_caps_action_Base::SetAuthor(), CMacro_action_choice_Base::SetAutodef(), CApply_content_Base::C_ContExp::C_E_ContExp::SetBinary_arith_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetBinary_arith_mmlclass(), CContExp_Base::SetBinary_arith_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetBinary_arith_mmlclass(), CMathExpression_Base::C_ContExp::SetBinary_arith_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetBinary_arith_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetBinary_arith_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetBinary_arith_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetBinary_arith_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetBinary_linalg_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetBinary_linalg_mmlclass(), CContExp_Base::SetBinary_linalg_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetBinary_linalg_mmlclass(), CMathExpression_Base::C_ContExp::SetBinary_linalg_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetBinary_linalg_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetBinary_linalg_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetBinary_linalg_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetBinary_linalg_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetBinary_logical_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetBinary_logical_mmlclass(), CContExp_Base::SetBinary_logical_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetBinary_logical_mmlclass(), CMathExpression_Base::C_ContExp::SetBinary_logical_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetBinary_logical_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetBinary_logical_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetBinary_logical_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetBinary_logical_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetBinary_reln_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetBinary_reln_mmlclass(), CContExp_Base::SetBinary_reln_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetBinary_reln_mmlclass(), CMathExpression_Base::C_ContExp::SetBinary_reln_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetBinary_reln_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetBinary_reln_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetBinary_reln_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetBinary_reln_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetBinary_set_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetBinary_set_mmlclass(), CContExp_Base::SetBinary_set_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetBinary_set_mmlclass(), CMathExpression_Base::C_ContExp::SetBinary_set_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetBinary_set_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetBinary_set_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetBinary_set_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetBinary_set_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetBind(), CBind_content_Base::C_ContExp::C_E_ContExp::SetBind(), CContExp_Base::SetBind(), CImpliedMrow_Base::C_E::C_ContExp::SetBind(), CMathExpression_Base::C_ContExp::SetBind(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetBind(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetBind(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetBind(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetBind(), COrgName_Base::C_Name::SetBinomial(), CBlast4_value_Base::SetBioseq(), CSeqEdit_Id_Base::SetBioseq_id(), CBlast4_queries_Base::SetBioseq_set(), CBlast4_value_Base::SetBioseq_set(), CSeqFeatData_Base::SetBiosrc(), CResidue_graph_pntr_Base::SetBiostruc(), CPC_StereoCenter_Base::SetBipyramid(), CSeqTable_multi_data_Base::SetBit_bvector(), CSeqTable_sparse_index_Base::SetBit_set_bvector(), CTMgr_Reply_Base::SetBlast_tracks(), CTMgr_Request_Base::SetBlast_tracks(), CID2_Request_Get_Blob_Info_Base::C_Blob_id::SetBlob_id(), CPrintForm_Base::SetBlock(), CSeq_loc_Base::SetBond(), CCit_art_Base::C_From::SetBook(), CPub_Base::SetBook(), CCdd_descr_Base::SetBook_ref(), CFeature_evidence_Base::SetBook_ref(), CPrintForm_Base::SetBoolean(), CSurface_coordinates_Base::C_Surface::SetBrick(), CRegion_boundary_Base::SetBrick(), CFeature_evidence_Base::SetBsannot(), CBiostruc_seqs_aligns_cdd_Base::C_Seq_align_data::SetBundle(), CSeq_graph_Base::C_Graph::SetByte(), CBiostruc_feature_Base::C_Property::SetCamera(), CApply_content_Base::C_ContExp::C_E_ContExp::SetCbytes(), CBind_content_Base::C_ContExp::C_E_ContExp::SetCbytes(), CContExp_Base::SetCbytes(), CImpliedMrow_Base::C_E::C_ContExp::SetCbytes(), CMathExpression_Base::C_ContExp::SetCbytes(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetCbytes(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetCbytes(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetCbytes(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetCbytes(), CBvar_Base::SetCD(), CBiostruc_seqs_aligns_cdd_Base::C_Seq_align_data::SetCdd(), CSeqFeatData_Base::SetCdregion(), CConvert_feature_src_options_Base::SetCds(), CField_pair_type_Base::SetCds_gene_prot(), CConstraint_choice_Base::SetCdsgeneprot_pseudo(), CConstraint_choice_Base::SetCdsgeneprot_qual(), CApply_content_Base::C_ContExp::C_E_ContExp::SetCerror(), CBind_content_Base::C_ContExp::C_E_ContExp::SetCerror(), CContExp_Base::SetCerror(), CImpliedMrow_Base::C_E::C_ContExp::SetCerror(), CMathExpression_Base::C_ContExp::SetCerror(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetCerror(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetCerror(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetCerror(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetCerror(), CSeqEdit_Cmd_Base::SetChange_seqattr(), CSeqEdit_Cmd_Base::SetChange_setattr(), CApply_content_Base::C_ContExp::C_E_ContExp::SetCi(), CBind_content_Base::C_ContExp::C_E_ContExp::SetCi(), CBvar_Base::C_DC::C_CS::SetCi(), CBvar_Base::C_CD::C_CS::SetCi(), CContExp_Base::SetCi(), CImpliedMrow_Base::C_E::C_ContExp::SetCi(), CMathExpression_Base::C_ContExp::SetCi(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetCi(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetCi(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetCi(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetCi(), CSeqFeatData_Base::SetClone(), CApply_content_Base::C_ContExp::C_E_ContExp::SetCn(), CBind_content_Base::C_ContExp::C_E_ContExp::SetCn(), CContExp_Base::SetCn(), CImpliedMrow_Base::C_E::C_ContExp::SetCn(), CMathExpression_Base::C_ContExp::SetCn(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetCn(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetCn(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetCn(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetCn(), CSeqEdit_Cmd_ChangeSetAttr_Base::C_Data::SetColl(), CAuthor_Base::C_LC::SetCollectiveName(), CBiostruc_feature_Base::C_Property::SetColor(), CSeqTable_multi_data_Base::SetCommon_bytes(), CSeqTable_multi_data_Base::SetCommon_string(), CMolinfo_field_pair_Base::SetCompletedness(), CApply_content_Base::C_Qualifier::C_E_Qualifier::C_DCL::SetCondition(), CBind_content_Base::C_Qualifier::C_E_Qualifier::C_DCL::SetCondition(), CDomainQ_Base::C_E::SetCondition(), CSurface_coordinates_Base::C_Surface::SetCone(), CRegion_boundary_Base::SetCone(), CApply_content_Base::C_ContExp::C_E_ContExp::SetConstant_arith_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetConstant_arith_mmlclass(), CContExp_Base::SetConstant_arith_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetConstant_arith_mmlclass(), CMathExpression_Base::C_ContExp::SetConstant_arith_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetConstant_arith_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetConstant_arith_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetConstant_arith_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetConstant_arith_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetConstant_set_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetConstant_set_mmlclass(), CContExp_Base::SetConstant_set_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetConstant_set_mmlclass(), CMathExpression_Base::C_ContExp::SetConstant_set_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetConstant_set_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetConstant_set_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetConstant_set_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetConstant_set_mmlclass(), CNumbering_Base::SetCont(), CImpliedMrow_Base::C_E::SetContExp(), CMathExpression_Base::SetContExp(), CMsrowExpression_Base::C_MathExpression::SetContExp(), CMstackExpression_Base::C_MathExpression::SetContExp(), CMultiScriptExpression_Base::C_MN::C_MathExpression::SetContExp(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::SetContExp(), CSimpleVariant_Base::C_Type::SetConv(), CAction_choice_Base::SetConvert(), CMacro_action_choice_Base::SetConvert_feature(), CAction_choice_Base::SetCopy(), CCdd_descr_Base::SetCreate_date(), CCdd_pref_node_descr_Base::SetCreate_date(), CAnnotdesc_Base::SetCreate_date(), CSeqdesc_Base::SetCreate_date(), CTMgr_Reply_Base::SetCreate_remote_tracks(), CTMgr_Request_Base::SetCreate_remote_tracks(), CTMgr_Reply_Base::SetCreate_trackset(), CTMgr_Request_Base::SetCreate_trackset(), CMacro_action_choice_Base::SetCreate_tsa_ids(), CTMgr_Reply_Base::SetCreate_user_tracks(), CTMgr_Request_Base::SetCreate_user_tracks(), CApply_content_Base::C_ContExp::C_E_ContExp::SetCs(), CBind_content_Base::C_ContExp::C_E_ContExp::SetCs(), CContExp_Base::SetCs(), CImpliedMrow_Base::C_E::C_ContExp::SetCs(), CMathExpression_Base::C_ContExp::SetCs(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetCs(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetCs(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetCs(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetCs(), CApply_content_Base::C_ContExp::C_E_ContExp::SetCsymbol(), CBind_content_Base::C_ContExp::C_E_ContExp::SetCsymbol(), CContExp_Base::SetCsymbol(), CImpliedMrow_Base::C_E::C_ContExp::SetCsymbol(), CMathExpression_Base::C_ContExp::SetCsymbol(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetCsymbol(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetCsymbol(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetCsymbol(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetCsymbol(), CProteinExtension_Base::SetCterm_ext(), CBlast4_value_Base::SetCutoff(), CSurface_coordinates_Base::C_Surface::SetCylinder(), CRegion_boundary_Base::SetCylinder(), CGBL_Reply_Base::SetData(), CT3Reply_Base::SetData(), CPluginValue_Base::SetDataHandle(), CPC_InfoData_Base::C_Value::SetDate(), CProjdesc_Base::SetDate(), CSeq_hist_Base::C_Deleted::SetDate(), CSeqEdit_Cmd_ChangeSetAttr_Base::C_Data::SetDate(), CPC_Source_Base::SetDb(), CRsite_ref_Base::SetDb(), CField_pair_type_Base::SetDblink(), CPerson_id_Base::SetDbtag(), CSeqdesc_Base::SetDbxref(), CBvar_Base::SetDC(), CApply_content_Base::C_Qualifier::C_E_Qualifier::SetDCL(), CBind_content_Base::C_Qualifier::C_E_Qualifier::SetDCL(), CSeq_id_Base::SetDdbj(), CApply_content_Base::C_ContExp::C_E_ContExp::C_DeprecatedContExp::SetDeclare(), CBind_content_Base::C_ContExp::C_E_ContExp::C_DeprecatedContExp::SetDeclare(), CContExp_Base::C_DeprecatedContExp::SetDeclare(), CImpliedMrow_Base::C_E::C_ContExp::C_DeprecatedContExp::SetDeclare(), CMathExpression_Base::C_ContExp::C_DeprecatedContExp::SetDeclare(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetDeclare(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetDeclare(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetDeclare(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetDeclare(), CCreate_TSA_ids_src_Base::SetDefline(), CApply_content_Base::C_Qualifier::C_E_Qualifier::SetDegree(), CBind_content_Base::C_Qualifier::C_E_Qualifier::SetDegree(), CSimpleVariant_Base::C_Type::SetDel(), CSimpleVariant_Base::C_Type::SetDelins(), CSeq_ext_Base::SetDelta(), CSeq_align_Base::C_Segs::SetDenseg(), CCoordinates_Base::SetDensity(), CApply_content_Base::C_ContExp::C_E_ContExp::SetDeprecatedContExp(), CBind_content_Base::C_ContExp::C_E_ContExp::SetDeprecatedContExp(), CContExp_Base::SetDeprecatedContExp(), CImpliedMrow_Base::C_E::C_ContExp::SetDeprecatedContExp(), CMathExpression_Base::C_ContExp::SetDeprecatedContExp(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetDeprecatedContExp(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetDeprecatedContExp(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetDeprecatedContExp(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetDeprecatedContExp(), CPC_AssaySubmit_Base::C_Assay::SetDescr(), CSeqEdit_Cmd_AddAnnot_Base::C_Search_param::SetDescr(), CPlistObject_Base::SetDict(), CApply_content_Base::C_ContExp::C_E_ContExp::SetDifferential_Operator_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetDifferential_Operator_mmlclass(), CContExp_Base::SetDifferential_Operator_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetDifferential_Operator_mmlclass(), CMathExpression_Base::C_ContExp::SetDifferential_Operator_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetDifferential_Operator_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetDifferential_Operator_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetDifferential_Operator_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetDifferential_Operator_mmlclass(), CSeq_align_Base::C_Segs::SetDisc(), CTMgr_Reply_Base::SetDisplay_tracks(), CTMgr_Request_Base::SetDisplay_tracks(), CApply_content_Base::C_Qualifier::C_E_Qualifier::C_DCL::SetDomainofapplication(), CBind_content_Base::C_Qualifier::C_E_Qualifier::C_DCL::SetDomainofapplication(), CDomainQ_Base::C_E::SetDomainofapplication(), CGnomon_param_Base::C_Param::SetDonor(), CSimpleVariant_Base::C_Type::SetDup(), CAction_choice_Base::SetEdit(), CText_transform_Base::SetEdit(), CMacro_action_choice_Base::SetEdit_location(), CSeqdesc_Base::SetEmbl(), CSeq_id_Base::SetEmbl(), CSeq_loc_Base::SetEmpty(), CNcbi_mime_asn1_Base::SetEntrez(), CProjectItem_Base::C_Item::SetEntry(), CPrintForm_Base::SetEnum(), CNumbering_Base::SetEnum(), CPub_Base::SetEquiv(), CSeq_loc_Base::SetEquiv(), CTaxon1_resp_Base::SetError(), CT3Reply_Base::SetError(), CSearchByRsIdReply_Base::SetError(), CDbsnpTooltipServiceReply_Base::SetError(), CE2Reply_Base::SetEval_boolean(), CE2Request_Base::SetEval_boolean(), CGnomon_param_Base::C_Param::SetExon(), CResidue_pntrs_Base::SetExplicit(), CSeqEdit_Cmd_ChangeSeqAttr_Base::C_Data::SetExt(), CLocation_edit_type_Base::SetExtend_3_to_feat(), CLocation_edit_type_Base::SetExtend_5_to_feat(), CGC_TypedSeqId_Base::SetExternal(), CSeqEdit_Cmd_AddAnnot_Base::C_Search_param::C_Obj::SetFeat(), CSeqEdit_Cmd_AddAnnot_Base::C_Data::SetFeat(), CSeqEdit_Cmd_RemoveAnnot_Base::C_Data::SetFeat(), CSeqEdit_Cmd_ReplaceAnnot_Base::C_Data::SetFeat(), CSeq_loc_Base::SetFeat(), CParse_dest_Base::SetFeatqual(), CField_pair_type_Base::SetFeature_field(), CField_type_Base::SetFeature_field(), CGBenchServiceRequest_Base::SetFeedback(), CConstraint_choice_Base::SetField(), CConstraint_choice_Base::SetField_missing(), CFilter_Base::C_FF::C_E_FF::SetFile(), CFilter_Base::C_FF::C_E_FF::SetFilter(), CBlast4_reply_body_Base::SetFinish_params(), CBlast4_request_body_Base::SetFinish_params(), CMacro_action_choice_Base::SetFix_author(), CMacro_action_choice_Base::SetFix_caps(), CMacro_action_choice_Base::SetFix_format(), CMacro_action_choice_Base::SetFix_pub_caps(), CMacro_action_choice_Base::SetFix_sets(), CApply_content_Base::C_ContExp::C_E_ContExp::C_DeprecatedContExp::SetFn(), CBind_content_Base::C_ContExp::C_E_ContExp::C_DeprecatedContExp::SetFn(), CContExp_Base::C_DeprecatedContExp::SetFn(), CImpliedMrow_Base::C_E::C_ContExp::C_DeprecatedContExp::SetFn(), CMathExpression_Base::C_ContExp::C_DeprecatedContExp::SetFn(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetFn(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetFn(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetFn(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetFn(), CSeqTree_node_Base::C_Children::SetFootprint(), CVariation_ref_Base::C_E_Consequence::SetFrameshift(), CSimpleVariant_Base::C_Type::SetFrameshift(), CPC_ResultType_Base::C_Constraints::SetFrange(), CSeqEdit_Cmd_ChangeSeqAttr_Base::C_Data::SetFuzz(), CSeq_data_Base::SetGap(), CPub_Base::SetGen(), CRNA_ref_Base::C_Ext::SetGen(), CGC_TypedSeqId_Base::SetGenbank(), CSeqdesc_Base::SetGenbank(), CSeq_id_Base::SetGenbank(), CXref_type_Base::SetGene(), CSeqFeatData_Base::SetGene(), CNcbi_mime_asn1_Base::SetGeneral(), CAnnot_id_Base::SetGeneral(), CFeat_id_Base::SetGeneral(), CSeq_id_Base::SetGeneral(), CParse_src_Base::SetGeneral_id(), CGBenchServiceReply_Base::SetGeneric(), CGBenchServiceRequest_Base::SetGeneric(), CEntrez_general_Base::C_Data::SetGenome(), CGCClientRequest_Base::SetGet_assembly_blob(), CGCClientRequest_Base::SetGet_assembly_by_sequence(), CGCClientResponse_Base::SetGet_assembly_by_sequence(), CID2_Reply_Base::C_Reply::SetGet_blob(), CCDD_Reply_Base::C_Reply::SetGet_blob(), CCDD_Request_Base::C_Request::SetGet_blob(), CCDD_Reply_Base::C_Reply::SetGet_blob_by_seq_id(), CCDD_Request_Base::C_Request::SetGet_blob_by_seq_id(), CID2_Reply_Base::C_Reply::SetGet_blob_id(), CID2_Request_Base::C_Request::SetGet_blob_id(), CCDD_Reply_Base::C_Reply::SetGet_blob_id(), CCDD_Request_Base::C_Request::SetGet_blob_id(), CID2_Request_Base::C_Request::SetGet_blob_info(), CID2_Reply_Base::C_Reply::SetGet_blob_seq_ids(), CGCClientRequest_Base::SetGet_chrtype_valid(), CID2_Reply_Base::C_Reply::SetGet_chunk(), CID2_Request_Base::C_Request::SetGet_chunks(), CBlast4_reply_body_Base::SetGet_databases(), CBlast4_reply_body_Base::SetGet_databases_ex(), CBlast4_request_body_Base::SetGet_databases_ex(), CE2Reply_Base::SetGet_docsum(), CE2Request_Base::SetGet_docsum(), CGCClientRequest_Base::SetGet_equivalent_assemblies(), CGCClientResponse_Base::SetGet_equivalent_assemblies(), CE2Reply_Base::SetGet_info(), CE2Reply_Base::SetGet_link_counts(), CE2Request_Base::SetGet_link_counts(), CE2Reply_Base::SetGet_linked(), CE2Request_Base::SetGet_linked(), CE2Reply_Base::SetGet_links(), CE2Request_Base::SetGet_links(), CBlast4_reply_body_Base::SetGet_matrices(), CID2_Reply_Base::C_Reply::SetGet_package(), CID2_Request_Base::C_Request::SetGet_packages(), CBlast4_reply_body_Base::SetGet_parameters(), CBlast4_reply_body_Base::SetGet_paramsets(), CBlast4_reply_body_Base::SetGet_programs(), CBlast4_reply_body_Base::SetGet_protocol_info(), CBlast4_request_body_Base::SetGet_protocol_info(), CBlast4_reply_body_Base::SetGet_queries(), CBlast4_reply_body_Base::SetGet_request_info(), CBlast4_request_body_Base::SetGet_request_info(), CBlast4_reply_body_Base::SetGet_search_info(), CBlast4_request_body_Base::SetGet_search_info(), CBlast4_reply_body_Base::SetGet_search_results(), CBlast4_request_body_Base::SetGet_search_results(), CID2_Reply_Base::C_Reply::SetGet_seq_id(), CID2_Request_Base::C_Request::SetGet_seq_id(), CBlast4_reply_body_Base::SetGet_sequence_parts(), CBlast4_request_body_Base::SetGet_sequence_parts(), CBlast4_reply_body_Base::SetGet_sequences(), CBlast4_request_body_Base::SetGet_sequences(), CID2_Reply_Base::C_Reply::SetGet_split_info(), CE2Reply_Base::SetGet_term_hierarchy(), CE2Request_Base::SetGet_term_hierarchy(), CE2Reply_Base::SetGet_term_list(), CE2Request_Base::SetGet_term_list(), CE2Request_Base::SetGet_term_pos(), CBlast4_reply_body_Base::SetGet_windowmasked_taxids(), CID1server_request_Base::SetGetblobinfo(), CTaxon1_resp_Base::SetGetbyid(), CID1server_request_Base::SetGetgi(), CTaxon1_req_Base::SetGetidbyorg(), CTaxon1_req_Base::SetGetorgmod(), CTaxon1_req_Base::SetGetorgprop(), CID1server_request_Base::SetGetsefromgi(), CID1server_request_Base::SetGetsewithinfo(), CID2S_Seq_loc_Base::SetGi_interval(), CID2S_Seq_loc_Base::SetGi_ints(), CID2S_Bioseq_Ids_Base::C_E::SetGi_range(), CCdd_id_Base::SetGid(), CFeat_id_Base::SetGiim(), CSeq_id_Base::SetGiim(), CID1server_back_Base::SetGotblobinfo(), CID1server_back_Base::SetGotdeadseqentry(), CID1server_back_Base::SetGotseqentry(), CID1server_back_Base::SetGotsewithinfo(), CSeq_id_Base::SetGpipe(), CSeqEdit_Cmd_AddAnnot_Base::C_Search_param::C_Obj::SetGraph(), CSeqEdit_Cmd_AddAnnot_Base::C_Data::SetGraph(), CSeqEdit_Cmd_RemoveAnnot_Base::C_Data::SetGraph(), CSeqEdit_Cmd_ReplaceAnnot_Base::C_Data::SetGraph(), CSeqEdit_Cmd_ChangeSeqAttr_Base::C_Data::SetHist(), CBiostruc_descr_Base::SetHistory(), CTMgr_CreateRemoteTrackRequest_Base::C_Track_db::SetHub(), CProjectItem_Base::C_Item::SetHuge_file(), COrgName_Base::C_Name::SetHybrid(), CProjectItem_Base::C_Item::SetId(), CSeqEdit_Cmd_ChangeSetAttr_Base::C_Data::SetId(), CSeqTable_single_data_Base::SetId(), CEntrez2_boolean_element_Base::SetIds(), CFeat_qual_choice_Base::SetIllegal_qual(), CSeqFeatData_Base::SetImp(), CBiostruc_feature_Base::C_Location::SetIndirect(), CPC_Source_Base::SetIndividual(), CGBenchServiceReply_Base::SetInit(), CGBenchServiceRequest_Base::SetInit(), CSimpleVariant_Base::C_Type::SetIns(), CSeqEdit_Cmd_ChangeSeqAttr_Base::C_Data::SetInst(), CVariation_ref_Base::C_Data::SetInstance(), CVariation_Base::C_Data::SetInstance(), CSeq_loc_Base::SetInt(), CSeq_graph_Base::C_Graph::SetInt(), CAaLocation_Base::SetInt(), CNtLocation_Base::SetInt(), CSeqTable_multi_data_Base::SetInt_delta(), CApply_content_Base::C_ContExp::C_E_ContExp::SetInt_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetInt_mmlclass(), CContExp_Base::SetInt_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetInt_mmlclass(), CMathExpression_Base::C_ContExp::SetInt_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetInt_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetInt_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetInt_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetInt_mmlclass(), CSeqTable_multi_data_Base::SetInt_scaled(), CBiostruc_feature_Base::C_Location::SetInteraction(), CGnomon_param_Base::C_Param::SetIntergenic(), CLocation_choice_Base::SetInterval(), CSeqTable_single_data_Base::SetInterval(), CApply_content_Base::C_ContExp::C_E_ContExp::SetInterval_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetInterval_mmlclass(), CContExp_Base::SetInterval_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetInterval_mmlclass(), CMathExpression_Base::C_ContExp::SetInterval_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetInterval_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetInterval_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetInterval_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetInterval_mmlclass(), CGnomon_param_Base::C_Param::SetIntron(), CSimpleVariant_Base::C_Type::SetInv(), CPC_ResultType_Base::C_Constraints::SetIrange(), CAtomic_temperature_factors_Base::SetIsotropic(), CViewDescriptor_Base::C_Data::SetItem(), CT3Request_Base::SetJoin(), CCit_art_Base::C_From::SetJournal(), CPub_Base::SetJournal(), CApply_content_Base::C_ContExp::C_E_ContExp::SetLambda_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetLambda_mmlclass(), CContExp_Base::SetLambda_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetLambda_mmlclass(), CMathExpression_Base::C_ContExp::SetLambda_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetLambda_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetLambda_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetLambda_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetLambda_mmlclass(), CAuthor_Base::C_LC::SetLFIS(), CApply_content_Base::C_ContExp::C_E_ContExp::SetLimit_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetLimit_mmlclass(), CContExp_Base::SetLimit_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetLimit_mmlclass(), CMathExpression_Base::C_ContExp::SetLimit_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetLimit_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetLimit_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetLimit_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetLimit_mmlclass(), CViewDescriptor_Base::C_Data::SetLink(), CSequence_list_choice_Base::SetList(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_setlist_constructor_mmlclass::SetList(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_setlist_constructor_mmlclass::SetList(), CContExp_Base::C_Nary_setlist_constructor_mmlclass::SetList(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetList(), CMathExpression_Base::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetList(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetList(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetList(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetList(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetList(), CModel_coordinate_set_Base::C_Coordinates::SetLiteral(), CDelta_seq_Base::SetLiteral(), CDelta_item_Base::C_Seq::SetLiteral(), CDelta_seq_Base::SetLoc(), CDelta_item_Base::C_Seq::SetLoc(), CSeqTable_single_data_Base::SetLoc(), CAnnot_id_Base::SetLocal(), CFeat_id_Base::SetLocal(), CSeq_id_Base::SetLocal(), CBiostruc_id_Base::SetLocal_id(), CConstraint_choice_Base::SetLocation(), CApply_content_Base::C_Qualifier::C_E_Qualifier::SetLogbase(), CBind_content_Base::C_Qualifier::C_E_Qualifier::SetLogbase(), CTaxon1_req_Base::SetLookup(), CTaxon1_resp_Base::SetLookup(), CVariation_ref_Base::C_E_Consequence::SetLoss_of_heterozygosity(), CVariation_Base::C_E_Consequence::SetLoss_of_heterozygosity(), CApply_content_Base::C_Qualifier::C_E_Qualifier::C_DCL::SetLU(), CBind_content_Base::C_Qualifier::C_E_Qualifier::C_DCL::SetLU(), CDomainQ_Base::C_E::SetLU(), CCi_content_Base::C_E::C_PresentationExpression::SetMaction(), CCn_content_Base::C_E::C_PresentationExpression::SetMaction(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMaction(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMaction(), CMathExpression_Base::C_PresentationExpression::SetMaction(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMaction(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMaction(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMaction(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMaction(), CMacro_action_choice_Base::SetMake_gene_xrefs(), CCi_content_Base::C_E::C_PresentationExpression::SetMalignExpression(), CCn_content_Base::C_E::C_PresentationExpression::SetMalignExpression(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMalignExpression(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMalignExpression(), CMathExpression_Base::C_PresentationExpression::SetMalignExpression(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMalignExpression(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMalignExpression(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMalignExpression(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMalignExpression(), CPub_Base::SetMan(), CSeq_ext_Base::SetMap(), CSeqdesc_Base::SetMaploc(), CMsrowExpression_Base::SetMathExpression(), CMstackExpression_Base::SetMathExpression(), CMultiScriptExpression_Base::C_MN::SetMathExpression(), CMultiScriptExpression_Base::C_MN_2::SetMathExpression(), CBlast4_value_Base::SetMatrix(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_constructor_mmlclass::SetMatrix(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_constructor_mmlclass::SetMatrix(), CContExp_Base::C_Nary_constructor_mmlclass::SetMatrix(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_constructor_mmlclass::SetMatrix(), CMathExpression_Base::C_ContExp::C_Nary_constructor_mmlclass::SetMatrix(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetMatrix(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetMatrix(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetMatrix(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetMatrix(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_constructor_mmlclass::SetMatrixrow(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_constructor_mmlclass::SetMatrixrow(), CContExp_Base::C_Nary_constructor_mmlclass::SetMatrixrow(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_constructor_mmlclass::SetMatrixrow(), CMathExpression_Base::C_ContExp::C_Nary_constructor_mmlclass::SetMatrixrow(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetMatrixrow(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetMatrixrow(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetMatrixrow(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetMatrixrow(), CPub_Base::SetMedline(), CCi_content_Base::C_E::C_PresentationExpression::SetMenclose(), CCn_content_Base::C_E::C_PresentationExpression::SetMenclose(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMenclose(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMenclose(), CMathExpression_Base::C_PresentationExpression::SetMenclose(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMenclose(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMenclose(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMenclose(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMenclose(), CCi_content_Base::C_E::C_PresentationExpression::SetMerror(), CCn_content_Base::C_E::C_PresentationExpression::SetMerror(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMerror(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMerror(), CMathExpression_Base::C_PresentationExpression::SetMerror(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMerror(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMerror(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMerror(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMerror(), CCi_content_Base::C_E::C_PresentationExpression::SetMfenced(), CCn_content_Base::C_E::C_PresentationExpression::SetMfenced(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMfenced(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMfenced(), CMathExpression_Base::C_PresentationExpression::SetMfenced(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMfenced(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMfenced(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMfenced(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMfenced(), CCi_content_Base::C_E::C_PresentationExpression::SetMfrac(), CCn_content_Base::C_E::C_PresentationExpression::SetMfrac(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMfrac(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMfrac(), CMathExpression_Base::C_PresentationExpression::SetMfrac(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMfrac(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMfrac(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMfrac(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMfrac(), CCi_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMi(), CCn_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMi(), CCsymbol_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMi(), CImpliedMrow_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMi(), CMathExpression_Base::C_PresentationExpression::C_TokenExpression::SetMi(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMi(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMi(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMi(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMi(), CSeq_loc_Base::SetMix(), CEntrez_general_Base::C_Data::SetMl(), CTableRowExpression_Base::SetMlabeledtr(), CCi_content_Base::C_E::C_PresentationExpression::SetMlongdiv(), CCn_content_Base::C_E::C_PresentationExpression::SetMlongdiv(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMlongdiv(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMlongdiv(), CMathExpression_Base::C_PresentationExpression::SetMlongdiv(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMlongdiv(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMlongdiv(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMlongdiv(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMlongdiv(), CPC_Source_Base::SetMmdb(), CCi_content_Base::C_E::C_PresentationExpression::SetMmultiscripts(), CCn_content_Base::C_E::C_PresentationExpression::SetMmultiscripts(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMmultiscripts(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMmultiscripts(), CMathExpression_Base::C_PresentationExpression::SetMmultiscripts(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMmultiscripts(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMmultiscripts(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMmultiscripts(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMmultiscripts(), CCi_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMn(), CCn_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMn(), CCsymbol_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMn(), CImpliedMrow_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMn(), CMathExpression_Base::C_PresentationExpression::C_TokenExpression::SetMn(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMn(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMn(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMn(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMn(), CCi_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMo(), CCn_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMo(), CCsymbol_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMo(), CImpliedMrow_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMo(), CMathExpression_Base::C_PresentationExpression::C_TokenExpression::SetMo(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMo(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMo(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMo(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMo(), CSeqdesc_Base::SetModelev(), CGC_GenomicPart_Base::SetMol(), CMolinfo_field_pair_Base::SetMol_class(), CMolinfo_field_pair_Base::SetMolecule(), CChem_graph_pntrs_Base::SetMolecules(), CConstraint_choice_Base::SetMolinfo(), CSeqdesc_Base::SetMolinfo(), CField_pair_type_Base::SetMolinfo_field(), CField_type_Base::SetMolinfo_field(), CApply_content_Base::C_Qualifier::C_E_Qualifier::SetMomentabout(), CBind_content_Base::C_Qualifier::C_E_Qualifier::SetMomentabout(), CCi_content_Base::C_E::C_PresentationExpression::SetMover(), CCn_content_Base::C_E::C_PresentationExpression::SetMover(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMover(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMover(), CMathExpression_Base::C_PresentationExpression::SetMover(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMover(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMover(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMover(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMover(), CCi_content_Base::C_E::C_PresentationExpression::SetMpadded(), CCn_content_Base::C_E::C_PresentationExpression::SetMpadded(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMpadded(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMpadded(), CMathExpression_Base::C_PresentationExpression::SetMpadded(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMpadded(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMpadded(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMpadded(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMpadded(), CCi_content_Base::C_E::C_PresentationExpression::SetMphantom(), CCn_content_Base::C_E::C_PresentationExpression::SetMphantom(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMphantom(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMphantom(), CMathExpression_Base::C_PresentationExpression::SetMphantom(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMphantom(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMphantom(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMphantom(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMphantom(), CCi_content_Base::C_E::C_PresentationExpression::SetMroot(), CCn_content_Base::C_E::C_PresentationExpression::SetMroot(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMroot(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMroot(), CMathExpression_Base::C_PresentationExpression::SetMroot(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMroot(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMroot(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMroot(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMroot(), CCi_content_Base::C_E::C_PresentationExpression::SetMrow(), CCn_content_Base::C_E::C_PresentationExpression::SetMrow(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMrow(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMrow(), CMathExpression_Base::C_PresentationExpression::SetMrow(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMrow(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMrow(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMrow(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMrow(), CCi_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMs(), CCn_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMs(), CCsymbol_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMs(), CImpliedMrow_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMs(), CMathExpression_Base::C_PresentationExpression::C_TokenExpression::SetMs(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMs(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMs(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMs(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMs(), CMstackExpression_Base::SetMscarries(), CMscarries_Base::C_E_Mscarries::SetMscarry(), CMstackExpression_Base::SetMsgroup(), CCi_content_Base::C_E::C_PresentationExpression::SetMsqrt(), CCn_content_Base::C_E::C_PresentationExpression::SetMsqrt(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMsqrt(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMsqrt(), CMathExpression_Base::C_PresentationExpression::SetMsqrt(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMsqrt(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMsqrt(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMsqrt(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMsqrt(), CMstackExpression_Base::SetMsrow(), CMscarries_Base::C_E_Mscarries::SetMsrowExpression(), CCi_content_Base::C_E::C_PresentationExpression::SetMstack(), CCn_content_Base::C_E::C_PresentationExpression::SetMstack(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMstack(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMstack(), CMathExpression_Base::C_PresentationExpression::SetMstack(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMstack(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMstack(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMstack(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMstack(), CCi_content_Base::C_E::C_PresentationExpression::SetMstyle(), CCn_content_Base::C_E::C_PresentationExpression::SetMstyle(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMstyle(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMstyle(), CMathExpression_Base::C_PresentationExpression::SetMstyle(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMstyle(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMstyle(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMstyle(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMstyle(), CCi_content_Base::C_E::C_PresentationExpression::SetMsub(), CCn_content_Base::C_E::C_PresentationExpression::SetMsub(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMsub(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMsub(), CMathExpression_Base::C_PresentationExpression::SetMsub(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMsub(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMsub(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMsub(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMsub(), CCi_content_Base::C_E::C_PresentationExpression::SetMsubsup(), CCn_content_Base::C_E::C_PresentationExpression::SetMsubsup(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMsubsup(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMsubsup(), CMathExpression_Base::C_PresentationExpression::SetMsubsup(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMsubsup(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMsubsup(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMsubsup(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMsubsup(), CCi_content_Base::C_E::C_PresentationExpression::SetMsup(), CCn_content_Base::C_E::C_PresentationExpression::SetMsup(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMsup(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMsup(), CMathExpression_Base::C_PresentationExpression::SetMsup(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMsup(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMsup(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMsup(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMsup(), CCi_content_Base::C_E::C_PresentationExpression::SetMtable(), CCn_content_Base::C_E::C_PresentationExpression::SetMtable(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMtable(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMtable(), CMathExpression_Base::C_PresentationExpression::SetMtable(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMtable(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMtable(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMtable(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMtable(), CCi_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMtext(), CCn_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMtext(), CCsymbol_content_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMtext(), CImpliedMrow_Base::C_E::C_PresentationExpression::C_TokenExpression::SetMtext(), CMathExpression_Base::C_PresentationExpression::C_TokenExpression::SetMtext(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMtext(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMtext(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMtext(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::C_TokenExpression::SetMtext(), CTableRowExpression_Base::SetMtr(), CCi_content_Base::C_E::C_PresentationExpression::SetMunder(), CCn_content_Base::C_E::C_PresentationExpression::SetMunder(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMunder(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMunder(), CMathExpression_Base::C_PresentationExpression::SetMunder(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMunder(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMunder(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMunder(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMunder(), CCi_content_Base::C_E::C_PresentationExpression::SetMunderover(), CCn_content_Base::C_E::C_PresentationExpression::SetMunderover(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetMunderover(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetMunderover(), CMathExpression_Base::C_PresentationExpression::SetMunderover(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetMunderover(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetMunderover(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetMunderover(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetMunderover(), CSimpleVariant_Base::C_Type::SetNa_identity(), CSimpleVariant_Base::C_Type::SetNa_sub(), CPerson_id_Base::SetName(), CTMgr_AssemblySpec_Base::SetName(), CSeq_id_Base::SetNamed_annot_track(), COrgName_Base::C_Name::SetNamedhybrid(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_arith_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_arith_mmlclass(), CContExp_Base::SetNary_arith_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_arith_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_arith_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_arith_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_arith_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_arith_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_arith_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_constructor_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_constructor_mmlclass(), CContExp_Base::SetNary_constructor_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_constructor_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_constructor_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_constructor_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_constructor_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_constructor_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_constructor_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_functional_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_functional_mmlclass(), CContExp_Base::SetNary_functional_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_functional_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_functional_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_functional_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_functional_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_functional_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_functional_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_linalg_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_linalg_mmlclass(), CContExp_Base::SetNary_linalg_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_linalg_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_linalg_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_linalg_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_linalg_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_linalg_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_linalg_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_logical_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_logical_mmlclass(), CContExp_Base::SetNary_logical_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_logical_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_logical_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_logical_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_logical_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_logical_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_logical_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_minmax_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_minmax_mmlclass(), CContExp_Base::SetNary_minmax_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_minmax_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_minmax_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_minmax_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_minmax_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_minmax_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_minmax_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_reln_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_reln_mmlclass(), CContExp_Base::SetNary_reln_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_reln_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_reln_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_reln_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_reln_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_reln_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_reln_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_set_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_set_mmlclass(), CContExp_Base::SetNary_set_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_set_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_set_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_set_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_set_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_set_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_set_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_set_reln_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_set_reln_mmlclass(), CContExp_Base::SetNary_set_reln_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_set_reln_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_set_reln_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_set_reln_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_set_reln_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_set_reln_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_set_reln_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_setlist_constructor_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_setlist_constructor_mmlclass(), CContExp_Base::SetNary_setlist_constructor_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_setlist_constructor_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_setlist_constructor_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_setlist_constructor_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_setlist_constructor_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_setlist_constructor_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_setlist_constructor_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetNary_stats_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetNary_stats_mmlclass(), CContExp_Base::SetNary_stats_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetNary_stats_mmlclass(), CMathExpression_Base::C_ContExp::SetNary_stats_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetNary_stats_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetNary_stats_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetNary_stats_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetNary_stats_mmlclass(), CGnomon_param_Base::C_Param::SetNon_coding_region(), CProteinExtension_Base::SetNterm_ext(), CSeqInterval_Base::SetNtint(), CSeqLocation_Base::SetNtloc(), CEntrez_general_Base::C_Data::SetNuc(), CSeqdesc_Base::SetNum(), CSeqFeatData_Base::SetNum(), CSeqEdit_Cmd_AddAnnot_Base::C_Search_param::SetObj(), CPluginValue_Base::SetObject(), CUser_field_Base::C_Data::SetObject(), CProjectItem_Base::C_Item::SetObsolete_plugin(), CPC_StereoCenter_Base::SetOctahedral(), CCdd_descr_Base::SetOld_root(), CParse_dest_Base::SetOrg(), CParse_src_Base::SetOrg(), CSeqdesc_Base::SetOrg(), CSeqFeatData_Base::SetOrg(), CT3Request_Base::SetOrg(), CBiomol_descr_Base::SetOrganism(), CArticleId_Base::SetOther(), CProjectItem_Base::C_Item::SetOther(), CAnnot_id_Base::SetOther(), CSeq_id_Base::SetOther(), CBiostruc_id_Base::SetOther_database(), CPiecewise_Base::C_E_Piecewise::SetOtherwise(), CSeq_align_Base::C_Segs::SetPacked(), CSeq_loc_Base::SetPacked_int(), CSeq_loc_Base::SetPacked_pnt(), CAction_choice_Base::SetParse(), CMacro_action_choice_Base::SetParse(), COrgName_Base::C_Name::SetPartial(), CApply_content_Base::C_ContExp::C_E_ContExp::SetPartialdiff_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetPartialdiff_mmlclass(), CContExp_Base::SetPartialdiff_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetPartialdiff_mmlclass(), CMathExpression_Base::C_ContExp::SetPartialdiff_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetPartialdiff_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetPartialdiff_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetPartialdiff_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetPartialdiff_mmlclass(), CPub_Base::SetPat_id(), CPub_Base::SetPatent(), CSeq_id_Base::SetPatent(), CSeqdesc_Base::SetPdb(), CSeq_id_Base::SetPdb(), CPC_StereoCenter_Base::SetPentagonal(), CMacro_action_choice_Base::SetPerform_autofix(), CPiecewise_Base::C_E_Piecewise::SetPiece(), CApply_content_Base::C_ContExp::C_E_ContExp::SetPiecewise(), CBind_content_Base::C_ContExp::C_E_ContExp::SetPiecewise(), CContExp_Base::SetPiecewise(), CImpliedMrow_Base::C_E::C_ContExp::SetPiecewise(), CMathExpression_Base::C_ContExp::SetPiecewise(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetPiecewise(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetPiecewise(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetPiecewise(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetPiecewise(), CSeqdesc_Base::SetPir(), CSeq_id_Base::SetPir(), CPC_StereoCenter_Base::SetPlanar(), CSeq_loc_Base::SetPnt(), CCi_content_Base::C_E::SetPresentationExpression(), CCn_content_Base::C_E::SetPresentationExpression(), CCsymbol_content_Base::C_E::SetPresentationExpression(), CImpliedMrow_Base::C_E::SetPresentationExpression(), CMathExpression_Base::SetPresentationExpression(), CMsrowExpression_Base::C_MathExpression::SetPresentationExpression(), CMstackExpression_Base::C_MathExpression::SetPresentationExpression(), CMultiScriptExpression_Base::C_MN::C_MathExpression::SetPresentationExpression(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::SetPresentationExpression(), CMarkov_chain_params_Base::C_E_Probabilities::SetPrev_order(), CSeqdesc_Base::SetPrf(), CSeq_id_Base::SetPrf(), CGC_TypedSeqId_Base::SetPrivate(), CCit_art_Base::C_From::SetProc(), CPub_Base::SetProc(), CApply_content_Base::C_ContExp::C_E_ContExp::SetProduct_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetProduct_mmlclass(), CContExp_Base::SetProduct_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetProduct_mmlclass(), CMathExpression_Base::C_ContExp::SetProduct_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetProduct_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetProduct_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetProduct_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetProduct_mmlclass(), CPluginValue_Base::SetProject(), CEntrez_general_Base::C_Data::SetProt(), CSeqFeatData_Base::SetProt(), CSimpleVariant_Base::C_Type::SetProt_ext(), CSimpleVariant_Base::C_Type::SetProt_silent(), CSimpleVariant_Base::C_Type::SetProt_sub(), CProduct_pos_Base::SetProtpos(), CBlast4_queries_Base::SetPssm(), CConstraint_choice_Base::SetPub(), CFix_caps_action_Base::SetPub(), CProjdesc_Base::SetPub(), CAnnotdesc_Base::SetPub(), CSeqdesc_Base::SetPub(), CSeqFeatData_Base::SetPub(), CFeat_qual_legal_val_choice_Base::SetQual(), CApply_content_Base::C_ContExp::C_E_ContExp::SetQuantifier_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetQuantifier_mmlclass(), CContExp_Base::SetQuantifier_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetQuantifier_mmlclass(), CMathExpression_Base::C_ContExp::SetQuantifier_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetQuantifier_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetQuantifier_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetQuantifier_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetQuantifier_mmlclass(), CBlast4_value_Base::SetQuery_mask(), CBlast4_reply_body_Base::SetQueue_search(), CBlast4_request_body_Base::SetQueue_search(), CPluginValueConstraint_Base::SetRange(), CInt_fuzz_Base::SetRange(), CPC_Group_Base::C_Repeat_count::SetRange(), CAaLocation_Base::SetRange(), CCount_Base::SetRange(), CNtIntLimit_Base::SetRange(), CNtLocation_Base::SetRange(), CNumbering_Base::SetReal(), CSeq_graph_Base::C_Graph::SetReal(), CSeqTable_multi_data_Base::SetReal_scaled(), CNumbering_Base::SetRef(), CSeq_ext_Base::SetRef(), CCdd_descr_Base::SetReference(), CFeature_evidence_Base::SetReference(), CUpdate_comment_Base::SetReference(), CModel_coordinate_set_Base::C_Coordinates::SetReference(), CPluginReplyAction_Base::SetRefresh_project(), CGC_TypedSeqId_Base::SetRefseq(), CID2_Reply_Base::C_Reply::SetReget_blob(), CID2_Request_Base::C_Request::SetReget_blob(), CConvert_feature_dst_options_Base::SetRegion(), CBiostruc_feature_Base::C_Location::SetRegion(), CAnnotdesc_Base::SetRegion(), CUpdate_comment_Base::SetReject_loc(), CBiostruc_source_Base::C_Version_of_database::SetRelease_date(), CApply_content_Base::C_ContExp::C_E_ContExp::C_DeprecatedContExp::SetReln(), CBind_content_Base::C_ContExp::C_E_ContExp::C_DeprecatedContExp::SetReln(), CContExp_Base::C_DeprecatedContExp::SetReln(), CImpliedMrow_Base::C_E::C_ContExp::C_DeprecatedContExp::SetReln(), CMathExpression_Base::C_ContExp::C_DeprecatedContExp::SetReln(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetReln(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetReln(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetReln(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_DeprecatedContExp::SetReln(), CRMReply_Base::SetRemap(), CRMRequest_Base::SetRemap(), CAction_choice_Base::SetRemove(), CText_transform_Base::SetRemove(), CSeqEdit_Cmd_Base::SetRemove_annot(), CSeqEdit_Cmd_Base::SetRemove_desc(), CMacro_action_choice_Base::SetRemove_descriptor(), CMacro_action_choice_Base::SetRemove_duplicate_features(), CMacro_action_choice_Base::SetRemove_feature(), CSeqEdit_Cmd_Base::SetRemove_id(), CAction_choice_Base::SetRemove_outside(), CSeqEdit_Cmd_Base::SetRemove_seqentry(), CMacro_action_choice_Base::SetRemove_sequences(), CTMgr_Reply_Base::SetRemove_user_tracks(), CTMgr_Request_Base::SetRemove_user_tracks(), CMacro_action_choice_Base::SetRemove_xrefs(), CTMgr_Reply_Base::SetRename_trackset(), CTMgr_Request_Base::SetRename_trackset(), CSimpleVariant_Base::C_Type::SetRepeat(), CCdd_descr_Base::SetRepeats(), CSeqEdit_Cmd_Base::SetReplace_annot(), CUpdate_comment_Base::SetReplaces(), CSeqEdit_Cmd_Base::SetReset_descr(), CSeqEdit_Cmd_Base::SetReset_ids(), CSeqEdit_Cmd_Base::SetReset_seqattr(), CSeqEdit_Cmd_Base::SetReset_seqentry(), CSeqEdit_Cmd_Base::SetReset_setattr(), CChem_graph_pntrs_Base::SetResidues(), CID2_Request_Get_Blob_Info_Base::C_Blob_id::SetResolve(), CTMgr_Reply_Base::SetResolve_track_items(), CTMgr_Request_Base::SetResolve_track_items(), CMacro_action_choice_Base::SetRetranslate_cds(), CTMgr_Reply_Base::SetRetrieve_tracksets(), CTMgr_Request_Base::SetRetrieve_tracksets(), CSeqFeatData_Base::SetRna(), CField_pair_type_Base::SetRna_field(), CField_type_Base::SetRna_field(), CMove_Base::SetRotate(), CSeqFeatData_Base::SetRsite(), CBiostruc_feature_Base::C_Property::SetScript(), CResults_Base::SetSearch(), CTaxon1_req_Base::SetSearchname(), CSeq_ext_Base::SetSeg(), CApply_content_Base::C_ContExp::C_E_ContExp::SetSemantics(), CBind_content_Base::C_ContExp::C_E_ContExp::SetSemantics(), CBvar_Base::C_DC::C_CS::SetSemantics(), CBvar_Base::C_CD::C_CS::SetSemantics(), CContExp_Base::SetSemantics(), CImpliedMrow_Base::C_E::C_ContExp::SetSemantics(), CMathExpression_Base::C_ContExp::SetSemantics(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetSemantics(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetSemantics(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetSemantics(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetSemantics(), CCn_content_Base::C_E::SetSep(), CSeqFeatData_Base::SetSeq(), CSeq_entry_Base::SetSeq(), CVariation_Base::C_Data::SetSeq(), CBlast4_value_Base::SetSeq_align(), CProjectItem_Base::C_Item::SetSeq_align(), CSeqTestResults_Base::C_Source::SetSeq_align(), CBlast4_value_Base::SetSeq_align_set(), CProjectItem_Base::C_Item::SetSeq_align_set(), CID2S_Chunk_Content_Base::SetSeq_annot(), CID2S_Chunk_Content_Base::SetSeq_annot_place(), CID2S_Chunk_Content_Base::SetSeq_assembly(), CSeqEdit_Cmd_ChangeSeqAttr_Base::C_Data::SetSeq_data(), CID2S_Chunk_Content_Base::SetSeq_data(), CID2S_Chunk_Content_Base::SetSeq_descr(), CSeqTestResults_Base::C_Source::SetSeq_feat(), CBlast4_value_Base::SetSeq_id(), CID2_Seq_id_Base::SetSeq_id(), CID2S_Bioseq_Ids_Base::C_E::SetSeq_id(), CID2S_Chunk_Data_Base::C_Id::SetSeq_id(), CSeqTestResults_Base::C_Source::SetSeq_id(), CID2S_Seq_loc_Base::SetSeq_id_interval(), CID2S_Seq_loc_Base::SetSeq_id_ints(), CPluginValueConstraint_Base::SetSeq_length_range(), CBlast4_value_Base::SetSeq_loc(), CID2S_Chunk_Content_Base::SetSeq_map(), CSeq_annot_Base::C_Data::SetSeq_table(), CFeature_evidence_Base::SetSeqfeat(), CGC_GenomicPart_Base::SetSeqs(), CConstraint_choice_Base::SetSequence(), CTMgr_GenomeContext_Base::SetSequence(), CVariation_ref_Base::C_Data::SetSet(), CSeq_entry_Base::SetSet(), CVariation_Base::C_Data::SetSet(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_setlist_constructor_mmlclass::SetSet(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_setlist_constructor_mmlclass::SetSet(), CContExp_Base::C_Nary_setlist_constructor_mmlclass::SetSet(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetSet(), CMathExpression_Base::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetSet(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetSet(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetSet(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetSet(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_setlist_constructor_mmlclass::SetSet(), CLocation_edit_type_Base::SetSet_3_partial(), CLocation_edit_type_Base::SetSet_5_partial(), CLocation_edit_type_Base::SetSet_both_partial(), CSeqEdit_Cmd_Base::SetSet_descr(), CBiostruc_feature_Base::C_Location::SetSimilarity(), CVariant_Base::SetSimple(), CReplace_func_Base::SetSimple_replace(), CPluginArg_Base::C_Data::SetSingle(), CGC_Replicon_Base::C_Sequence::SetSingle(), CAaLocation_Base::SetSite(), CNtIntLimit_Base::SetSite(), CNtLocation_Base::SetSite(), CMacro_action_choice_Base::SetSort_fields(), CConstraint_choice_Base::SetSource(), CSeqdesc_Base::SetSource(), CCdd_descr_Base::SetSource_id(), CField_pair_type_Base::SetSource_qual(), CField_type_Base::SetSource_qual(), CSeqdesc_Base::SetSp(), CSeq_align_Base::C_Segs::SetSparse(), CSurface_coordinates_Base::C_Surface::SetSphere(), CRegion_boundary_Base::SetSphere(), CSeq_align_Base::C_Segs::SetSpliced(), CPC_StereoCenter_Base::SetSquareplanar(), CAnnotdesc_Base::SetSrc(), CTable_match_type_Base::SetSrc_qual(), CGCClientResponse_Base::SetSrvr_error(), CResidue_graph_pntr_Base::SetStandard(), CGnomon_param_Base::C_Param::SetStart(), CAffil_Base::SetStd(), CDate_Base::SetStd(), CGnomon_param_Base::C_Param::SetStop(), CLocation_edit_type_Base::SetStrand(), CMolinfo_field_pair_Base::SetStrand(), CConstraint_choice_Base::SetString(), CSearch_func_Base::SetString_constraint(), CField_pair_type_Base::SetStruc_comment_field(), CField_type_Base::SetStruc_comment_field(), CEntrez_general_Base::C_Data::SetStrucAnnot(), CNcbi_mime_asn1_Base::SetStrucseq(), CNcbi_mime_asn1_Base::SetStrucseqs(), CEntrez_general_Base::C_Data::SetStructure(), CPub_Base::SetSub(), CBiostruc_feature_Base::C_Location::SetSubgraph(), CProjectItem_Base::C_Item::SetSubmit(), CDelins_Base::C_Inserted_seq_info::SetSubseq(), CInsertion_Base::C_Seqinfo::SetSubseq(), CApply_content_Base::C_ContExp::C_E_ContExp::SetSum_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetSum_mmlclass(), CContExp_Base::SetSum_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetSum_mmlclass(), CMathExpression_Base::C_ContExp::SetSum_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetSum_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetSum_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetSum_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetSum_mmlclass(), CTMgr_Reply_Base::SetSupported_assemblies(), CTMgr_Request_Base::SetSupported_assemblies(), CCoordinates_Base::SetSurface(), CAction_choice_Base::SetSwap(), CSeq_id_Base::SetSwissprot(), CTMgr_Reply_Base::SetSwitch_display_tracks(), CTMgr_Request_Base::SetSwitch_display_tracks(), CTMgr_DisplayTrackChoice_Base::SetSwitch_exception(), CCdd_descr_Base::SetTax_source(), CTaxon1_resp_Base::SetTaxabyid(), CMolinfo_field_pair_Base::SetTechnique(), CEntrez2_boolean_element_Base::SetTerm(), CPC_StereoCenter_Base::SetTetrahedral(), CPrintForm_Base::SetText(), CSource_qual_val_choice_Base::SetTextqual(), CSurface_coordinates_Base::C_Surface::SetTmesh(), CMi_Base::C_E_Mi::SetToken_content(), CMn_Base::C_E_Mn::SetToken_content(), CMo_Base::C_E_Mo::SetToken_content(), CMs_Base::C_E_Ms::SetToken_content(), CMtext_Base::C_E_Mtext::SetToken_content(), CCi_content_Base::C_E::C_PresentationExpression::SetTokenExpression(), CCn_content_Base::C_E::C_PresentationExpression::SetTokenExpression(), CCsymbol_content_Base::C_E::C_PresentationExpression::SetTokenExpression(), CImpliedMrow_Base::C_E::C_PresentationExpression::SetTokenExpression(), CMathExpression_Base::C_PresentationExpression::SetTokenExpression(), CMsrowExpression_Base::C_MathExpression::C_PresentationExpression::SetTokenExpression(), CMstackExpression_Base::C_MathExpression::C_PresentationExpression::SetTokenExpression(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_PresentationExpression::SetTokenExpression(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_PresentationExpression::SetTokenExpression(), CDbsnpTooltipServiceReply_Base::SetTooltip_data(), CMolinfo_field_pair_Base::SetTopology(), CSeq_id_Base::SetTpd(), CSeq_id_Base::SetTpe(), CSeq_id_Base::SetTpg(), CTMgr_CreateRemoteTrackRequest_Base::C_Track_db::SetTrack(), CTMgr_DisplayTrackChoice_Base::SetTrack(), CTMgr_Reply_Base::SetTrack_attr_values(), CTMgr_Request_Base::SetTrack_attr_values(), CBiostruc_feature_Base::C_Property::SetTransform(), CMove_Base::SetTranslate(), CConstraint_choice_Base::SetTranslation(), CSurface_coordinates_Base::C_Surface::SetTriangles(), CRNA_ref_Base::C_Ext::SetTRNA(), CPC_StereoCenter_Base::SetTshape(), CSeqFeatData_Base::SetTxinit(), CApply_content_Base::C_ContExp::C_E_ContExp::SetUnary_arith_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetUnary_arith_mmlclass(), CContExp_Base::SetUnary_arith_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetUnary_arith_mmlclass(), CMathExpression_Base::C_ContExp::SetUnary_arith_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetUnary_arith_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetUnary_arith_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetUnary_arith_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetUnary_arith_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetUnary_elementary_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetUnary_elementary_mmlclass(), CContExp_Base::SetUnary_elementary_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetUnary_elementary_mmlclass(), CMathExpression_Base::C_ContExp::SetUnary_elementary_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetUnary_elementary_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetUnary_elementary_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetUnary_elementary_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetUnary_elementary_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetUnary_functional_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetUnary_functional_mmlclass(), CContExp_Base::SetUnary_functional_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetUnary_functional_mmlclass(), CMathExpression_Base::C_ContExp::SetUnary_functional_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetUnary_functional_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetUnary_functional_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetUnary_functional_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetUnary_functional_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetUnary_linalg_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetUnary_linalg_mmlclass(), CContExp_Base::SetUnary_linalg_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetUnary_linalg_mmlclass(), CMathExpression_Base::C_ContExp::SetUnary_linalg_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetUnary_linalg_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetUnary_linalg_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetUnary_linalg_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetUnary_linalg_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetUnary_logical_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetUnary_logical_mmlclass(), CContExp_Base::SetUnary_logical_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetUnary_logical_mmlclass(), CMathExpression_Base::C_ContExp::SetUnary_logical_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetUnary_logical_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetUnary_logical_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetUnary_logical_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetUnary_logical_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetUnary_set_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetUnary_set_mmlclass(), CContExp_Base::SetUnary_set_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetUnary_set_mmlclass(), CMathExpression_Base::C_ContExp::SetUnary_set_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetUnary_set_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetUnary_set_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetUnary_set_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetUnary_set_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::SetUnary_veccalc_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::SetUnary_veccalc_mmlclass(), CContExp_Base::SetUnary_veccalc_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::SetUnary_veccalc_mmlclass(), CMathExpression_Base::C_ContExp::SetUnary_veccalc_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::SetUnary_veccalc_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::SetUnary_veccalc_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::SetUnary_veccalc_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::SetUnary_veccalc_mmlclass(), CGC_Assembly_Base::SetUnit(), CCdd_descr_Base::SetUpdate_date(), CAnnotdesc_Base::SetUpdate_date(), CSeqdesc_Base::SetUpdate_date(), CMacro_action_choice_Base::SetUpdate_replaced_ecnumbers(), CMacro_action_choice_Base::SetUpdate_sequences(), CBiostruc_feature_Base::C_Property::SetUser(), CPrintForm_Base::SetUser(), CAnnotdesc_Base::SetUser(), CSeqdesc_Base::SetUser(), CSeqFeatData_Base::SetUser(), CEMyNCBIResult_Base::C_UE::SetUU(), CSeqFeatData_Base::SetVariation(), CVariation_ref_Base::C_E_Consequence::SetVariation(), CVariation_Base::C_E_Consequence::SetVariation(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_constructor_mmlclass::SetVector(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_constructor_mmlclass::SetVector(), CContExp_Base::C_Nary_constructor_mmlclass::SetVector(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_constructor_mmlclass::SetVector(), CMathExpression_Base::C_ContExp::C_Nary_constructor_mmlclass::SetVector(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetVector(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetVector(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetVector(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_constructor_mmlclass::SetVector(), CGBenchServiceReply_Base::SetVersion_update(), CGBenchServiceRequest_Base::SetVersion_update(), CSeq_loc_Base::SetWhole(), CID2S_Seq_loc_Base::SetWhole_gi_range(), CID2S_Seq_loc_Base::SetWhole_seq_id(), CSeqDBVol::x_OpenGiFile(), CSeqDBVol::x_OpenPigFile(), CSeqDBVol::x_OpenStrFile(), and CSeqDBVol::x_OpenTiFile().
◆ Allocate() void * CObjectMemoryPool::Allocate ( size_t size ) ◆ AtomicReleaseTo() [1/2]template<class C , class Locker >
◆ AtomicReleaseTo() [2/2]template<class C , class Locker >
◆ AtomicResetFrom() [1/2]template<class C , class Locker >
◆ AtomicResetFrom() [2/2]template<class C , class Locker >
◆ AtomicSwap() [1/2]template<class C , class Locker >
◆ AtomicSwap() [2/2]template<class C , class Locker >
◆ CanBeDeleted() bool CObject::CanBeDeleted ( void ) const inline ◆ CConstIRef() [1/10]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
◆ CConstIRef() [2/10]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Move constructor from an existing CRef object of derived type.
Definition at line 2235 of file ncbiobj.hpp.
◆ CConstIRef() [3/10]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
◆ CConstIRef() [4/10]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Constructor from an existing CRef object of derived type.
Definition at line 2227 of file ncbiobj.hpp.
◆ CConstIRef() [5/10]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
◆ CConstIRef() [6/10]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Constructor for ENull pointer.
Definition at line 2179 of file ncbiobj.hpp.
◆ CConstIRef() [7/10]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Constructor for explicit type conversion from pointer to object.
Definition at line 2184 of file ncbiobj.hpp.
◆ CConstIRef() [8/10]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Constructor for explicit type conversion from pointer to object.
Definition at line 2190 of file ncbiobj.hpp.
◆ CConstIRef() [9/10]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
◆ CConstIRef() [10/10]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
◆ CConstRef() [1/10]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
◆ CConstRef() [2/10]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
◆ CConstRef() [3/10]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Constructor from an existing CRef object of derived type.
Definition at line 1342 of file ncbiobj.hpp.
◆ CConstRef() [4/10]template<class C , class Locker >
◆ CConstRef() [5/10]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Move constructor from an existing CRef object of derived type.
Definition at line 1351 of file ncbiobj.hpp.
◆ CConstRef() [6/10]template<class C , class Locker >
Constructor for ENull pointer.
Definition at line 1287 of file ncbiobj.hpp.
◆ CConstRef() [7/10]template<class C , class Locker >
Constructor for explicit type conversion from pointer to object.
Definition at line 1292 of file ncbiobj.hpp.
◆ CConstRef() [8/10]template<class C , class Locker >
Constructor for explicit type conversion from pointer to object.
Definition at line 1299 of file ncbiobj.hpp.
◆ CConstRef() [9/10]template<class C , class Locker >
◆ CConstRef() [10/10]template<class C , class Locker >
◆ CheckReferenceOverflow() void CObject::CheckReferenceOverflow ( TCount count ) const private ◆ CIRef() [1/8]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Move constructor from existing ref of derived type.
Definition at line 2086 of file ncbiobj.hpp.
◆ CIRef() [2/8]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Constructor from existing ref of derived type.
Definition at line 2072 of file ncbiobj.hpp.
◆ CIRef() [3/8]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Constructor from existing ref.
Definition at line 2064 of file ncbiobj.hpp.
◆ CIRef() [4/8]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Constructor for ENull pointer.
Definition at line 2053 of file ncbiobj.hpp.
◆ CIRef() [5/8]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Constructor for explicit type conversion from pointer to object.
Definition at line 2058 of file ncbiobj.hpp.
◆ CIRef() [6/8]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Constructor for explicit type conversion from pointer to object.
Definition at line 2093 of file ncbiobj.hpp.
◆ CIRef() [7/8]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Move constructor from existing ref.
Definition at line 2078 of file ncbiobj.hpp.
◆ CIRef() [8/8]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
◆ CleanWeakRefs() void CWeakObject::CleanWeakRefs ( void ) const protected ◆ Clear() void CPtrToObjectProxy::Clear ( void ) ◆ CObject() [1/2] ◆ CObject() [2/2] CObject::CObject ( void ) ◆ CObjectEx() CObjectEx::CObjectEx ( void ) inlineDefinition at line 2533 of file ncbiobj.hpp.
◆ CObjectFor()template<typename T >
template<class... Args>
Definition at line 2340 of file ncbiobj.hpp.
◆ CObjectMemoryPool() [1/2] ◆ CObjectMemoryPool() [2/2] CObjectMemoryPool::CObjectMemoryPool ( size_t chunk_size =0
) ◆ ConstRef()
Template function for conversion of const object pointer to CConstRef.
Definition at line 2024 of file ncbiobj.hpp.
Referenced by CBlob_Annot_Info::AddAnnotInfo(), CUnculTaxTool::AddBioSource(), CSeqTableLocColumns::AddExtraColumn(), CRangeWithFuzz::AddFuzzFrom(), CRangeWithFuzz::AddFuzzTo(), CMasterSeqSegments::AddSegments(), CTSE_ScopeInfo::AddUsedTSE(), CMacroBioData_BioSourceIter::Begin(), CMacroBioData_PubdescIter::Begin(), CMacroBioData_SeqdescIter::Begin(), CMacroBioData_MolInfoIter::Begin(), CMacroBioData_UserObjectIter::Begin(), CMacroBioData_DBLinkIter::Begin(), CMacroBioData_AutodefOptsIter::Begin(), CBuildAlnVecJob::Build(), CMActionTreeBuilder::BuildActionTree(), CSeqMap::CanResolveRange(), CDesktopDataBuilder::CDesktopDataBuilder(), CollectDescriptors(), CBlobSplitterImpl::CopyAnnot(), CFeatureGenePanel::CreateControls(), CRNAPanel::CreateControls(), CPSGL_Blob_Processor::CreateDLBlobId(), CRemoveName::CRemoveName(), CSeqMap_CI::CSeqMap_CI(), CBioseqEditor::EditSelection(), CDataSource::FindBioseq_Lock(), CDataSource::FindBioseq_set_Lock(), CDataSource::FindSeq_annot_Lock(), CDataSource::FindSeq_entry_Lock(), CDataSource::FindSeq_feat_Lock(), CDesktopItem::GetAssociatedObject(), SPsgBioseqInfo::GetDLBlobId(), CUser_field::GetFieldsMap(), CCreatedFeat_Ref::GetMappedFeature(), CAnnotObject_Info::GetObject(), CSeq_feat_Handle::GetOriginalSeq_feat(), GetOverlappingFeatures(), CSeq_feat_Handle::GetPlainSeq_feat(), CCreateFeat::GetProductId(), CPsgBlobId::GetPsgBlobId(), CSeq_loc_CI::GetRangeAsSeq_loc(), CGBDataLoader::GetSatSatkey(), CTSE_Info::GetSegSetMaster(), CSeq_align_Handle::GetSeq_align(), CSeq_graph_Handle::GetSeq_graph(), CSeqTable_column::GetSeq_id(), CSeqTable_column::GetSeq_int(), CSeqTable_column::GetSeq_loc(), CSeqMap::GetSeqMapForSeq_loc(), CGencollIdMapper::GetSynonyms(), GetWGSMasterDescr(), CAlnContainer::insert(), IsEditable(), CVariationUtilities::IsReferenceCorrect(), LaunchAlignmentAssistant(), LaunchDefaultEditor(), MakeMaskingBioseq(), CMacroBioData_BioSourceIter::Next(), CMacroBioData_PubdescIter::Next(), CMacroBioData_SeqdescIter::Next(), CMacroBioData_MolInfoIter::Next(), CMacroBioData_UserObjectIter::Next(), CMacroBioData_DBLinkIter::Next(), CMacroBioData_AutodefOptsIter::Next(), CBioseqEditor::OnPropagateSelectedFeatures(), CProcessor_ID2AndSkel::ProcessObjStream(), CSeq_entry::ReassignConflictingIds(), CTSE_ScopeInfo::ReleaseUsedTSEs(), CSeq_loc_Conversion::ReverseFuzz(), CDemoApp::Run(), s_GetCdsByProduct(), s_GetrRNAProductsSuspectRuleSet(), s_GetSeqIdAlias_GenBankRefSeq(), CUnlockedTSEsGuard::SaveLock(), CIdentifiersPanel::SetIdXrefs(), CObjectListWidgetSel::SetObjects(), sx_AddId(), CSUCTextGather::unified_notify(), CSequenceUpdater::Update(), CTSE_Split_Info::x_AddChunksForGetRecords(), CMacroFunction_EditFeatLocation::x_CheckInitFeature(), CDataSource::x_CollectBioseqs(), CTableViewWithTextViewNav::x_EditObject(), CValidatePanel::x_FindGraphicalSequenceView(), CGencollIdMapper::x_FindParentSequence(), CScope_Impl::x_GetBioseqHandle(), CFlatGatherer::x_GetFeatsOnCdsProduct(), CFlatGatherer::x_GetFeatsOnCdsProductIdx(), CGencollIdMapper::x_GetIdFromSeqAndSpec(), CSequenceUpdater::x_GetNewAlign_Replace(), CSeqMap::x_GetSeq_literal(), CSeq_loc_Mapper::x_InitializeSeqMap(), CTSE_Info::x_MapSNP_Table(), CSeqMap_CI::x_Push(), CWiggleExportJob::x_RecalculateGraph(), CTSE_ScopeInfo::x_RestoreAdded(), CAnnot_Collector::x_SearchRange(), CMacroBioData_StructCommentIter::x_StepToNextStructComment(), CTSE_Info::x_UnmapSNP_Table(), CValidError_bioseq::x_ValidateMultiplePubs(), CGff3Writer::x_WriteBioseqHandle(), and CEditObjectFeaturePropagate::xInit().
◆ CPtrToObjectProxy() ◆ CRef() [1/8]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Copy constructor from an existing CRef object of derived type.
Definition at line 668 of file ncbiobj.hpp.
◆ CRef() [2/8]template<class C , class Locker >
Copy constructor from an existing CRef object.
Definition at line 659 of file ncbiobj.hpp.
◆ CRef() [3/8]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Move constructor from an existing CRef object of derived type.
Definition at line 685 of file ncbiobj.hpp.
◆ CRef() [4/8]template<class C , class Locker >
Constructor for ENull pointer.
Definition at line 640 of file ncbiobj.hpp.
◆ CRef() [5/8]template<class C , class Locker >
Constructor for explicit type conversion from pointer to object.
Definition at line 645 of file ncbiobj.hpp.
◆ CRef() [6/8]template<class C , class Locker >
Constructor for explicit type conversion from pointer to object.
Definition at line 652 of file ncbiobj.hpp.
◆ CRef() [7/8]template<class C , class Locker >
Move constructor from an existing CRef object.
Definition at line 675 of file ncbiobj.hpp.
◆ CRef() [8/8]template<class C , class Locker >
Constructor for null pointer.
Definition at line 634 of file ncbiobj.hpp.
◆ CWeakIRef() [1/4]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Constructor for ENull pointer.
Definition at line 2821 of file ncbiobj.hpp.
◆ CWeakIRef() [2/4]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Constructor for pointer to the interface.
Definition at line 2826 of file ncbiobj.hpp.
◆ CWeakIRef() [3/4]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Constructor for explicit type conversion from pointer to object.
Definition at line 2832 of file ncbiobj.hpp.
◆ CWeakIRef() [4/4]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
◆ CWeakObject() CWeakObject::CWeakObject ( void )Definition at line 1255 of file ncbiobj.cpp.
◆ CWeakRef() [1/4]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Constructor for ENull pointer.
Definition at line 2675 of file ncbiobj.hpp.
◆ CWeakRef() [2/4]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Constructor for pointer to a particular object.
Definition at line 2682 of file ncbiobj.hpp.
◆ CWeakRef() [3/4]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Constructor for explicit type conversion from pointer to object.
Definition at line 2693 of file ncbiobj.hpp.
◆ CWeakRef() [4/4]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ Deallocate() void CObjectMemoryPool::Deallocate ( void * ptr ) ◆ DebugDump()Define method for dumping debug information.
Implements CDebugDumpable.
Reimplemented in CSeqDBOIDList, CSeqDBImpl, CSeqDB_AliasMask, CSeqDB_BitSet, CSeqDBAliasFile, CBlastOptionsLocal, CSerialObject, CRemoteBlastDbDataLoader, CBlastDbDataLoader, CSeqDB, CBlastOptions, CSBlastProgress, CBlastSeqLoc, CBlastMaskLoc, CBlast_Message, CBlastSeqSrcIterator, CBlastSeqSrc, CPSIDiagnosticsResponse, CPSIDiagnosticsRequest, CPSIMatrix, CPSIMsa, CBlastHSPResults, CBlastGapAlignStruct, CBlastEffectiveLengthsParameters, CBlastEffectiveLengthsOptions, CBlastScoringParameters, CBlastScoringOptions, CBlastScoreBlk, CBlastDatabaseOptions, CPSIBlastOptions, CBlastHitSavingParameters, CBlastHitSavingOptions, CBlastExtensionParameters, CBlastExtensionOptions, CBlast_ExtendWord, CBlastInitialWordParameters, CBlastInitialWordOptions, CLookupTableWrap, CLookupTableOptions, CQuerySetUpOptions, CBlastQueryInfo, and CBLAST_SequenceBlk.
Definition at line 988 of file ncbiobj.cpp.
References CDebugDumpContext::Log(), and CDebugDumpContext::SetFrame().
Referenced by CSeqDB::DebugDump(), CSerialObject::DebugDump(), CSeqDBAliasFile::DebugDump(), CSeqDB_BitSet::DebugDump(), CSeqDB_AliasMask::DebugDump(), CSeqDBImpl::DebugDump(), and CSeqDBOIDList::DebugDump().
◆ Delete() ◆ DeleteThis() void CObject::DeleteThis ( void ) protectedvirtualVirtual method "deleting" this object.
Method is called whenever by all other indicators this object should be deleted. These indicators are: last reference to the object is removed, object created on heap and method DoNotDeleteThisObject() was not called. Default implementation actually deletes the object, but derived classes are free to do whatever they want (e.g. if they know that they are allocated at some pool they should return themselves to this pool).
Reimplemented in CNCBlobVerManager, SNCBlobVerData, CRWLockHolder, SNetServerInPool, SNetServerConnectionImpl, SDiscoveredServers, SCompoundIDImpl, and SCompoundIDFieldImpl.
Definition at line 809 of file ncbiobj.cpp.
References _ASSERT, count, CObjectMemoryPool::Delete(), eInitCounterInHeap, eInitCounterInPool, and CObject::m_Counter.
Referenced by CObject::RemoveLastReference().
◆ DoDeleteThisObject() void CObject::DoDeleteThisObject ( void ) virtualMark this object as allocated in heap – object can be deleted.
Definition at line 926 of file ncbiobj.cpp.
References count, eMagicCounterDeleted, eMagicCounterPoolDeleted, ERR_POST_X, CObject::m_Counter, NCBI_THROW, CObject::ObjectStateCanBeDeleted(), CObject::ObjectStateValid(), and ObjFatal.
Referenced by CObjectMemoryPoolChunk::CreateChunk(), CThread::CThread(), and CTls< CCgiRequestProcessor >::CTls().
◆ DoNotDeleteThisObject() void CObject::DoNotDeleteThisObject ( void ) virtual ◆ Empty() [1/2]template<class C , class Locker >
Check if CRef is empty – not pointing to any object, which means having a null value.
Definition at line 719 of file ncbiobj.hpp.
Referenced by AccessionToKey(), CDBUDRandomMapper::Add(), CBlast4_parameters::Add(), HitDistributor::addBatch(), AddNIDSeqId(), CCleanup::AddProtein(), CBuildDatabase::AddSequences(), CSerialMessageHandler::AddValidErrItem(), alp_data::alp_data(), MultipleAlignment::appendAlignment(), CTable2AsnContext::ApplyAccession(), CSourceModParser::ApplyAllMods(), CDB_String::Assign(), BlastHitList2SeqAlign_OMF(), BLASTHspListToSeqAlign(), BOOST_AUTO_TEST_CASE(), BuildAln(), CSeqAnnotFromFasta::BuildMasterSlaveSeqAlign(), CBlastDbBioseqSource::CBlastDbBioseqSource(), CBlastDbDataLoader::CBlastDbDataLoader(), CCmdLineBlastXMLReportData::CCmdLineBlastXMLReportData(), CDUpdater::checkBlastAndUpdate(), CheckForEmptySequences(), CkCdRegion(), CLocalDbAdapter::CLocalDbAdapter(), CWriteDB_Impl::Close(), CClusterer::ComputeClustersFromLinks(), CDUpdater::ComputePercentIdentity(), CSubtreeBoundary::ComputeShapes(), CRemoteBlast::ConvertToRemoteMasks(), CRemoteBlast::CRemoteBlast(), CRemoteBlastDbDataLoader::CRemoteBlastDbDataLoader(), CBl2Seq::CSearchResultSet2TSeqAlignVector(), CSplitQueryTestFixture::CSplitQueryTestFixture(), CDBConnectionFactory::DispatchServerName(), CDisplaySeqalign::DisplaySeqalign(), CSimpleB2SWrapper::DoBlast2Seqs(), CPsiBlastApp::DoIterations(), CDeltaBlastApp::DoPsiBlastIterations(), CVdbFastaExtractor::DumpAll(), CSeqFormatter::DumpAll(), embl_refs(), CHttpRequest::Execute(), CPsiBlastArgs::ExtractAlgorithmOptions(), ExtractFirstSeqAlign(), CAlignFormatUtil::ExtractQuerySeqAlign(), FakeEmblBioSources(), UpdateViewer::FetchSequencesViaHTTP(), FetchSequenceViaHTTP(), CSeqAlignFilter::FilterByAccessionType(), CSeqAlignFilter::FilterByTaxonomy(), BlockFormater::findIntersectingBlocks(), CFindPub::fix_pub_equiv(), fta_build_ena_user_object(), fta_dblink_has_sra(), fta_fix_orgref(), fta_get_citgen(), fta_get_dblink_user_object(), fta_parse_structured_comment(), gb_refs_common(), CFlatFileGenerator::Generate(), CAutoAddDBLink::Get(), get_art(), get_auth_consortium(), get_auth_from_toks(), get_book(), get_pat(), get_sub(), get_sub_gsdb(), get_whole_book(), CSeqDBImpl::GetAllTaxIDs(), NSnpBins::GetBin(), CSeqDBVol::GetBioseq(), CShowBlastDefline::GetBioseqHandleDeflineAndId(), CObjMgr_RemoteQueryData::GetBioseqSet(), CObjMgrFree_RemoteQueryData::GetBioseqSet(), CDUpdater::getBlastHits(), GetBlockCount(), CDB_String::GetBulkInsertionData(), GetCitBook(), GetCitBookOld(), GetCitPatent(), GetCitSubmit(), CBlastServices::GetDatabaseInfo(), CBlastDatabaseArgs::GetDatabaseName(), CRemoteBlast::GetDatabases(), GetEmblDate(), GetEmblDescr(), CBl2Seq::GetFilteredSubjectRegions(), CLocalDbAdapter::GetFilteringAlgorithm(), CLocalDbAdapter::GetFilteringAlgorithmKey(), CSeqDBAliasFile::GetFilterTree(), GetGenBankDescr(), GetGenBankInstContig(), CSeqDBVol::GetGi(), CSearchDatabase::GetGiListLimitation(), CConnection::GetHandler(), CSeqDBImpl::GetLeafTaxIDs(), GetLowerBound(), GetMasterGIFromSeqAlign(), CSearchDatabase::GetNegativeGiListLimitation(), CBlastDbAllBioseqSource::GetNext(), CSeqDBImpl::GetNextOIDChunk(), CSeqDBGiListSet::GetNodeIdList(), GetNumAlignedResidues(), CCachedTaxon3_impl::GetOrgReply(), BlockFormater::getOverlappingPercentages(), CSeqDBVol::GetPig(), CdBlaster::getPsiBlastEValue(), CdBlaster::getPsiBlastScore(), CRemoteBlast::GetPsiNumberOfIterations(), GetPssmIdFromSeqAlign(), CRemoteBlast::GetQueries(), CQuerySplitter::GetQueryFactoryForChunk(), CCluster::GetRefSeqId(), CScorePValuesCalc::GetResult(), GetRnaRef(), CRemoteBlast::GetSearchOptions(), CFlatFileGenerator::GetSeqFeatText(), CSeqDBVol::GetSeqGI(), CSeqDBVol::GetSeqIDs(), GetSeqLength(), CBlastServices::GetSequenceParts(), CDBServiceMapperCoR::GetServer(), GetSPDate(), GetSprotDescr(), CAlignFormatUtil::GetTaxidForSeqid(), CSeqDBImpl::GetTaxIDs(), GetTrnaAnticodon(), GetUpperBound(), CSeqDBVol::GiToOid(), CSearchResults::HasAlignments(), CSeqDBVol::HashToOids(), CPhyloTreeWidget::HasScheme(), CSubtreeBoundary::Hide(), CAlignFormatUtil::HspListToHitMap(), ImpFeatPub(), CAuthorNamesContainer::ImportAuthorsFromFile(), CNSeq::Init(), InitializeRemoteBlast(), InitializeSubject(), CWriteDB_PackedSemiTree::Insert(), InsertItemInListView(), InsertItemInReportView(), CRemoteBlast::IsDbSearch(), CSimpleConstraintMatcher::IsEmpty(), CAdvancedConstraintMatcher::IsEmpty(), CAutoAddDBLink::IsInitialised(), journal(), StructureSet::LoadAlignmentsAndStructures(), LoadFeat(), CLoadStructComments::LoadSingle(), CMultiReader::LoadTemplate(), CPoolBalancer::LocallyPenalize(), CVDBThread::Main(), CTblastnNode::Main(), CIgBlastnApp::CIgWorker::Main(), CIgBlastnApp::CIgFormatter::Main(), PssmMaker::make(), Make_GI_or_PDB_String_CN3D(), Make_SeqID_String(), CDBConnectionFactory::MakeDBConnection(), CTbl2AsnApp::MakeFlatFile(), IQueryFactory::MakeLocalQueryData(), IQueryFactory::MakeRemoteQueryData(), CSeqAnnotFromFasta::MakeSeqAnnotFromFasta(), CTable2AsnContext::MergeSeqDescr(), CDUpdater::modifySeqAlignSeqEntry(), CPhyTreeView::OnBioTreeChanged(), CUpdateMultiSeq_Dlg::OnLoadMapClick(), CMultiReader::OpenFile(), CFrameFinder::operator()(), CNetScheduleConfigLoader::operator()(), SSeqDB_SeqSrc_Data::operator*(), operator+(), SSeqDB_SeqSrc_Data::operator->(), CBinsGlyph::SBinMapped::operator<(), CSeqDBVol::OptimizeGiLists(), CSubtreeBoundary::Overlaps(), CFastaReader::ParseDataLine(), PortalBookURLToCCddBookRef(), CSeqFastaReader::PostProcessIDs(), CBlastFormat::PrintArchive(), CBlastFormatterApp::PrintFormattedOutput(), CReadBlastApp::printOverlapReport(), CDUpdater::processBlastHits(), CdBlaster::processBlastHits(), CSimpleB2SWrapper::processBlastHits(), CTbl2AsnApp::ProcessHugeFile(), CdBlaster::psiBlast(), QSbuf_To_Single_Qscore_SeqGraph(), QualsToSeqID(), CHugeFileProcess::Read(), CFastaReaderEx::ReadDeltaFasta(), CBasicFastaWrapper::ReadFile(), ReadMsa(), CSubtreeBoundary::RenderBoundary(), CSubtreeBoundary::RenderBoundaryVbo(), CFileLoadManager::ResetState(), CDeltaBlast::Run(), CLocalSeqSearch::Run(), CIgBlast::Run(), CLocalVDBBlast::Run(), CPsiBlastApp::Run(), CIgBlastnApp::Run(), CIgBlastpApp::Run(), CSeqDBDemo_SeqidToBioseq::Run(), CGumbelParamsCalc::Run(), CBlastKmerSearch::Run(), CClusterer::Run(), CMultiApplication::Run(), CVDBTblastnApp::Run(), CVDBThread::RunTandemSearches(), CIgBlast::s_AppendResults(), s_CheckPValues(), s_DeflineCompare(), s_ExtractSeqIds(), s_FastaStringToBioseq(), s_GetBlastDbMd5(), s_GetRestrictedBlastSeqLocs(), s_GetSequences(), s_InitializeExportStrategy(), s_InitializeSubject(), s_MakeQueryFactory(), s_ModifySeqAlnWithFilteredSeqIDs(), s_ProcessSeqIdFilters(), s_ProcessTaxIdFilters(), s_QueryFactoryBlastSeqSrcInit(), s_SetSeqdescUser(), CDeltaBlastApp::SavePssmToFile(), CPsiBlastApp::SavePssmToFile(), SeqFeatPub(), SeqIdToIdentifier(), SetAlignedResiduesOnSequence(), CDBConnectionFactory::CServiceInfo::SetDispatchedServer(), SetMinimumPub(), CBlastAppArgs::SetOptionsForSavedStrategy(), CRemoteBlast::SetQueries(), CRemotePssmSearch::SetQuery(), CRemoteSeqSearch::SetQueryFactory(), CRemoteBlast::SetSubjectSequences(), SimplifySeqEntryForCD(), CBDB_Env::StopBackgroundWriterThread(), CQueueDataBase::StopExecutionWatcherThread(), CQueueDataBase::StopNotifThread(), CBDB_Cache::StopPurgeThread(), CQueueDataBase::StopPurgeThread(), CQueueDataBase::StopServiceThread(), CNetStorageServer::StopServiceThread(), CTestAction::TestOID(), CSeqDBVol::TiToOid(), CdBlaster::truncateBioseq(), CDUpdater::update(), CSearchFormBase::UpdateContexts(), UpdateRawBioSource(), CTable2AsnValidator::ValCollect(), CTable2AsnValidator::Validate(), CQueueDataBase::WakeupNotifThread(), CVdbFastaExtractor::Write(), CBlastDB_SeqFormatter::Write(), CBlastDB_FastaFormatter::Write(), CBlastDB_BioseqFormatter::Write(), CWriteDB_ColumnIndex::WriteBlobIndex(), CWriteDB_Volume::WriteSequence(), CBuildDatabase::x_AddMasksForSeqId(), CCleanupHugeAsnReader::x_AddTopLevelDescriptors(), CAlnGraphic::x_BuildHtmlTable(), CBlastPrelimSearch::x_BuildStdSegList(), CShowBlastDefline::x_CheckForStructureLink(), CBlastInputReader::x_CreateBioseq(), CGBankLoadingJob::x_CreateProjectItems(), CNgAlignApp::x_CreateSequenceSet(), CPsiBlastInputClustalW::x_ExtractQueryForPssm(), CPsiBlastInputData::x_ExtractQueryForPssm(), CCddInputData::x_ExtractQueryForPssm(), CShowBlastDefline::x_FillDeflineAndId(), CObjectListWidgetSel::x_FilterDuplicates(), CFlatGatherer::x_GatherSeqEntry(), CBamUILoadManager::x_GetBamRefSeqs(), CRemoteBlast::x_GetBlast4SearchRequestBody(), CBamUILoadManager::x_GetCSraRefSeqs(), CSeqDBVol::x_GetFilteredHeader(), CDeflineGenerator::x_GetGeneRefViaCDS(), CSraInputSource::x_GetNextSeq_loc(), CSeqDBImpl::x_GetOidList(), CRemoteBlast::x_GetRequestInfoFromFile(), CBuildDatabase::x_GetScope(), CDBLB_ServiceMapper::x_GetServer(), CRemoteBlast::x_GetStringFromSearchInfoReply(), CSeqDBImpl::x_GetTaxIdsForSeqId(), CSeqDBVol::x_GetTaxonomy(), CSeqDBVol::x_HaveGiList(), CRemoteBlast::x_Init(), IMacroBioDataIter::STableToApply::x_InitAndCheck(), CBlastScopeSource::x_InitBlastDatabaseDataLoader(), CBlastDbMetadata::x_InitBlastDb(), CBl2Seq::x_InitCLocalBlast(), CCmdLineBlastXML2ReportData::x_InitCommon(), CBlastDBExtractor::x_InitDefline(), CDisplaySeqalign::x_InitDefLinesHeader(), CSearchDatabase::x_InitializeDb(), CFeatureTableReader_Imp::x_InitId(), CSeqDBImpl::x_InitIdSet(), CTaxFormat::x_InitOrgTaxMetaData(), CMakeProfileDBApp::x_InitProgramParameters(), CRemoteBlast::x_InitQueries(), CTaxFormat::x_InitTaxInfoMap(), CDBConnectionFactory::x_LogConnection(), CSeq_loc_Mapper_Base::x_MapInterval(), CSGSegmentMapJob::x_MergeSeqSegments(), CMultiAlignView::x_OnSetSelection(), CDisplaySeqalign::x_PrintDefLine(), CExportStrategy::x_Process_BlastOptions(), CExportStrategy::x_Process_Pssm(), CExportStrategy::x_Process_Query(), CExportStrategy::x_Process_SearchDb(), CExportStrategy::x_Process_Subject(), CMacroApplySrcTablePanel::x_ProcessFirstLine(), CMakeClusterDBApp::x_ProcessInputFile(), CMakeBlastDBApp::x_ProcessMaskData(), CWriteDB_Impl::x_Publish(), CPsiBlastInputClustalW::x_ReadAsciiMsa(), CRemoteSeqSearch::x_RemoteBlast(), CRemotePssmSearch::x_RemoteBlast(), CBuildDatabase::x_ResolveFromSource(), CPsiBlastApp::x_RunLocalPsiBlastIterations(), CDBLBClientApp::x_RunLookup(), CTblastnApp::x_RunMTBySplitDB(), CDBLBClientApp::x_RunWhereIs(), CBlastKmer::x_SearchMultipleQueries(), CIgBlast::x_SetupNoOverlapDSearch(), CSeqDBVol::x_StringToOids(), CPsiBlastImpl::x_Validate(), CDeltaBlast::x_Validate(), CMagicBlast::x_Validate(), CSearchDatabase::x_ValidateMaskingAlgorithm(), CFastaOstreamEx::x_WriteTranslatedCds(), CMultiReader::xApplyTemplate(), CFeatTableEdit::xGenerate_mRNA_Product(), CGenbank2Asn::xGetEntry(), XMLGetDescr(), XMLGetEMBLBlock(), XMLGetInstContig(), XMLRefs(), CMultiReader::xReadASN1Text(), and CFeatureTableReader::xTranslateProtein().
◆ Empty() [2/2]template<class C , class Locker >
Check if CConstRef is empty – not pointing to any object which means having a null value.
Definition at line 1385 of file ncbiobj.hpp.
Referenced by CVDBBlastUtil::AddSubjectsToScope(), CDiscrepancyVisitorImpl< _Name >::Autofix(), BOOST_AUTO_TEST_CASE(), CAlignFormatUtil::BuildUserUrl(), CCddInputData::CCddInputData(), CLocalDbAdapter::CLocalDbAdapter(), CScorePValuesOptions::CScorePValuesOptions(), CDisplaySeqalign::DisplaySeqalign(), CAlignFormatUtil::ExtractQuerySeqAlign(), CSeqAlignFilter::FilterByAccessionType(), CSeqAlignFilter::FilterByTaxonomy(), CAlignFormatUtil::FilterSeqalignBySeqList(), fta_get_orgref_byid(), fta_replace_org(), CUser_object::GetField(), CGuiObjectInfoSeq_feat::GetLinks(), CRemoteBlast::GetMasks(), CFastaBioseqSource::GetNext(), GetProteinWeights(), CMaskedRangeSet::GetRanges(), CRemoteBlast::GetSeqAlignSets(), CMolinfo_field::GetSequenceQualFromBioseq(), TaxClient::GetTaxIDForSeqId(), GetXrpForOverlap(), CAlignFormatUtil::HspListToHitList(), CAlignFormatUtil::HspListToHitMap(), CBlastFormatUtil::InsertSubjectScores(), IsAppropriateRule(), CAlignFormatUtil::LimitSeqalignByHsps(), CScoreSeqCoverage::MakeScore(), CScoreUniqSeqCoverage::MakeScore(), CLocation_constraint::Match(), CDiscrepancyPanel::OnDblClk(), CPhyTreeView::OnProjectChanged(), PackedSeqLocToMaskedQueryRegions(), CLocalSeqSearch::Run(), CLocalPssmSearch::Run(), CFastaExportJob::Run(), s_ExtractSeqId(), s_GetBestIDForURL(), s_GetSRASeqMetadata(), s_SetProtRef(), s_TitleFromProtein(), s_UseFastaReaderDeflines(), CDeltaBlastApp::SavePssmToFile(), CPsiBlastApp::SavePssmToFile(), CIgBlastTabularInfo::SetAirrFormatData(), CMultiAlignerTest::SetDomainHits(), CIgBlastTabularInfo::SetIgAnnotation(), CPsiBlastImpl::SetPssm(), CAlignFormatUtil::SplitSeqalignByMolecularType(), CGlyphSearchVisitor::Visit(), CLinkUtils::x_AddDbxrefFeatureLinks(), CDeflineGenerator::x_AdjustProteinTitleSuffix(), CDeflineGenerator::x_AdjustProteinTitleSuffixIdx(), CIgBlast::x_AnnotateD(), CAlnGraphic::x_BuildHtmlTable(), CMaskedRangeSet::x_CombineLocs(), CWriteDB_Impl::x_CookIds(), CReferenceItem::x_CreateUniqueStr(), CShowBlastDefline::x_DisplayDefline(), CShowBlastDefline::x_DisplayDeflineTableBody(), CFeatGlyph::x_DrawFeatureBar(), CWriteDB_Impl::x_ExtractDeflines(), CShowBlastDefline::x_FormatDeflineTableLine(), CShowBlastDefline::x_FormatDeflineTableLineCSV(), CShowBlastDefline::x_FormatDeflineTableLineText(), CAlnGraphic::x_FormatGraphOverview(), CSDB_Exception::x_Init(), CCmdLineBlastXML2ReportData::x_InitCommon(), CShowBlastDefline::x_InitFormattingInfo(), CMultiAligner::x_InitParams(), CTaxFormat::x_InitTaxInfoMap(), CGeneModelTrack::x_NeedHighlight(), CMakeBlastDBApp::x_ProcessMaskData(), CWriteDB_Impl::x_Publish(), CNcbiRegistry::x_Read(), CRemoteSeqSearch::x_RemoteBlast(), CRemotePssmSearch::x_RemoteBlast(), COligoSpecificityCheck::x_SortPrimerHit(), CPsiBlastImpl::x_Validate(), CDeltaBlast::x_Validate(), CFeatTableEdit::xGenerate_mRNA_Product(), and CFeatTableEdit::xGetLinkedFeature().
◆ GetAllocFillMode() ◆ GetChunkSize() size_t CObjectMemoryPool::GetChunkSize ( void ) const inline ◆ GetData() [1/2]Get data as a reference.
Definition at line 2346 of file ncbiobj.hpp.
Referenced by CPrefetchManager_Impl::AddAction(), CBamDb::CBamDb(), CBamRefSeqIterator::CBamRefSeqIterator(), CTableDataValidate::CountBySeverity(), CValidatorReportCfgDlg::CreateControls(), CTableDataValidate::GetErrorList(), CBamDb::GetHeaderText(), CBamRefSeqIterator::GetLength(), CBamDb::GetPageSize(), CBamRefSeqIterator::GetRefSeqId(), CValidatePanel::GetSelected(), CValidatorReportCfgDlg::GetSelected(), CDB_MultiEx::NofExceptions(), CValidatePanel::OnJobResult(), CValidatePanel::OnListItemActivated(), CValidatePanel::OnListItemRightClick(), CValidatePanel::OnListItemSelected(), CValidatePanel::OnMouseMove(), CValidatorReportCfgDlg::OnReportBtnClick(), CPrefetchRequest::OnStatusChange(), CObjectFor< T >::operator const T &(), CObjectFor< T >::operator T&(), CBamRefSeqIterator::operator++(), CTableDataVcfJob::Run(), CPrefetchRequest::SetListener(), CPrefetchRequest::SetProgress(), CSeq_annot_Info::x_AddAlignIndex(), CTableDataValidate::x_CountRows(), CValidatePanel::x_DisplayList(), CTableDataValidateJob::x_FetchAll(), CTableDataValidate::x_GetRowData(), CSeq_annot_Info::x_InitFeatKeys(), CSeq_annot_Info::x_InitFeatTableKeys(), CSeq_annot_Info::x_InitGraphKeys(), CSeq_annot_Info::x_InitLocsKeys(), CSeq_annot_Info::x_MapAnnotObject(), and CValidatePanel::x_UpdateList().
◆ GetData() [2/2]Get data as a reference – const version.
Definition at line 2352 of file ncbiobj.hpp.
◆ GetErrCodeString() const char * CObjectException::GetErrCodeString ( void ) const overridevirtual ◆ GetLockedObject() [1/3] ◆ GetLockedObject() [2/3]template<class Interface >
◆ GetLockedObject() [3/3] CObject * CPtrToObjectProxy::GetLockedObject ( void ) ◆ GetLocker() [1/3]template<class C , class Locker >
Get reference to locker object.
Definition at line 699 of file ncbiobj.hpp.
◆ GetLocker() [2/3]template<class C , class Locker >
Get reference to locker object.
Definition at line 1365 of file ncbiobj.hpp.
◆ GetLocker() [3/3]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Get reference to locker object.
Definition at line 2706 of file ncbiobj.hpp.
◆ GetMallocThreshold() size_t CObjectMemoryPool::GetMallocThreshold ( void ) const inline ◆ GetNCObject()template<class C , class Locker >
Get object.
Similar to GetNonNullPointer(), except that this method returns the object whereas GetNonNullPointer() returns a pointer to the object.
Definition at line 1187 of file ncbiobj.hpp.
Referenced by CPhyloTreeDataSource::ApplyAttributes(), CSubmissionWizard::ApplySubmitCommand(), AssignNtConversion(), AssignSequenceVariant(), CMacroEngine::CallFunction(), CMacroResolver::CallFunction(), CBamAlignIterator::CBamAlignIterator(), CCSraAlignIterator::CCSraAlignIterator(), CPhyloTreeDataSource::CollapseByDistance(), CPhyloTreeDataSource::ComputeLengthsFromRoot(), CSequenceEditingEventHandler::CreateSeqSubmit(), CPhyloTreeDataSource::Cut(), CVDBGraphSeqIterator::CVDBGraphSeqIterator(), CBAMDataLoader::EstimateLoadSeconds(), CPhyloTreeDataSource::Filter(), CPhyloTreeDataSource::FilterDistances(), CPhyloTreeDataSource::FindNodes(), g_CreateSpecialSeqfeat(), CWGSSeqIterator::SAmbiguityAccess::Get2na(), CWGSSeqIterator::SAmbiguityAccess::Get2naLengthExact(), CWGSSeqIterator::SAmbiguityAccess::Get4na(), CWGSSeqIterator::SAmbiguityAccess::Get4naLengthExact(), CWGSSeqIterator::SAmbiguityAccess::GetAmbiguityBytes(), CPhyloTreeDataSource::GetBoundRect(), CCSraRefSeqIterator::GetDb(), CCSraShortReadIterator::GetDb(), CVDBGraphSeqIterator::GetDb(), CSNPDbTrackIterator::GetDb(), CSNPDbSeqIterator::GetDb(), CSNPDbGraphIterator::GetDb(), CWGSSeqIterator::GetDb(), CWGSScaffoldIterator::GetDb(), CWGSGiIterator::GetDb(), CWGSProteinIterator::GetDb(), CWGSFeatureIterator::GetDb(), CMacroBioData_PubdescIter::CSubmitblockIter::GetEditedSubmitBlock(), CWGSSeqIterator::SAmbiguityAccess::GetGapLengthExact(), CInfoRequestorLock::GetInfo(), CBlobSplitterImpl::GetLength(), CApplyStructCommentTreeItemData::GetMacroDescription(), CInfoRequestor::GetManager(), CAnnotMapping_Info::GetMappedSeq_loc_Conv(), CWGSDb_Impl::GetPatentSeq_id(), CHeapScope::GetScope(), CWGSFeatureIterator::GetSeq_feat(), CGlRenderNode::GetState(), CApplyStructCommentTreeItemData::GetVariables(), CPhyloTreeDataSource::Init(), CSeq_loc_Conversion::MakeDstMix(), NMacroUtil::MakeNcbiAutofixUserObject(), CPhyloTreeDataSource::MeasureTree(), CPhyloTreeDataSource::NewNode(), CPhyloTreeDataSource::Paste(), CGlRender::PushAttrib(), CRenderVector::PushAttrib(), CPhyloTreeDataSource::Relabel(), CPhyloTreeDataSource::Remove(), CPhyloTreeDataSource::RemoveSelected(), IPhyloTreeRender::Render(), CPhyloTreeDataSource::ReRootMidpoint(), CMacroBioData_BioSourceIter::RunEditCommand(), CMacroBioData_PubdescIter::RunEditCommand(), CMacroBioData_MolInfoIter::RunEditCommand(), CPhyloTreeDataSource::Sort(), CPhyloTreeDataSource::SortDist(), CPhyloTreeDataSource::SortLabel(), CPhyloTreeDataSource::SortLabelRange(), CTSE_Info::UpdateFeatIdIndex(), IEditMacroFunction::x_AssignReturnValue(), CLocalFileRestorer::x_AttachNewObject(), CDesktopDataBuilder::x_CreateSeqSubmit(), CMacroWorker::x_HandleOutput(), CCSraShortReadIterator::x_Init(), CWGSScaffoldIterator::x_Init(), CWGSProteinIterator::x_Init(), CWGSFeatureIterator::x_Init(), CWGSSeqIterator::x_Init(), CGff3Writer::x_WriteBioseqHandle(), and CVcfReader::xAssignVariationIds().
◆ GetNCPointer()template<class C , class Locker >
Get pointer,.
Same as GetPointerOrNull().
Definition at line 1174 of file ncbiobj.hpp.
Referenced by CTreeGraphicsModel::AddTempCollapsedNode(), CTSE_ScopeInfo::AddUsedTSE(), CQuery::begin(), CPhyloTreeDataSource::CollapseByDistance(), CPhyloTreeDataSource::ComputeLengthsFromRoot(), CQuery::end(), CPhyloTreeDataSource::Filter(), CPhyloTreeDataSource::FilterDistances(), fta_get_project_user_object(), CPrefetchRequest::GetAction(), CQueryImpl::GetDatabase(), CSeqTextDataSource::GetLoc(), CBlobBookmark::GetOStream(), CWeakObject::GetPtrProxy(), CBamRefSeqInfo::LoadPileupChunk(), CBamRefSeqInfo::LoadSeqChunk(), CWeakRef< CQueue >::Lock(), CWeakIRef< IAlignRow >::Lock(), CWGSSeqIterator::SAmbiguityAccess::operator->(), CPSGL_RequestTracker::QueueInBackground(), CPhyloTreeDataSource::ReRootMidpoint(), s_FindNextParamsSet(), CGlPreviewSetupWidget::SetPreviewSubImage(), CUpdateSeq_Input::SetUpdateBioseq(), CUpdateMultipleSeq_Input::SetUpdateEntry(), CPhyloTreeDataSource::SortDist(), CPhyloTreeDataSource::SortLabel(), CPhyloTreeDataSource::SortLabelRange(), CDiscrepancyVisitorImpl< _Name >::Summarize(), CLocalFileRestorer::x_AttachNewObject(), CGeneModelFeatJob::x_CreateGeneModels(), CPhyloRectCladogram::x_DrawSplineTree(), CPhyloRadial::x_DrawTreeVbo(), CPhyloSlantedCladogram::x_DrawTreeVbo(), CMacroFunction_ParsedText::x_GetSpecialField(), CBamRefSeqInfo::x_InitAlignIterator(), and CUpdateSeqPanel::x_InitAlnMultiDSBuilder().
◆ GetNCPointerOrNull()template<class C , class Locker >
Get pointer value.
Similar to GetNonNullPointer() except that this method returns a null if the pointer is null, whereas GetNonNullPointer() throws a null pointer exception.
Definition at line 1162 of file ncbiobj.hpp.
Referenced by CThreadPool_Impl::CallController(), CMacroEngine::CallFunction(), CMacroResolver::CallFunction(), CDataSource::GetDataLoader(), SAnnotSelector::GetFeatComparator(), CPrefetchRequest::GetListener(), CRef< CAlnMixSegment >::GetNCPointer(), CVDBCacheWithExpiration::CSlot::GetObject(), CPSGL_RequestTracker::GetProcessor(), CPSGL_ResultGuard::GetProcessor(), CGBLoaderParams::GetReaderPtr(), CThreadPool_Impl::GetSafeSleepTime(), CHeapScope::GetScopeOrNull(), CDesktopCanvas::GetSelection(), CIRef< IAlignRow >::operator=(), CInitMutex< SAnnotSetCache >::operator=(), CThreadInPool_ForServer::ProcessRequest(), CNarrowTreeEdgeVboGeom20::Render(), CFillerPointVboGeom20::Render(), CNarrowTreeEdgeVboGeom11::Render(), CFillerPointVboGeom11::Render(), CMacroBioData_FeatIterBase::RunEditCommand(), CMacroBioData_SeqAlignIter::RunEditCommand(), CMacroBioData_SeqSetIter::RunEditCommand(), CGeneModelFeatJob::x_CreateGeneModels(), CSeqTable_sparse_index::x_GetDeltaCache(), CSeqTable_multi_data::x_GetIntDeltaCache(), CTSE_Info::x_GetTopLevelSeq_submit(), and CThreadPool_Impl::x_HasNoThreads().
◆ GetNonNullNCPointer()template<class C , class Locker >
◆ GetNonNullPointer() [1/3]template<class C , class Locker >
Get pointer value and throw a null pointer exception if pointer is null.
Similar to GetPointerOrNull() except that this method throws a null pointer exception if pointer is null, whereas GetPointerOrNull() returns a null value.
Definition at line 968 of file ncbiobj.hpp.
Referenced by BOOST_AUTO_TEST_CASE(), CMagicBlastAppArgs::CMagicBlastAppArgs(), CDbIndex_Factory::do_create_1_2(), CRef< CAlnMixSegment >::GetObject(), CMagicBlastThread::Main(), CRef< CAlnMixSegment >::operator*(), CRef< CAlnMixSegment >::operator->(), CRequestContextGuard_Base::Release(), CDeltaBlast::Run(), CSRSearchApplication::Run(), CDeltaBlastApp::Run(), CMagicBlastApp::Run(), s_UpdateSubjectInSeqalign(), CRequestContextGuard_Base::SetDefaultErrorStatus(), CGumbelParamsOptions::SetScoreMatrix(), CDeltaBlast::x_FindDomainHits(), CMultiAligner::x_FindRPSHits(), CSplignApp::x_GetBl2SeqHits(), CCompartApp::x_GetSeqLength(), CSequenceDataTester::x_TestSingleSequence_Local(), CSequenceDataTester::x_TestSingleSequence_Remote(), and CRequestContextGuard_Base::~CRequestContextGuard_Base().
◆ GetNonNullPointer() [2/3]template<class C , class Locker >
◆ GetNonNullPointer() [3/3]template<class C , class Locker >
Get pointer value and throw a null pointer exception if pointer is null.
Similar to GetPointerOrNull() except that this method throws a null pointer exception if pointer is null, whereas GetPointerOrNull() returns a null value.
Definition at line 1654 of file ncbiobj.hpp.
Referenced by CBuildDatabase::AddSequences(), CSplignFormatter::AsSeqAlignSet(), CEditObjectSeq_desc::CreateWindow(), CSplignTrim::CutFromLeft(), CSplignTrim::CutFromRight(), CEditObjectSeq_desc::GetEditCommand(), CTSE_Lock::GetNonNullPointer(), CConstRef< CSeq_loc >::GetObject(), CTableSelectionBioTreeContainer::GetRows(), CNWFormatter::SSegment::ImproveFromLeft(), CNWFormatter::SSegment::ImproveFromLeft1(), CNWFormatter::SSegment::ImproveFromRight(), CNWFormatter::SSegment::ImproveFromRight1(), CEditObjectSeq_desc::LocationChange(), CGoQualLessThan::operator()(), CConstRef< CSeq_loc >::operator*(), CConstRef< CSeq_loc >::operator->(), CDeltaBlast::Run(), s_MakeBioseqs(), CSplignTrim::Update(), CFeatureGenerator::SImplementation::x_CreateCdsFeature(), CFlatGatherer::x_GatherFeaturesOnWholeLocationIdx(), CPhyTreeView::x_OnSetSelection(), and CSeqAlignFilter::x_UpdateGiInSeqalign().
◆ GetObject() [1/3]template<class C , class Locker >
Get object.
Similar to GetNonNullPointer(), except that this method returns the object whereas GetNonNullPointer() returns a pointer to the object.
Definition at line 1011 of file ncbiobj.hpp.
Referenced by SeqTreeAsnizer::addAsnSeqTreeNode(), CTableAnnotDataSource::AddSeqLoc(), CAdjustForConsensusSpliceSite::AdjustCDS(), CAdjustForConsensusSpliceSite::AdjustCDSEnds(), CAttachedHandles::Attach(), BOOST_AUTO_TEST_CASE(), CTreeQueryExec::CallFunction(), CAppJobDispatcher::CancelJob(), CreateMolInfoDesc(), CMytestApplication::DoProcess(), CCmdChangeProjectItem::Execute(), CTableImportDataSource::ExportTableParms(), CTMS_DisplayTrack_Client::Fetch(), CEditObjectSeq_desc::GetEditCommand(), GetGl(), CPhyloTree::GetGraphicsModel(), CThreadPoolEngine::CThreadTask::GetJob(), CGuiObjectInfoSeq_feat::GetLinks(), CInitMutex< SAnnotSetCache >::GetObject(), CGBProjectHandle::GetProject(), IPhyloTreeRender::GetScheme(), CPhyloTreeWidget::GetScheme(), CHitMatrixDataSource::GetScope(), CSeqTextDataSource::GetScope(), CMytestApplication::GetSeqEntry(), CSeqSetPresenter::GetSeqEntry(), CBioseq_Handle::GetTSE_Handle(), CAuthorNamesContainer::ImportAuthorsFromFile(), CTreeGraphicsModel::Init(), PT::CProjectItem::Initialize(), CPhyloTreeDataSource::IterateOverSelNodes(), CPhyloTreeWidget::OnOpenPropertiesDlg(), CNetScheduleConfigLoader::operator()(), operator<<(), CFuncWithArgs::operator==(), SMacroFuncWithArgs::operator==(), CQueueDataBase::Purge(), CSeqTestApplication::Render(), CRulerPanel::Render(), CAppJobDispatcher::ResumeJob(), CAlignTabExportJob::Run(), CFastaAlignExportJob::Run(), C5ColExportJob::Run(), CAgpExportJob::Run(), CFlatFileExportJob::Run(), CTableImportColumn::SaveAsn(), CGBProjectHandle::SetProject(), CAppJobDispatcher::ShutDown(), CAppJobDispatcher::SuspendJob(), CAdjustForConsensusSpliceSite::x_AlsoAdjustmRNA(), CSGAlignmentJob::x_CreateAlignGlyphsForCrossOriginAlign(), CHitMatrixDataSource::x_CreateIds(), CCreateGeneModelTask::x_GetCommand(), CSNPDataLoader_Impl::x_GetFileInfo(), CMiscSeqTable::x_InterpretColumnProperties(), CSGAlignmentJob::x_LoadAlignmentFeats(), CBatchFeatJob::x_LoadFeatProducts(), CReportEntry::x_MapPos(), CAppJobDispatcher::x_PollEngines(), CTreeGraphicsModel::x_RenderNodeLabelsPdf(), CAdjustForConsensusSpliceSite::x_UpdateLocation(), CFastaOstreamEx::x_WriteTranslatedCds(), CBlockingQueue_ForServer::CCompletingHandle::~CCompletingHandle(), and CBlockingQueue< CRef< CStdRequest > >::CCompletingHandle::~CCompletingHandle().
◆ GetObject() [2/3]template<class C , class Locker >
◆ GetObject() [3/3]template<class C , class Locker >
Get object.
Similar to GetNonNullPointer(), except that this method returns the object whereas GetNonNullPointer() returns a pointer to the object.
Definition at line 1697 of file ncbiobj.hpp.
Referenced by CTableAnnotDataSource::AddSeqLoc(), CAdjustForConsensusSpliceSite::AdjustmRNAandExonEnds(), CAdjustForConsensusSpliceSite::AdjustmRNAandExonFeatures(), CFlatFileTextItem::CFlatFileTextItem(), CUnculturedTool::CorrectBioSource(), CMacroBioData::CreateIterator(), CTableReaderMacro::CreateMacros(), CRelationTypeConverterAdapter::Dump(), Sequence::FillOutSeqId(), CDesktopCitSubItem::GetCitSub(), CDesktopContactInfoItem::GetContactInfo(), CSeq_feat_Descr::GetFeat(), CGuiObjectInfoSeq_feat::GetLinks(), CRelationTypeConverterAdapter::GetName(), CMacroBioData_PubdescIter::CSubmitblockIter::GetOrigSubmitBlock(), CTableDataValidate::GetRowObject(), CDesktopSeqdescItem::GetSeqdesc(), CDesktopSeqSubmitItem::GetSeqSubmit(), CPhyloPhylipReader::GetTree(), CSeqDesktopPanel::Load(), CBLASTToolManager::LoadSettings(), StructureSet::MatchSequenceToMoleculeInObject(), PSSMWrapper::PSSMWrapper(), CFrameworkDemoGUI::RestoreWindowLayout(), CSequenceUpdater::s_UpdateSeqInst(), testResultAlignments(), CMacroFunction_GetSequence::TheFunction(), CSimpleProjectView::x_ActivateTextView(), CLinkUtils::x_AddDbxrefFeatureLinks(), CDesktopDataBuilder::x_CreateSeq(), CDesktopDataBuilder::x_CreateSet(), CMacroFunction_ParsedText::x_GetSpecialField(), CFeatureSearchJob::x_SearchFeatures(), CUnculturedTool::x_TryRankFix(), and CAdjustForConsensusSpliceSite::x_UpdateExonFeatures().
◆ GetPointer() [1/3]template<class C , class Locker >
◆ GetPointer() [2/3]template<class C , class Locker >
Get pointer,.
Same as GetPointerOrNull().
Definition at line 1684 of file ncbiobj.hpp.
Referenced by CChangeUnindexedObjectCommand< T >::AddBioseq(), AddExceptionsToShortIntron(), CClickableSortUniqueCount::AddToBulkEditList(), CClickableSortUniqueCount::AddToListCtrl(), CProjectFileWriter::AddToScope(), CApplyObject::ApplyChange(), CDiscrepancyVisitorImpl< _Name >::Autofix(), CNewCleanup_imp::BasicCleanupBioseqSetHandle(), CNewCleanup_imp::BasicCleanupSeqEntryHandle(), BOOST_AUTO_TEST_CASE(), CSeqGraphicPane::CanSetSwitchPoint(), CTextPanel::CanShowFastA(), CTextPanel::CanShowFlatFile(), CApplyObject::CApplyObject(), CFlatFileTextItem::CFlatFileTextItem(), CBarcodeTool::ClickLink(), CPhyTreeView::CommitTheChanges(), Convert_Bioseq_Seq_entry(), Convert_Seq_id_Bioseq_set(), CPsiBl2Seq::CPsiBl2Seq(), CUpdateMultiSeq_Dlg::CreateControls(), CreateEditorForObject(), CSeq_loc_Mapper::CSeq_loc_Mapper(), CTextPanel::DataLoaded(), CTaxValidationAndCleanup::DoTaxonomyUpdate(), CMAViewManager::DoTransition(), CSequenceEditingEventHandler::Duplicate(), CBioseqEditor::EditSelection(), CCmdChangeSeqdesc::Execute(), CNewCleanup_imp::ExtendedCleanupSeqEntryHandle(), objects::CFixSuspectProductName::FixSuspectProductNames(), CSeqTableColumnInfo::Get(), CProjectedMappingInfo::GetAlignmentDataSource(), CMolInfoField::GetApplyObjects(), GetAuthList(), GetBestBioseqLabel(), CRemoteBlastDbDataLoader::GetBlobs(), GetCDSProductSeq(), CReplaceEntirePubPanel::GetCommand(), CGroupMapWidget::GetCurrentItem(), CDesktopViewContext::GetCurrentSelection(), CConstRefTypeInfo< Data >::GetData(), CMacroDataException::GetDataAsString(), CEditObjectSeq_desc::GetEditCommand(), CEditObjectSubmit_block::GetEditCommand(), CFlatFileViewContext::GetEditObject(), CJobFutureJobBase::GetError(), CGeneGroup::GetHTMLActiveAreas(), CSeq_id_Descr::GetId(), CGroupMapWidget::GetItemLabel(), CTableView::GetMainObject(), CVcfTableView::GetMainObject(), CTableViewWithTextViewNav::GetMainObject(), CMappedFeatOrObject::GetObject(), CPluginObject::GetObject(), CMolInfoField::GetObjects(), CPluginObject::GetProject(), GetPubTitle(), CmRNACDSLinker::GetReferencedmRNA_CDS(), GetReplacementCommand(), CMiscSeqTableColumn::GetReplacementCommand(), CVcfTableSelection::GetRows(), CMacroBioData_FeatIterBase::GetScopedObject(), CMacroBioData_FeatIntervalIter::GetScopedObject(), CVcfTableSelection::GetSelection(), CProjectTreeView::GetSelection(), CStdSegHit::GetSeqAlign(), CDUpdater::getSequencesFromGB(), CProjectTreeView::GetSingleObject(), CFlatFileTextItem::GetToolTipText(), GetTopSeqEntryFromScopedObject(), CCleanupApp::HandleSeqEntry(), CUser_object::HasField(), CAlignGlyph::HasObject(), CClonePlacementGlyph::HasObject(), CFeatGlyph::HasObject(), CSegmentGlyph::HasObject(), CSequenceTrack::HasObject(), CSwitchPointGlyph::HasObject(), CObjectList::Init(), CViewGraphic::InitView(), CVcfTableView::InitView(), CTextPanel::InitWidget(), CBioseqEditor::IsDeletable(), CGuiSeqInfoSeq_id::IsDNA(), CBioseqEditor::IsEditable(), IsEditable(), CCleanup::IsGeneXrefUnnecessary(), CGuiSeqInfoSeq_id::IsProtein(), CComment_rule::IsValid(), CNGAlignParams::LogDump(), CId1FetchApp::LookUpGI(), CCdsToMatPeptide::MergeConvert(), CEditingActionDescLocalId::Modify(), CEditObjectSeq_desc::MolInfoLocationChange(), CMacroBioData_PubdescIter::Next(), CSeqGraphicPane::NextPrevSplice(), CTextPanel::ObjectIsFeature(), CObjectListWidgetSel::OnAddAccessionClick(), CAppJobTask::OnAppJobProgress(), CDesktopViewContext::OnCopySelection(), CDesktopViewContext::OnCutSelection(), CClickableSortUniqueCount::OnListItemActivated(), CAppPackagesDlg::OnPackageSelected(), CDesktopViewContext::OnPasteSelection(), CSearchToolBase::OnProgress(), CSubPrep_panel::OnSaveBtnClick(), CSelectTargetDlg::OnSelTargetAcceptClick(), CPhyTreeView::OnSomethingEdited(), CConvertCache::SCacheKeySort::operator()(), CSeqTableColumnInfo::operator->(), CChangePhyloSelectionSetCmd::PerformEdit(), CChangePhyloPropertyCmd::PerformEdit(), CChangePhyloExpandCollapseCmd::PerformEdit(), CChangePhyloPropertyCmd::PerformFeatureDictEdit(), CBlastFormat::PrintOneResultSet(), CConversionApp::Read(), CFeatureGenerator::SImplementation::RecomputePartialFlags(), CRemoveSet::remove_sets_from_set(), CMacroDataException::ReportExtra(), SRelLoc::Resolve(), CBulkCDS::RowToScopedObjects(), CBulkGene::RowToScopedObjects(), CBulkMiscFeat::RowToScopedObjects(), CBulkRna::RowToScopedObjects(), SrcEditDialog::RowToScopedObjects(), CAsnExportJob::Run(), CAlignTabExportJob::Run(), CFastaAlignExportJob::Run(), C5ColExportJob::Run(), CAgpExportJob::Run(), CFlatFileExportJob::Run(), CFeatureRetrievalJob::Run(), CAppJobDispatcher::RunSync(), s_AreThereOtherCDSForThisProduct(), s_CheckEmptyLists(), s_GetAccession(), s_IsBioseqInSet(), s_LimitDeflines(), CMacroFunction_RemoveQual::s_RemoveFields(), CTextPanel::SaveState(), CTempTrackProxy::SaveToRegistry(), CTextPanelContext::SelectItem(), CFeatureGenerator::SImplementation::SetFeatureExceptions(), CPluginObject::SetObject(), CViewGraphic::SetOrigObject(), CPluginObject::SetProject(), sGetValidateObject(), SOAP_GetKnownObject(), TestFeaturesInRange(), CMacroFunction_SwapQual::TheFunction(), CMacroFunction_SwapRelFeatQual::TheFunction(), CMacroFunction_SetRelFeatQual::TheFunction(), CMacroFunction_AddDBLink::TheFunction(), CMacroFunction_EditRelFeatQual::TheFunction(), CMacroFunction_ConvertStringQual::TheFunction(), CMacroFunction_ConvertFeatQual::TheFunction(), CMacroFunction_ConvertRNARelQual::TheFunction(), CMacroFunction_ParseStringQual::TheFunction(), CMacroFunction_ParseFeatQual::TheFunction(), CMacroFunction_ParseRNARelQual::TheFunction(), CMacroFunction_AddParsedText::TheFunction(), CMacroFunction_AddParsedToFeatQual::TheFunction(), CMacroFunction_ParsedTextFrom::TheFunction(), CMacroFunction_CopyStringQual::TheFunction(), CMacroFunction_CopyFeatQual::TheFunction(), CMacroFunction_CopyRNARelQual::TheFunction(), CMacroFunction_RmvOutsideRelFeatQual::TheFunction(), CMacroFunction_AddorSetContElement::TheFunction(), CMacroFunction_SatelliteFields::TheFunction(), CMacroFunction_MobileElementTypeFields::TheFunction(), CMacroFunction_ApplyStrucVoucherPart::TheFunction(), CMacroFunction_MakeBoldXrefs::TheFunction(), CMacroFunction_Autodef::TheFunction(), CMacroFunction_AutodefId::TheFunction(), CMacroFunction_RefreshDefline::TheFunction(), CMacroFunction_AutodefComplete::TheFunction(), CMacroFunction_CreateProteinFeats::TheFunction(), CMacroFunction_DeltaSeqToRaw::TheFunction(), CMacroFunction_UpdateProteinSeqs::TheFunction(), CMacroFunction_RemoveAllFeatures::TheFunction(), CMacroFunction_ConvertFeature::TheFunction(), CMacroFunction_ApplyCDS::TheFunction(), CMacroFunction_ApplyRNA::TheFunction(), CMacroFunction_ApplyGene::TheFunction(), CMacroFunction_ApplyOtherFeature::TheFunction(), CMacroFunction_ApplyPublication::TheFunction(), CMacroFunction_ISOJTALookup::TheFunction(), CMacroFunction_LookupPub::TheFunction(), CMacroFunction_DOILookupBase::TheFunction(), TrimEntry(), CCmdCreateDesc::Unexecute(), CAsnvalThreadState::ValidateAsync(), CValidError_bioseq::ValidateSeqId(), CSoapMessage::Write(), CFeatureItem::x_AddQualProteinId(), IAuthorEditor::x_ApplyToSeqSubmit(), variation::CHgvsParser::x_AsHgvsInstExpression(), CSeqGraphicPane::x_ChangeSwitchPoint(), CMacroFunction_EditFeatLocation::x_CheckInitFeature(), CFlatGatherer::x_CollectSourceFeatures(), CNGAlignJob::x_CreateProjectItems(), CAlnMultiDSBuilder::x_CreateSparseDataSource(), CAppPackagesDlg::x_DumpPkgInfo(), CTableViewWithTextViewNav::x_EditObject(), CAutogeneratedCleanup::x_FallBackSeqAnnotMethod(), CSGGenBankDS::x_ForegroundJob(), CAlignedFeatureGraph::x_GatherCluster(), CPkgManager::x_GetBasePkgs(), CSeqMap::x_GetChunkToLoad(), CGlyphContainer::x_GetHistMsg(), CSeqMap::x_GetObject(), CAlignSpanView::x_GetOrigObject(), CCrossAlignView::x_GetOrigObject(), CMPCrossAlignView::x_GetOrigObject(), CMultiAlignView::x_GetOrigObject(), CPhyTreeView::x_GetOrigObject(), CSeqTextView::x_GetOrigObject(), CFeatTableView::x_GetOrigObject(), CViewGraphic::x_GetOrigObject(), CFastaTitleItem::x_GetTitle(), CStatusBarService::x_HasEvent(), CCompareWithBiosample::x_LoadData(), CTextPanel::x_LoadFastA(), CTextPanel::x_LoadFlatFile(), CSeqMap::x_LoadObject(), CAppPackagesDlg::x_LoadPkgList(), CConvertFeatureBase::x_MoveFeatureToProtein(), CLayoutTrackHandler::x_MoveTrackDownRecursive(), CLayoutTrackHandler::x_MoveTrackUpRecursive(), CBlastFormat::x_PrintTaxReport(), CTextItemSeq_align::x_RenderText(), CTextItemSeq_feat::x_RenderText(), CValidError_bioseq::x_ReportDupOverlapFeaturePair(), CValidError_bioseq::x_ReportUTRPair(), CTextPanel::x_SaveViewType(), CTextPanel::x_SelectFlatFileSequence(), CMacroFunction_MakeLocation::x_SetCurrentBioseq(), CMacroBioData_BioSourceIter::x_SetDefaultObjectInfo(), CMacroBioData_PubdescIter::x_SetDefaultObjectInfo(), CMacroBioData_SeqdescIter::x_SetDefaultObjectInfo(), CMacroBioData_MolInfoIter::x_SetDefaultObjectInfo(), CMacroFunction_SwapQual::x_SetField(), CSeqDesktopPanel::x_SetMaxExpansionLevel(), CSeqMap::x_SetSegmentRef(), CAgpConverter::x_SetUpObjectOpeningAndClosingStrings(), CDesktopViewContext::x_UpdateCutCopySelection(), CMRNAValidator::x_ValidateCommonMRNAProduct(), CSoapMessage::x_VerifyFaultObj(), and CProjectFileWriter::x_WriteGtf().
◆ GetPointer() [3/3]template<class C , class Locker >
Get pointer,.
Same as GetPointerOrNull().
Definition at line 998 of file ncbiobj.hpp.
Referenced by CEvidencePanel::AddCommand(), CStrandPanel::AddCommand(), CRevIntPanel::AddCommand(), CExtensionRegistry::AddExtensionPoint(), CGroupMapWidget::AddGroup(), CGroupMapWidget::AddItem(), CAnnotationASN1::CImplementationData::AddModel(), CProjectService::AddProjectView(), CPdf::AddShadedTris(), CTrackContainer::AddTracks(), CTrackConfigManager::AlignTrackConfig(), CItem::apply(), CAddSequences::apply(), CConvertRptUnitRangeToLoc::apply(), CRemAllProtTitles::apply(), CRemProtTitles::apply(), CRemoveBankitComment::apply(), CRemoveGenomeProjectsDB::apply(), CRemoveStructuredComment::apply(), CChangeStructuredCommentKeyword::apply(), CRemoveSeqAnnot::apply(), CConvertComment::apply(), CTrimN::apply(), CMRnaForCDS::apply(), CAddFluComments::Apply(), CRemoveUnnecessaryExceptions::apply(), CModifyStructuredComment::apply(), CReorderStructuredComment::apply(), CAddCitSubForUpdate::apply(), CAssignFeatureId::apply(), CClearFeatureId::apply(), CReassignFeatureId::apply(), CUniqifyFeatureId::apply(), CRemoveUnverified::apply(), CLabelRna::apply(), CConvertSelectedGaps::apply_impl(), CRmvCddFeatDbxref::apply_to(), CPrefixAuthority::apply_to(), CSrcFocusSet::apply_to(), CSrcFocusClear::apply_to(), CSetTransgSrcDesc::apply_to(), CApplyObject::ApplyChange(), CSubmissionWizard::ApplySubmitCommand(), CAddCitSubForUpdate::ApplyToCSeq_entry(), Assign3primeUTRSite(), Assign5primeUTRSite(), AssignNtRemoteLocation(), CDiscrepancyContext::AutofixSubmit_block(), CdBlaster::blast(), BOOST_AUTO_TEST_CASE(), CAgpRenumber::CAgpRenumber(), CScoringJob::Calculate(), CScoreCache::CalculateScores(), CAppTaskService::CancelTask(), CApplyObject::CApplyObject(), CEditingActionSummaryConstraint::CEditingActionSummaryConstraint(), CFlatFileTextItem::CFlatFileTextItem(), CVcfTrack::CheckRange(), CBarcodeTool::ClickLink(), CTrackContainer::CloneTrack(), CScopeTransaction_Impl::Commit(), CSubmissionWizard::ConnectListener(), Convert_Bioseq_Seq_entry(), ASNDataManager::ConvertMimeDataToCDD(), CorrectIntervalOrder(), CViewManagerService::CreateClient(), CConvertSetTypeDlg::CreateControls(), CSubmissionWizard::CreateControls(), CSrcModListPanel::CreateControls(), CreateEditingActionConstraint(), CGBDocument::CreateLoadJob(), CreateMimeFromBiostruc(), CAnnotationASN1::CImplementationData::CreateModelProducts(), BLASTer::CreateNewPairwiseAlignmentsByBlast(), CGBDocument::CreateProjectScope(), CSequenceEditingEventHandler::CreateSeqSubmit(), CUIToolRegistry::CreateToolInstance(), CTrackConfigManager::CreateTrackConfig(), CBinsTrackFactory::CreateTracks(), CHapmapTrackFactory::CreateTracks(), CLDBlockTrackFactory::CreateTracks(), CSnpTrackFactory::CreateTracks(), CAggregateFeatureTrackFactory::CreateTracks(), CAllOtherFeaturesTrackFactory::CreateTracks(), CComponentTrackFactory::CreateTracks(), CVarTrackFactory::CreateTracks(), CEpigenomicsTrackFactory::CreateTracks(), CFeatureTrackFactory::CreateTracks(), CGraphOverlayFactory::CreateTracks(), CGraphTrackFactory::CreateTracks(), CScaffoldTrackFactory::CreateTracks(), CSegmentMapTrackFactory::CreateTracks(), CSeqTableGraphTrackFactory::CreateTracks(), CSequenceTrackFactory::CreateTracks(), CSixFramesTransTrackFactory::CreateTracks(), CTraceGraphTrackFactory::CreateTracks(), CTrackContainerFactory::CreateTracks(), CAlignmentTrackFactory::CreateTracks(), CGeneModelFactory::CreateTracks(), CVcfTrackFactory::CreateTracks(), CSimpleProjectView::CreateView(), CEditObjectSeq_desc::CreateWindow(), CEditObjectSeq_feat::CreateWindowImpl(), CRenderCommon::CRenderCommon(), CSameConstraintMatcher::CSameConstraintMatcher(), CScoringJob::CScoringJob(), CRawSeqToDeltaByN::DeltaSeqToRaw(), CSubmissionWizard::DisconnectListener(), CSimpleB2SWrapper::DoBlast2Seqs(), CFileLoadManager::DoTransition(), CGraphOverlay::Drop(), CBioseqEditor::EditSelection(), CEditingBtnsPanel::EditSequence(), CSequenceEditingEventHandler::EditSequence(), C5ColObjectLoader::Execute(), CAgpObjectLoader::Execute(), CGBFlatFileObjectLoader::Execute(), CGffObjectLoader::Execute(), CRMObjectLoader::Execute(), CAppDialogs::ExportDialog(), IEditingActionBiosource::Find(), IEditingActionDesc::Find(), CEditingActionDescUserObject::Find(), CDiscrepancyPanel::FindGraphicalSequenceView(), IEditingActionDesc::FindRelated(), CEditingActionDescUserObject::FindRelated(), CDockLayoutTree::FromUserObject(), CDockLayoutTree::CNode::FromUserObject(), fta_build_ena_user_object(), CProjectStorage::GetAnnots(), CMolInfoField::GetApplyObjects(), CProductColumn::GetApplyObjects(), CFieldHandler::GetApplyObjectsFromRelatedObjects(), CObjectTextItem::GetAssosiatedScope(), CConversionOption::GetBool(), CSeqGraphicConfig::GetClonePlacementParams(), CPhyloTree::GetColorTable(), CTreeGraphicsModel::GetColorTable(), CConvertCdsToMiscFeat::GetCommand(), CBulkCDS::GetCommandFromValuesTable(), CSeqGraphicConfig::GetCommentConfig(), CSeqGraphicPane::GetCurrentObject(), CSeqGraphicConfig::GetCustomFeatColors(), COrgRefCache::SCacheEntry::GetData(), CRefTypeInfo< Data >::GetData(), CBinsTrack::GetDataSource(), CHapmapTrack::GetDataSource(), CLDBlockTrack::GetDataSource(), CSnpTrack::GetDataSource(), CHistogramGraph::GetDataSource(), CEpigenomicsTrack::GetDataSource(), CFeatureTrack::GetDataSource(), CGraphTrack::GetDataSource(), CSegmentMapTrack::GetDataSource(), CSequenceTrack::GetDataSource(), CTraceGraphTrack::GetDataSource(), CTrackContainer::GetDataSource(), CSeqTextPanel::GetDataSource(), CAlignmentTrack::GetDataSource(), CGeneModelTrack::GetDataSource(), CSixFramesTransTrack::GetDataSource(), CSeqGraphicPane::GetDataSource(), CSGDataSourceContext::GetDS(), CEditObjectFeaturePropagate::GetEditCommand(), CEditObjectSeq_desc::GetEditCommand(), CEditObjectSeq_feat::GetEditCommand(), CEditObjectSet::GetEditCommand(), CEditObjectSubmit_block::GetEditCommand(), GetEditSaver(), CSearchJobBase::GetError(), CNetBlastSubmittingJob::GetError(), CNetBlastMonitoringJob::GetError(), CDownloadJob::GetError(), CJobAdapterJob< TInput, TOutput >::GetError(), CBuildAlnVecJob::GetError(), CBuildSparseAlnJob::GetError(), CFeatureLoadingJob::GetError(), CScoringJob::GetError(), CTableDataSUCJob::GetError(), CTableDataValidateJob::GetError(), CTextRetrieveJob::GetError(), CSeqGraphicJob::GetError(), CSeqTextJob::GetError(), CAttachProjectItemsJob::GetError(), CResetScopeHistoryJob::GetError(), CTableDataVcfJob::GetError(), CFeatCompareJob::GetError(), CFeatureRetrievalJob::GetError(), CFlatFileSequenceListJob::GetError(), CTrackInitializationJob::GetError(), CAnnotMetaDataJob::GetError(), CGetAssembliesJob::GetError(), CAppJob::GetError(), GetExtensionAsInterface(), CGeneFinder::GetFeatViaSubsetThenExtremesIfPossible_Helper(), impl::CDBHandlerStack::CUserHandlerWrapper::GetHandler(), CHeapScope::GetImpl(), CUIToolRegistry::GetInstance(), CAppJobDispatcher::GetJobError(), CAppJobDispatcher::GetJobResult(), CHitMatrixDataSource::GetLabel(), CGuiObjectInfoVariant::GetLinks(), SNetCacheAPIImpl::GetListener(), CProjectView::GetMainObject(), CTableView::GetMainObject(), CVcfTableView::GetMainObject(), CTableViewWithTextViewNav::GetMainObject(), CAnnotMapping_Info::GetMappedSeq_align(), CLBLASTUIDataSource::GetMenu(), CNetBLASTUIDataSource::GetMenu(), CBamUIDataSource::GetMenu(), CGenBankUIDataSource::GetMenu(), CPhyloCircularCladogram::GetNodeLabelDist(), IPhyloTreeRender::GetNodeLabelDist(), CViewGraphic::GetNonAsnData(), CProjectStorage::GetObject(), CAbstractProjectItem::GetObject(), CObjectListTableModel::GetObjectList(), CTableDataBioTreeContainer::GetObjectValue(), CTableDataSeq_table::GetObjectValue(), CInitMutex< SAnnotSetCache >::GetPointer(), CSeqTextJob::GetProgress(), CTableDataVcfJob::GetProgress(), CFeatCompareJob::GetProgress(), CFeatureRetrievalJob::GetProgress(), CProjectStorage::GetProject(), CEditAppJob::GetProjectService(), CProjectView::GetReflectionInfo(), GetRelatedFeatureApplyObjects(), CFeatureSeqTableColumnBase::GetRelatedGeneApplyObjects(), GetReplacementCommand(), CMiscSeqTableColumn::GetReplacementCommand(), CSearchJobBase::GetResult(), CBuildAlnVecJob::GetResult(), CBuildSparseAlnJob::GetResult(), CFeatureLoadingJob::GetResult(), CScoringJob::GetResult(), CTextRetrieveJob::GetResult(), CSeqTextJob::GetResult(), CAttachProjectItemsJob::GetResult(), CFeatCompareJob::GetResult(), CFeatureRetrievalJob::GetResult(), CFlatFileSequenceListJob::GetResult(), CTrackInitializationJob::GetResult(), CAnnotMetaDataJob::GetResult(), CGetAssembliesJob::GetResult(), CGBProject::GetScope(), CSelectionVisitor::GetScope(), CGBProjectHandle::GetScope(), COpenViewDlg::GetSelectedFactory(), CMultiAlignView::GetSelection(), CProjectTreeView::GetSelection(), CPhyTreeView::GetSelection(), CMultiReader::GetSeqEntry(), IServiceLocator::GetServiceByType(), CGBProjectHandle::GetShortTitle(), CProjectTreeView::GetSingleObject(), CAdvancedAlignCleanup::GetSplignCompartments(), CConversionOption::GetString(), GetStructureFromCacheFolder(), GetStructureViaHTTPAndAddToCache(), CSUCDataGenerator::GetSUCResults(), IPhyloTreeRender::GetTexture(), CGBProjectHandle::GetTitle(), CAlignGlyph::GetTooltip(), CClonePlacementGlyph::GetTooltip(), CFeatGlyph::GetTooltip(), CGuiObjectInfoClone::GetToolTip(), CGuiObjectInfoImpFeature::GetToolTip(), CGuiObjectInfoRegionFeature::GetToolTip(), CGuiObjectInfoSeqFeature::GetToolTip(), CGuiObjectInfoSiteFeature::GetToolTip(), CGuiObjectInfoPrimer::GetToolTip(), CGuiObjectInfoVariant::GetToolTip(), CGuiObjectInfoVariation::GetToolTip(), CTempTrackProxy::GetTrack(), CProjectItem::GetUserObject(), CQueryParseNode::GetUserObject(), CBulkCDS::GetValuesTableFromSeqEntry(), CCleanupApp::HandleSeqEntry(), CSwitchPointGlyph::HasObject(), CProjectService::HasWorkspace(), CPsgCgiApp::Help(), UpdateViewer::ImportStructure(), CNcbiRegistry::IncludeNcbircIfAllowed(), CScoreMethodsDlg::Init(), CPhyloTreeDataSource::Init(), CObjectList::Init(), CSparseMultiDataSource::Init(), CSGAlignmentDS::InitAlignScoreCache(), CSeqGraphicPane::InitDataSource(), COpenDlg::InitDialog(), CViewGraphic::InitView(), CVcfTableView::InitView(), CObjectList::_CColumn::IntVector(), CPhrap_Sequence::IsContig(), CAlnVecMultiDataSource::IsEmpty(), CPhrap_Sequence::IsRead(), CSequenceEditingEventHandler::ItemAction(), LaunchBioseqEditor(), CmRNACDSLinker::LinkSelectedFeatures(), CGBProjectHandle::Load(), CMetaRegistry::Load(), CCompoundRWRegistry::LoadBaseRegistries(), CNcbiApplicationAPI::LoadConfig(), CValidatePanel::LoadData(), LoadDataOnly(), LoadFileForSubmission(), CTempTrackProxy::LoadFromRegistry(), CAsnObjectLoader::LoadFromStream(), CFileLoadManager::LoadRegisteredManagers(), CFileLoadManager::LoadSettings(), CEditObjectSeq_desc::LocationChange(), CPhyloTreeDataSource::MeasureTree(), CTrackConfigManager::MergeTrackConfig(), CDUpdater::modifySeqAlignSeqEntry(), CEditObjectSeq_desc::MolInfoLocationChange(), CGraphOverlay::MoveTrackOut(), CDDAnnotateDialog::NewAnnotation(), CDDAnnotateDialog::NewEvidence(), RpsTestFixture::NuclSearch(), CHitMatrixDemoDlg::OnAccClick(), CFlatFileDemoDlg::OnAccClick(), CSeqGraphicDemoDlg::OnAccClick(), CObjectListWidgetSel::OnAddAccessionClick(), CSubPrep_panel::OnAddSequenceBtnClick(), CAlnVecMultiDataSource::OnAppJobNotification(), CSparseMultiDataSource::OnAppJobNotification(), CRunToolDlg::OnButtonClick(), CSelectFeatureDlg::OnButtonSaveFile(), CCrossAlnWidget::OnChooseSeq(), CHitMatrixWidget::OnChooseSeq(), CDDBookRefDialog::OnClick(), CPhyloTreeWidget::OnCollapseToViewport(), CHitMatrixWidget::OnColorByScore(), CPhyTreeView::OnCreateSelectedSubtree(), CHitMatrixWidget::OnDisableColoring(), CStructuredCommentPanel::OnExport(), CSubmitBlockDlg::OnExportBtnClick(), CSelectFeatureDlg::OnFeatureEdit(), CHitMatrixDemoDlg::OnFileClick(), CSubmitBlockDlg::OnImportBtnClick(), CCDSTranslationPanel::OnImportCdsProteinHyperlinkClicked(), COrganismInfoPanel::OnImportSrcTable(), CTblEditDlg::OnImportTableClick(), CTableDataVcf::OnJobNotification(), CAppJobEventTranslator::OnJobStateChanged(), CLayoutTrackHandler::OnLeftDown(), CSeqGraphicPane::OnLeftDown(), CSeqGraphicPane::OnLeftUp(), CSelectFeatureDlg::OnLoadAccession(), CFlatFileDemoDlg::OnLoadFileClick(), SrcEditDialog::OnLoadqualsClick(), CSeqGraphicPane::OnMotion(), CAlnVecRow::OnMouseEvent(), CPhyloTreeWidget::OnOpenPropertiesDlg(), CSearchToolBase::OnProgress(), CScoringMethodsDlg::OnPropertiesClick(), CEditingBtnsPanel::OnReverseAuthorNamesClick(), CSubPrep_panel::OnSaveBtnClick(), CSelectTargetDlg::OnSelTargetAcceptClick(), CPhyloTreeWidget::OnSetTreeLabel(), CTrackContainer::OnToggleTrack(), COpenViewDlg::OnViewSelected(), CHugeFileProcess::OpenReader(), SFeatureByName::operator()(), impl::CDBHandlerStack::CUserHandlerWrapper::operator==(), CAgpConverter::OutputBioseqs(), CSearch< LEGACY, NHITS >::PepCharge(), CHitMatrixSeqGraph::PreferredSize(), CSequenceEditingEventHandler::PrepareSeqSubmit(), CTbl2AsnApp::ProcessAlignmentFile(), CHugeFileProcess::Read(), CLocalFileRestorer::ReadObjectFromFile(), CPhrap_Contig::ReadReadLocation(), CMetaRegistry::SEntry::Reload(), CCompoundRWRegistry::Remove(), CNCBINode::RemoveChild(), CHitMatrixSeqGraph::Render(), CTreeGraphicsModel::RenderPDF(), CFileLoadManager::ResetState(), CQueryParseNode::ResetUserObject(), CScopeTransaction_Impl::RollBack(), CDataLoadingAppTask::Run(), CObjectLoadingTask::Run(), CEditAppTask::Run(), CFeatureLoadingJob::Run(), CIgBlastnApp::Run(), CTableDataVcfJob::Run(), CBlastKmerSearch::Run(), CAgpconvertApplication::Run(), CObjConvProfile::Run(), CAsn2Asn::RunAsn2Asn(), CAppJobDispatcher::RunSync(), s_CollapseProjectFolder(), CSplign::s_ComputeStats(), s_GetGeneticCode(), s_GetProtApplyObjectsFeatures(), s_GetTaxIDList(), s_OOFBlastHSP2SeqAlign(), s_SetBioSourceField(), s_SetFeatField(), s_TestResultAlignment(), StructureSet::SaveASNData(), CFileLoadManager::SaveSettings(), CSearch< LEGACY, NHITS >::Search(), CConversionOption::SetBool(), CSingleCDSExceptionPanel::SetCodeBreak(), CAlnMultiModel::SetCurrentMethod(), CFeatTableWidget::SetDataSource(), CSeq_loc::SetId(), CFeaturePanel::SetInputObject(), CSeqGraphicRenderer::SetInputObject(), CGraphTrack::SetLayout(), CObjectListWidgetSel::SetObjects(), COpenDlg::SetRegistryPath(), CRunToolDlg::SetRegistryPath(), CFileLoadManager::SetRegistryPath(), CDiagContextThreadData::SetRequestContext(), CSearch< LEGACY, NHITS >::SetResult(), CGBProject::SetScope(), CGBProjectHandle::SetScope(), CGeneGroup::SetShowGene(), CConversionOption::SetString(), CTrackConfigManager::SetTrackConfig(), CViewManagerService::ShowSingletonView(), CPhyloTreeDataSource::Sort(), CFeatGapInfo::Split(), CEditingBtnsPanel::TableReader(), CSequenceEditingEventHandler::TableReader(), CSequenceEditingEventHandler::TableReaderClipboard(), CEditingBtnsPanel::TableReaderFromClipboard(), CTreeCollisionModel2D::TestForNode(), CMacroFunction_ConvertRNARelQual::TheFunction(), CMacroFunction_ParseRNARelQual::TheFunction(), CMacroFunction_ParsedTextFrom::TheFunction(), CMacroFunction_CopyRNARelQual::TheFunction(), CMacroFunction_FixFormat::TheFunction(), CMacroFunction_LookupPub::TheFunction(), CMacroFunction_DOILookupBase::TheFunction(), CFeatGapInfo::Trim(), CSeqGraphicPane::TTHH_GetTooltip(), CSDBAPI::UpdateMirror(), CPhyloTreeDataSource::UpdateSelectionSets(), CBlastDB_FastaFormatter::Write(), CPageHandler::WritePages(), CAlignmentTrack::x_AddAlignmentLayout(), CAlignmentTrack::x_AddAlignStatLayout(), IPhyloTreeRender::x_AddCollapsedGeomNode(), IPhyloTreeRender::x_AddCollapsedTextureNode(), CPhrapReader::x_AddContig(), CFeatureTrack::x_AddFeaturesLayout(), CAppJobDispatcher::x_AddJobRecord(), CPhrapReader::x_AddRead(), CSnpTrack::x_AddSnpsLayout(), CSixFramesTransTrack::x_AddTranslations(), CFeatureTrack::x_AdjustFeatureLayout(), CMakeClusterDBApp::x_BuildDatabase(), CBlastFormatterApp::x_BuildQueryFromPssm(), CBlastFormatterVdbApp::x_BuildQueryFromPssm(), CBlastPrelimSearch::x_BuildStdSegList(), CSGCalcFeatHistJob::x_CalcFeatHistRecursive(), CTreeGraphicsModel::x_CircularLabelMinRotate(), CTreeGraphicsModel::x_CircularLabelTrim(), CGBankLoadingJob::x_Convert(), CSplitDblinkQuals::x_ConvertStrsToStrs(), CIgBlastnApp::x_CountUserBatches(), CAlnMultiDSBuilder::x_CreateAlnVecDataSource(), CSGFeatureJob::x_CreateCrossOriginGlyphs(), CAutodefToolManager::x_CreateEditJob(), CSGFeatureJob::x_CreateFeatSmear(), CSGFeatureJob::x_CreateFeature1(), CSGAlignmentJob::x_CreateGeneModels(), CSGAnnotJob::x_CreateHistFromGraph(), CBLAST_DB_Dialog::x_CreateItems(), CSeqGraphicWidget::x_CreatePopupMenu(), CGBankLoadingJob::x_CreateProjectItems(), CBLASTSeqToolJob::x_CreateProjectItems(), CMSAToolJob::x_CreateProjectItems(), CPhyloTreeJob::x_CreateProjectItems(), CBamLoadingJob::x_CreateProjectItems(), CSrcEditJob::x_CreateProjectItems(), CFeatureGenerator::SImplementation::x_CreateProteinBioseq(), CAlnMultiModel::x_CreateRow(), CVcfLoadingJob::x_CreateSeqIdProjectItem(), CNgAlignApp::x_CreateSequenceSet(), CRunToolDlg::x_CreateToolItems(), CGeneModelFactory::x_CreateTracksWithFilters(), CBioseqEditor::x_DeleteObject(), CProjectViewBase::x_DetachFromProject(), CImportFeatTable::x_DoImportFeaturesFromClipboard(), CImportFeatTable::x_DoImportFeaturesFromFile(), CSNPSearchJob::x_DoSearch(), CEntrezSearchJob::x_DoSearch(), CVcfSearchJob::x_DoSearch(), COpenDlg::x_DoTransition(), CNamedGroup::x_Draw(), CLDBlockLine::x_DrawLabel(), CSGAlignStatJob::x_Execute(), CAppTaskService::x_ExecuteNextTaskInQueue(), CQueryParsePanel::x_ExecuteQuery(), CTableDataValidateJob::x_FetchAll(), CValidatePanel::x_FindGraphicalSequenceView(), CMacroFunction_ISOJTALookup::x_FindIsoJtaTitle(), CGencollIdMapper::x_FixImperfectId(), CSGAlignmentJob::x_GetAlignments(), CAlnVecRow::x_GetAlignmentTooltip(), CSGAlignmentJob::x_GetAlignSmear(), CPdf::x_GetAlphaGraphicsState(), CCreateGeneModelTask::x_GetCommand(), CBioseqEditor::x_GetDeleteCommand(), CGuiObjectInfoSeq_feat::x_GetFeatureToolTip(), CGuiObjectInfoSeq_feat::x_GetGroupToolTip(), CTSE_LoadLock::x_GetGuard(), CBlastHitMatrix::x_GetLabels(), CGuiObjectInfoSeq_feat::x_GetLocLengthRow(), CObjectIndex::x_GetMatches(), CSequenceUpdater::x_GetNewAlign_Replace(), CSeqVector::x_GetPacked2naSeqData(), CProjectViewBase::x_GetScope(), CBLAST_DB_Dialog::x_GetSelectedDBItem(), CMultiAlignView::x_GetSeqRangeSelection(), CComponentSearchForm::x_GetTool(), CCpgSearchForm::x_GetTool(), CFeatureSearchForm::x_GetTool(), COrfSearchForm::x_GetTool(), CSequenceSearchForm::x_GetTool(), CVcfSearchForm::x_GetTool(), CNetBLAST_DMSearchForm::x_GetTool(), CSNPSearchForm::x_GetTool(), CEntrezSearchForm::x_GetTool(), CAlignedFeatureGraph::x_GetTooltip(), CFeatureGenerator::SImplementation::x_HandleCdsExceptions(), CFeatureGenerator::SImplementation::x_HandleRnaExceptions(), CNetScheduleHandler::x_HandleSocketErrorOnResponse(), CAlnVecRow::x_HitTest(), CNcbiApplicationAPI::x_HonorStandardSettings(), CNcbiRegistry::x_Init(), CBlastDBCmdApp::x_InitBlastDB_TaxIdList(), CUIDataSourceService::x_InitDefaultDataSources(), CGeneModelTrack::x_InitFeature_Recursive(), CSearchDatabase::x_InitializeDb(), CUIDataSourceService::x_InitLoadManagers(), CSGAlignmentDS::x_InitScoringMethods(), CDotMatrixView::x_InitWidget(), CAlnVecMultiDataSource::x_IsJobRunning(), CSparseMultiDataSource::x_IsJobRunning(), CScoreCache::x_IsJobRunning(), CSGAlignmentDS::x_IsScoringJobRunning(), CBatchFeatJob::x_LoadFeatProducts(), CSelectFeatureDlg::x_LoadFeatures(), CLDBlockJob::x_LoadFtable(), COpenDlg::x_LoadSettings(), COpenViewDlg::x_LoadSettings(), CRunToolDlg::x_LoadSettings(), CDBConnectionFactory::x_LogConnection(), CFeatureGenerator::SImplementation::x_MapFeature(), CSGSegmentMapJob::x_MergeSeqSegments(), CLayoutTrackHandler::x_MoveTrackDownRecursive(), CLayoutTrackHandler::x_MoveTrackUpRecursive(), CFeatureGraph::x_OnJobCompleted(), CGraphTrack::x_OnJobCompleted(), CSearchToolBase::x_OnJobCompleted(), CScoreCache::x_OnJobCompleted(), CAlignmentTrack::x_OnLayoutPolicyChanged(), CIntronTrack::x_OnLayoutPolicyChanged(), CPhyTreeView::x_OnSetSelection(), CGraphTrack::x_OnSettingsIconClicked(), CAppTaskService::x_OnTaskCanceled(), CGroupMapWidget::x_OnToggleGroup(), CRunToolDlg::x_OnToolSelected(), CAppTaskService::x_OnWakeUpSignal(), CVcfTrack::x_ParseSettings(), CCrossAlignView::x_PostAttachToProject(), CBinsJob::x_PreFetchFtable(), CAlnMultiCGIApplication::x_PreProcess(), CBlastHitMatrix::x_PreProcess(), CBlastFormat::x_PrintStructuredReport(), CGenBankLoadOptionPanel::x_ProccessText(), CBinsTrack::x_ProcessBinsJobResult(), CSGFeatureJob::x_ProcessCachedBigBed(), CSGFeatureJob::x_ProcessCachedVcfTabix(), CXcompareAnnotsApplication::x_ProcessMappingRanges(), CNetScheduleHandler::x_ProcessMsgQueue(), CNetScheduleHandler::x_ProcessMsgRequest(), CNetScheduleHandler::x_ProcessQueueInfo(), CNetScheduleHandler::x_ProcessSetQueue(), CNcbiRegistry::x_Read(), CAgpConverter::x_ReadAgpEntries(), CPhrapReader::x_ReadRead(), CFeatureTrack::x_RegroupFeats(), CAppJobDispatcher::x_RemoveJobRecord(), IPhyloTreeRender::x_RenderNodeHighlight(), CTreeGraphicsModel::x_RenderNodes(), CTreeGraphicsModel::x_RenderNodesPdf(), IPhyloTreeRender::x_RenderSelection(), CSequenceTrack::x_RenderSequence(), CMacroFunction_EditFeatLocation::x_RetranslateCDS(), COpenDlg::x_SaveSettings(), CRunToolDlg::x_SaveSettings(), CHitMatrixRenderer::x_SetGraphs(), CAlnMultiWidget::x_SetScoringMethod(), CSubmissionWizard::x_SetupCmdProcessor(), CSplitDblinkQuals::x_SplitQuals(), CLayoutTrackHandler::x_StartMoving(), CAttribTableColumnIdPanel::x_TableReaderCommon(), CLinkedFeatsGroup::x_UpdateBoundingBox(), CGraphOverlay::x_UpdateBoundingBox(), CProjectViewBase::x_UpdateContentLabel(), CSnpTrack::x_UpdateData(), CAlignmentTrack::x_UpdateData(), CGraphOverlay::x_UpdateLegend(), CHistogramGlyph::x_UpdateLegend(), CPageHandler::x_UpdatePageTreeRoot(), CDockContainer::x_Visible_ReplaceChildWithContainer(), seqsubmit_split::CSeqSubSplitter::xTryProcessSeqEntry(), and seqsubmit_split::CSeqSubSplitter::xTryProcessSeqSubmit().
◆ GetPointerOrNull() [1/3]template<class C , class Locker >
◆ GetPointerOrNull() [2/3]template<class C , class Locker >
Get pointer value.
Similar to GetNonNullPointer() except that this method returns a null if the pointer is null, whereas GetNonNullPointer() throws a null pointer exception.
Definition at line 1672 of file ncbiobj.hpp.
Referenced by CFlatFileFactoryBuilder::AddItem(), CFlatFileSequenceListJob::CFlatFileSeqBuilder::AddItem(), COMSSASearch::AppendBioseq(), CSourceModParser::ApplyAllMods(), CReverseAuthorNames::ApplyToPubdesc(), CFlatFileLocusItem::CalcSize(), CFeatureTableReader_Imp::SFeatAndLineNum::Compare(), CSeq_loc_Mapper::CSeq_loc_Mapper(), CDiscrepancyContext::FindObject(), CFastaTitleItem::GetAssosiatedObject(), CFlatFileLocusItem::GetBioseqHandle(), CPSGDataLoader::GetBlobId(), CEditObjectSeq_desc::GetEditCommand(), CFlatFileTextItem::GetFlatItem(), CSeq_id_Handle::GetHash(), CDesktopBioseqItem::GetObject(), CDesktopBioseqsetItem::GetObject(), CDesktopSeqSubmitItem::GetObject(), CDesktopContactInfoItem::GetObject(), CDesktopCitSubItem::GetObject(), CDesktopSeqdescItem::GetObject(), CDesktopAnnotItem::GetObject(), CDesktopFeatItem::GetObject(), CDesktopAlignItem::GetObject(), CDesktopGraphItem::GetObject(), CTextPanel::GetOrigObject(), CSeqDesktopPanel::GetOrigObject(), CConstRef< CSeq_loc >::GetPointer(), CTSE_Lock::GetPointerOrNull(), CDesktopViewContext::GetSavedObject(), CValidError::GetValidated(), CMacroBioData_SeqSetIter::IsBegin(), CMacroBioData_TSEntryIter::IsBegin(), CFlatFileLocusItem::OnHyperlinkClick(), CConstRef< CSeq_loc >::operator TObjectType *(), CConstIRef< IEventRecord >::operator=(), SConstScopedObject::operator==(), CHugeFileDemoApp::ProcessHugeSeqEntry(), NSearchFeatPanel::CTrackFeatSubtype::Track(), CRangeWithFuzz::x_AddFuzz(), CTableFieldHandle_Base::x_FindColumn(), CHugeFileDemoApp::x_ProcessFileTraditionally(), CFeaturePanel::x_StartAssemblyJob(), and CFeatureTableReader::xAddProteinToSeqEntry().
◆ GetPointerOrNull() [3/3]template<class C , class Locker >
Get pointer value.
Similar to GetNonNullPointer() except that this method returns a null if the pointer is null, whereas GetNonNullPointer() throws a null pointer exception.
Definition at line 986 of file ncbiobj.hpp.
Referenced by BOOST_AUTO_TEST_CASE(), CSeq_loc_Conversion_Set::Convert(), CSeq_loc_Conversion::Convert(), CreateMolInfoDesc(), CPhyTreeView::CreateViewWindow(), CSeqDB::CSeqDB(), CCmdFactory::DeleteGeneXRefs(), CEventHandler::CPostQueue::ExecuteFirstRequest(), CSubjectMap_Factory_Base::extractSeqVector(), ExtractSeqVector(), SNetServerImpl::Get(), CSeq_loc_Mapper_Message::GetAlign(), CFastaSeqBlockItem::GetAssosiatedObject(), CPhyExportParams::GetBioTree(), CAlnMultiModel::GetConsensusRow(), CFileAutoLoader::GetCurrentManager(), CSGDataSourceContext::GetDS(), CEditObjectSeq_desc::GetEditCommand(), CArgDescMandatory::GetErrorHandler(), CSeq_loc_Mapper_Message::GetFeat(), CSeq_loc_Mapper_Message::GetGraph(), CAnnotMapping_Info::GetGraphRanges(), CConnection::GetHandler(), CLBLASTObjectLoader::GetLoader(), CSeq_loc_Mapper_Message::GetLoc(), CAnnotMapping_Info::GetMappedSeq_align(), CBlobSplitterImpl::GetMaster(), CAlnMultiModel::GetMasterRow(), CTextPanel::GetMenuContributor(), CTempTrackProxy::GetNAdata(), CPSGL_Blob_Processor::GetNextLoadedChunk(), CMacroEngine::GetOrCreateRTVar(), CMacroResolver::GetOrCreateRTVar(), CRef< CAlnMixSegment >::GetPointer(), CInitMutex< SAnnotSetCache >::GetPointerOrNull(), CQueryParsePanel::CQueryJob::GetQueryExec(), CTextPanel::GetScope(), CTextPanelContext::GetScope(), CCIGAR_Formatter::GetScope(), CTextPanelContext::GetSelectedObjects(), CTSE_Info::GetTopLevelObjectPtr(), CPhyloTreeDataSource::GetTree(), CDockContainerDescr::GetTree(), CTreeGraphicsModel::Init(), CLayoutGroup::IsMaster(), CBioseq_Handle::IsRemoved(), impl::CDriverContext::MakeConnection(), CTraversalNode::Merge(), COrganismInfoPanel::OnImportSrcTable(), CEditMacroDlg::OnRunClick(), CSelectionPanel::OnSelServiceStateChange(), CPhyloForce::OnTimer(), CSequenceIStream::CSeqData::operator bool(), CRef< CAlnMixSegment >::operator const TObjectType *(), CRef< CAlnMixSegment >::operator TObjectType *(), job_future< void >::operator()(), CSrvRef< SNCBlobVerData >::operator*(), CSrvRef< SNCBlobVerData >::operator->(), CConstIRef< IEventRecord >::operator=(), SConstScopedObject::operator==(), CFeatureTableReader::ReadProtein(), CCmdFactory::RemoveCitations(), CPhyloForce::Render(), IPhyloTreeRender::RenderPdf(), CAlnMrgApp::Run(), CMixedStrands::s_Blast2NASeq(), s_RunBlast2AASeq(), CBlastSearchTask::SetLoadingOptions(), CSeqGraphicPane::SetNonAsnInput(), CEditingBtnsPanel::TableReader(), CSequenceEditingEventHandler::TableReader(), CPSGL_Blob_Processor::TSE_ToOM(), CSelectionVisitor::UpdateSelection(), PT::CProject::UpdateViewLabel(), PT::CRoot::UpdateViewLabel(), CArgDescriptions::x_AddDesc(), CTrackContainer::x_ConvertToContainer(), CSNPDbFeatIterator::SCreateCache::x_GetCommonAllele(), x_GetPrivate(), impl::CConnection::x_GetUserData(), CMQueryFunctionOps::x_InitReferences(), CPdfGrabber::x_InitRenderer(), CSVGGrabber::x_InitRenderer(), CQueryParsePanel::x_IsValidQuery(), CPhyloForce::x_Layout(), CTaxIdHelper::x_OnJobNotification(), CSequinDesktopView::x_OnSingleMouseClick(), CSeqGraphicPane::x_Render(), CSelectionPanel::x_ResetSelObjects(), CSelectionPanel::x_ResetTargetChoice(), IEditMacroFunction::x_SetUserObjects(), and CQueryParsePanel::x_StartQueryJob().
◆ GetPtrProxy() [1/3]Get proxy storage for pointer to object.
Definition at line 2557 of file ncbiobj.hpp.
◆ GetPtrProxy() [2/3]template<class Interface >
Get proxy storage for pointer to object.
Definition at line 2592 of file ncbiobj.hpp.
◆ GetPtrProxy() [3/3] ◆ InitCounter() void CObject::InitCounter ( void ) inlineprivateInitialize counter.
Definition at line 646 of file ncbiobj.cpp.
References eInitCounterInHeap, eInitCounterInPool, eInitCounterNotInHeap, eMagicCounterNew, eMagicCounterPoolNew, ERR_POST_X, i, CObject::m_Counter, ObjFatal, STACK_THRESHOLD, and sx_PopLastNewPtr().
Referenced by CObject::CObject().
◆ InvalidObject() void CObject::InvalidObject ( void ) const privateReport object is invalid.
Example: Attempt to use a deleted object.
◆ IsAllocatedInPool() bool CObject::IsAllocatedInPool ( void ) const inlineCheck if object is allocated in memory pool (not system heap)
Definition at line 461 of file ncbiobj.hpp.
Referenced by CSeqEdit_Cmd_ReplaceAnnot_Base::C_Data::C_Align::C_Align(), CTMgr_GenomeContext_Base::C_Assembly_and_sequence::C_Assembly_and_sequence(), CPC_Group_Base::C_Brackets::C_Brackets(), CBvar_Base::C_CD::C_CD(), CRs_Base::C_Create::C_Create(), CData_set_id_Base::C_Data_set_id_type::C_Data_set_id_type(), CBvar_Base::C_DC::C_DC(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Differential_Operator_mmlclass::C_Differential_Operator_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Differential_Operator_mmlclass::C_Differential_Operator_mmlclass(), CContExp_Base::C_Differential_Operator_mmlclass::C_Differential_Operator_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Differential_Operator_mmlclass::C_Differential_Operator_mmlclass(), CMathExpression_Base::C_ContExp::C_Differential_Operator_mmlclass::C_Differential_Operator_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Differential_Operator_mmlclass::C_Differential_Operator_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Differential_Operator_mmlclass::C_Differential_Operator_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Differential_Operator_mmlclass::C_Differential_Operator_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Differential_Operator_mmlclass::C_Differential_Operator_mmlclass(), CDict_Base::C_E::C_E(), CRs_Base::C_E_AlleleOrigin::C_E_AlleleOrigin(), CRs_Base::C_E_Frequency::C_E_Frequency(), CRs_Base::C_E_MergeHistory::C_E_MergeHistory(), CAssay_Base::C_Method::C_EMethod::C_EMethod(), CSeqEdit_Cmd_ReplaceAnnot_Base::C_Data::C_Feat::C_Feat(), CSeqTree_node_Base::C_Children::C_Footprint::C_Footprint(), CSeqEdit_Cmd_ReplaceAnnot_Base::C_Data::C_Graph::C_Graph(), CRs_Base::C_Het::C_Het(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Int_mmlclass::C_Int_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Int_mmlclass::C_Int_mmlclass(), CContExp_Base::C_Int_mmlclass::C_Int_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Int_mmlclass::C_Int_mmlclass(), CMathExpression_Base::C_ContExp::C_Int_mmlclass::C_Int_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Int_mmlclass::C_Int_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Int_mmlclass::C_Int_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Int_mmlclass::C_Int_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Int_mmlclass::C_Int_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Interval_mmlclass::C_Interval_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Interval_mmlclass::C_Interval_mmlclass(), CContExp_Base::C_Interval_mmlclass::C_Interval_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Interval_mmlclass::C_Interval_mmlclass(), CMathExpression_Base::C_ContExp::C_Interval_mmlclass::C_Interval_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Interval_mmlclass::C_Interval_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Interval_mmlclass::C_Interval_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Interval_mmlclass::C_Interval_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Interval_mmlclass::C_Interval_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Lambda_mmlclass::C_Lambda_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Lambda_mmlclass::C_Lambda_mmlclass(), CContExp_Base::C_Lambda_mmlclass::C_Lambda_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Lambda_mmlclass::C_Lambda_mmlclass(), CMathExpression_Base::C_ContExp::C_Lambda_mmlclass::C_Lambda_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Lambda_mmlclass::C_Lambda_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Lambda_mmlclass::C_Lambda_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Lambda_mmlclass::C_Lambda_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Lambda_mmlclass::C_Lambda_mmlclass(), CAuthor_Base::C_LC::C_LFIS::C_LFIS(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Limit_mmlclass::C_Limit_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Limit_mmlclass::C_Limit_mmlclass(), CContExp_Base::C_Limit_mmlclass::C_Limit_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Limit_mmlclass::C_Limit_mmlclass(), CMathExpression_Base::C_ContExp::C_Limit_mmlclass::C_Limit_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Limit_mmlclass::C_Limit_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Limit_mmlclass::C_Limit_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Limit_mmlclass::C_Limit_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Limit_mmlclass::C_Limit_mmlclass(), CApply_content_Base::C_Qualifier::C_E_Qualifier::C_DCL::C_LU::C_LU(), CBind_content_Base::C_Qualifier::C_E_Qualifier::C_DCL::C_LU::C_LU(), CDomainQ_Base::C_E::C_LU::C_LU(), CMmultiscripts_Base::C_MM::C_MM(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_functional_mmlclass::C_Nary_functional_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_functional_mmlclass::C_Nary_functional_mmlclass(), CContExp_Base::C_Nary_functional_mmlclass::C_Nary_functional_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_functional_mmlclass::C_Nary_functional_mmlclass(), CMathExpression_Base::C_ContExp::C_Nary_functional_mmlclass::C_Nary_functional_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_functional_mmlclass::C_Nary_functional_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_functional_mmlclass::C_Nary_functional_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_functional_mmlclass::C_Nary_functional_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_functional_mmlclass::C_Nary_functional_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Nary_linalg_mmlclass::C_Nary_linalg_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Nary_linalg_mmlclass::C_Nary_linalg_mmlclass(), CContExp_Base::C_Nary_linalg_mmlclass::C_Nary_linalg_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Nary_linalg_mmlclass::C_Nary_linalg_mmlclass(), CMathExpression_Base::C_ContExp::C_Nary_linalg_mmlclass::C_Nary_linalg_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Nary_linalg_mmlclass::C_Nary_linalg_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Nary_linalg_mmlclass::C_Nary_linalg_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Nary_linalg_mmlclass::C_Nary_linalg_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Nary_linalg_mmlclass::C_Nary_linalg_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Partialdiff_mmlclass::C_Partialdiff_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Partialdiff_mmlclass::C_Partialdiff_mmlclass(), CContExp_Base::C_Partialdiff_mmlclass::C_Partialdiff_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Partialdiff_mmlclass::C_Partialdiff_mmlclass(), CMathExpression_Base::C_ContExp::C_Partialdiff_mmlclass::C_Partialdiff_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Partialdiff_mmlclass::C_Partialdiff_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Partialdiff_mmlclass::C_Partialdiff_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Partialdiff_mmlclass::C_Partialdiff_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Partialdiff_mmlclass::C_Partialdiff_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Product_mmlclass::C_Product_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Product_mmlclass::C_Product_mmlclass(), CContExp_Base::C_Product_mmlclass::C_Product_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Product_mmlclass::C_Product_mmlclass(), CMathExpression_Base::C_ContExp::C_Product_mmlclass::C_Product_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Product_mmlclass::C_Product_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Product_mmlclass::C_Product_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Product_mmlclass::C_Product_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Product_mmlclass::C_Product_mmlclass(), CExchangeSet_Base::C_Query::C_Query(), CCount_Base::C_Range::C_Range(), CID2_Request_Get_Blob_Info_Base::C_Blob_id::C_Resolve::C_Resolve(), CRs_Base::C_Sequence::C_Sequence(), CAssembly_Base::C_SnpStat::C_SnpStat(), CExchangeSet_Base::C_SourceDatabase::C_SourceDatabase(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Sum_mmlclass::C_Sum_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Sum_mmlclass::C_Sum_mmlclass(), CContExp_Base::C_Sum_mmlclass::C_Sum_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Sum_mmlclass::C_Sum_mmlclass(), CMathExpression_Base::C_ContExp::C_Sum_mmlclass::C_Sum_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Sum_mmlclass::C_Sum_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Sum_mmlclass::C_Sum_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Sum_mmlclass::C_Sum_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Sum_mmlclass::C_Sum_mmlclass(), CExchangeSet_Base::C_Summary::C_Summary(), CAssay_Base::C_Taxonomy::C_Taxonomy(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Unary_logical_mmlclass::C_Unary_logical_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Unary_logical_mmlclass::C_Unary_logical_mmlclass(), CContExp_Base::C_Unary_logical_mmlclass::C_Unary_logical_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Unary_logical_mmlclass::C_Unary_logical_mmlclass(), CMathExpression_Base::C_ContExp::C_Unary_logical_mmlclass::C_Unary_logical_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Unary_logical_mmlclass::C_Unary_logical_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Unary_logical_mmlclass::C_Unary_logical_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Unary_logical_mmlclass::C_Unary_logical_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Unary_logical_mmlclass::C_Unary_logical_mmlclass(), CApply_content_Base::C_ContExp::C_E_ContExp::C_Unary_set_mmlclass::C_Unary_set_mmlclass(), CBind_content_Base::C_ContExp::C_E_ContExp::C_Unary_set_mmlclass::C_Unary_set_mmlclass(), CContExp_Base::C_Unary_set_mmlclass::C_Unary_set_mmlclass(), CImpliedMrow_Base::C_E::C_ContExp::C_Unary_set_mmlclass::C_Unary_set_mmlclass(), CMathExpression_Base::C_ContExp::C_Unary_set_mmlclass::C_Unary_set_mmlclass(), CMsrowExpression_Base::C_MathExpression::C_ContExp::C_Unary_set_mmlclass::C_Unary_set_mmlclass(), CMstackExpression_Base::C_MathExpression::C_ContExp::C_Unary_set_mmlclass::C_Unary_set_mmlclass(), CMultiScriptExpression_Base::C_MN::C_MathExpression::C_ContExp::C_Unary_set_mmlclass::C_Unary_set_mmlclass(), CMultiScriptExpression_Base::C_MN_2::C_MathExpression::C_ContExp::C_Unary_set_mmlclass::C_Unary_set_mmlclass(), CRs_Base::C_Update::C_Update(), CRs_Base::C_Validation::C_Validation(), CAaInterval_Base::CAaInterval_Base(), CAaSiteRange_Base::CAaSiteRange_Base(), CAbs_Base::CAbs_Base(), CAdd_descriptor_list_action_Base::CAdd_descriptor_list_action_Base(), CAECR_action_Base::CAECR_action_Base(), CAECRParse_action_Base::CAECRParse_action_Base(), CAffected_channel_Base::CAffected_channel_Base(), CAlign_annot_Base::CAlign_annot_Base(), CAlternative_protein_Base::CAlternative_protein_Base(), CAminoacid_modification_Base::CAminoacid_modification_Base(), CAnalysis_result_Base::CAnalysis_result_Base(), CAnalysis_summary_Base::CAnalysis_summary_Base(), CAnalysis_timestamp_Base::CAnalysis_timestamp_Base(), CAnd_Base::CAnd_Base(), CAnnotation_Base::CAnnotation_Base(), CAnnotation_xml_Base::CAnnotation_xml_Base(), CApply_action_Base::CApply_action_Base(), CApply_Base::CApply_Base(), CApply_content_Base::CApply_content_Base(), CApply_feature_action_Base::CApply_feature_action_Base(), CApply_table_action_Base::CApply_table_action_Base(), CApprox_Base::CApprox_Base(), CArccos_Base::CArccos_Base(), CArccosh_Base::CArccosh_Base(), CArccot_Base::CArccot_Base(), CArccoth_Base::CArccoth_Base(), CArccsc_Base::CArccsc_Base(), CArccsch_Base::CArccsch_Base(), CArcsec_Base::CArcsec_Base(), CArcsech_Base::CArcsech_Base(), CArcsin_Base::CArcsin_Base(), CArcsinh_Base::CArcsinh_Base(), CArctan_Base::CArctan_Base(), CArctanh_Base::CArctanh_Base(), CArg_Base::CArg_Base(), CAsapratio_contribution_Base::CAsapratio_contribution_Base(), CAsapratio_lc_heavypeak_Base::CAsapratio_lc_heavypeak_Base(), CAsapratio_lc_lightpeak_Base::CAsapratio_lc_lightpeak_Base(), CAsapratio_peptide_data_Base::CAsapratio_peptide_data_Base(), CAsapratio_result_Base::CAsapratio_result_Base(), CAsapratio_summary_Base::CAsapratio_summary_Base(), CAsapratio_timestamp_Base::CAsapratio_timestamp_Base(), CAssay_Base::CAssay_Base(), CAssembly_Base::CAssembly_Base(), CAtomic_coordinates_Base::CAtomic_coordinates_Base(), CAuth_list_Base::CAuth_list_Base(), CAuthor_Base::CAuthor_Base(), CBaseURL_Base::CBaseURL_Base(), CBind_Base::CBind_Base(), CBind_content_Base::CBind_content_Base(), CBioseq_Base::CBioseq_Base(), CBioSource_Base::CBioSource_Base(), CBiostruc_align_Base::CBiostruc_align_Base(), CBiostruc_Base::CBiostruc_Base(), CBiostruc_graph_pntr_Base::CBiostruc_graph_pntr_Base(), CBiostruc_molecule_pntr_Base::CBiostruc_molecule_pntr_Base(), CBiostruc_replace_Base::CBiostruc_replace_Base(), CBiostruc_residue_graph_set_pntr_Base::CBiostruc_residue_graph_set_pntr_Base(), CBiostruc_seq_Base::CBiostruc_seq_Base(), CBiostruc_seqs_aligns_cdd_Base::CBiostruc_seqs_aligns_cdd_Base(), CBiostruc_seqs_Base::CBiostruc_seqs_Base(), CBiostruc_source_Base::CBiostruc_source_Base(), CBioTreeContainer_Base::CBioTreeContainer_Base(), CBlast4_archive_Base::CBlast4_archive_Base(), CBlast4_database_info_Base::CBlast4_database_info_Base(), CBlast4_get_queries_reply_Base::CBlast4_get_queries_reply_Base(), CBlast4_get_request_info_reply_Base::CBlast4_get_request_info_reply_Base(), CBlast4_get_seq_parts_request_Base::CBlast4_get_seq_parts_request_Base(), CBlast4_get_sequences_request_Base::CBlast4_get_sequences_request_Base(), CBlast4_parameter_Base::CBlast4_parameter_Base(), CBlast4_queue_search_request_Base::CBlast4_queue_search_request_Base(), CBlast4_reply_Base::CBlast4_reply_Base(), CBlast4_request_Base::CBlast4_request_Base(), CBlast4_seq_part_data_Base::CBlast4_seq_part_data_Base(), CBlast4_simple_alignment_Base::CBlast4_simple_alignment_Base(), CBlast_db_mask_info_Base::CBlast_db_mask_info_Base(), CBlastOutput_Base::CBlastOutput_Base(), CBrick_Base::CBrick_Base(), CCamera_Base::CCamera_Base(), CCard_Base::CCard_Base(), CCartesianproduct_Base::CCartesianproduct_Base(), CCbytes_Base::CCbytes_Base(), CCdd_Base::CCdd_Base(), CCdd_org_ref_Base::CCdd_org_ref_Base(), CCdd_pref_nodes_Base::CCdd_pref_nodes_Base(), CCDD_Reply_Base::CCDD_Reply_Base(), CCDD_Reply_Get_Blob_By_Seq_Id_Base::CCDD_Reply_Get_Blob_By_Seq_Id_Base(), CCDD_Reply_Get_Blob_Id_Base::CCDD_Reply_Get_Blob_Id_Base(), CCDD_Request_Base::CCDD_Request_Base(), CCdd_tree_Base::CCdd_tree_Base(), CCeiling_Base::CCeiling_Base(), CCerror_Base::CCerror_Base(), CCi_Base::CCi_Base(), CCit_art_Base::CCit_art_Base(), CCit_book_Base::CCit_book_Base(), CCit_jour_Base::CCit_jour_Base(), CCit_let_Base::CCit_let_Base(), CCit_pat_Base::CCit_pat_Base(), CCit_proc_Base::CCit_proc_Base(), CCit_sub_Base::CCit_sub_Base(), CClone_seq_Base::CClone_seq_Base(), CCn3d_backbone_style_Base::CCn3d_backbone_style_Base(), CCn3d_general_style_Base::CCn3d_general_style_Base(), CCn3d_object_location_Base::CCn3d_object_location_Base(), CCn3d_style_dictionary_Base::CCn3d_style_dictionary_Base(), CCn3d_style_settings_Base::CCn3d_style_settings_Base(), CCn3d_style_table_item_Base::CCn3d_style_table_item_Base(), CCn3d_view_settings_Base::CCn3d_view_settings_Base(), CCn_Base::CCn_Base(), CCode_break_Base::CCode_break_Base(), CCodomain_Base::CCodomain_Base(), CComment_rule_Base::CComment_rule_Base(), CComplexes_Base::CComplexes_Base(), CComponent_Base::CComponent_Base(), CCompose_Base::CCompose_Base(), CCone_Base::CCone_Base(), CConjugate_Base::CConjugate_Base(), CContributing_channel_Base::CContributing_channel_Base(), CConversion_Base::CConversion_Base(), CConvert_action_Base::CConvert_action_Base(), CCopy_action_Base::CCopy_action_Base(), CCos_Base::CCos_Base(), CCosh_Base::CCosh_Base(), CCot_Base::CCot_Base(), CCoth_Base::CCoth_Base(), CCreate_TSA_ids_action_Base::CCreate_TSA_ids_action_Base(), CCs_Base::CCs_Base(), CCsc_Base::CCsc_Base(), CCsch_Base::CCsch_Base(), CCsymbol_Base::CCsymbol_Base(), CCtermExtension_Base::CCtermExtension_Base(), CCurl_Base::CCurl_Base(), CCylinder_Base::CCylinder_Base(), CData_filter_Base::CData_filter_Base(), CData_set_id_type_Base::CData_set_id_type_Base(), CDatabase_refresh_timestamp_Base::CDatabase_refresh_timestamp_Base(), CDataset_derivation_Base::CDataset_derivation_Base(), CDbtag_Base::CDbtag_Base(), CDeclare_Base::CDeclare_Base(), CDeletion_Base::CDeletion_Base(), CDelins_Base::CDelins_Base(), CDensity_coordinates_Base::CDensity_coordinates_Base(), CDeterminant_Base::CDeterminant_Base(), CDiff_Base::CDiff_Base(), CDistribution_point_Base::CDistribution_point_Base(), CDivergence_Base::CDivergence_Base(), CDivide_Base::CDivide_Base(), CDomain_Base::CDomain_Base(), CDomain_parent_Base::CDomain_parent_Base(), CDuplication_Base::CDuplication_Base(), CEdit_action_Base::CEdit_action_Base(), CEdit_feature_location_action_Base::CEdit_feature_location_action_Base(), CEMBL_block_Base::CEMBL_block_Base(), CEMBL_xref_Base::CEMBL_xref_Base(), CEmptyset_Base::CEmptyset_Base(), CEMyNCBIResult_Base::CEMyNCBIResult_Base(), CEntrez2_eval_boolean_Base::CEntrez2_eval_boolean_Base(), CEntrez2_get_links_Base::CEntrez2_get_links_Base(), CEntrez2_link_set_Base::CEntrez2_link_set_Base(), CEntrez2_reply_Base::CEntrez2_reply_Base(), CEntrez2_request_Base::CEntrez2_request_Base(), CEntrez_general_Base::CEntrez_general_Base(), CEntrezgene_Base::CEntrezgene_Base(), CEnzymatic_search_constraint_Base::CEnzymatic_search_constraint_Base(), CEq_Base::CEq_Base(), CEquivalent_Base::CEquivalent_Base(), CError_point_Base::CError_point_Base(), CEulergamma_Base::CEulergamma_Base(), CExchangeSet_Base::CExchangeSet_Base(), CExists_Base::CExists_Base(), CExon_params_Base::CExon_params_Base(), CExp_Base::CExp_Base(), CExponentiale_Base::CExponentiale_Base(), CExt_loc_Base::CExt_loc_Base(), CFactorial_Base::CFactorial_Base(), CFactorof_Base::CFactorof_Base(), CFalse_Base::CFalse_Base(), CFeatDefGroupSet_Base::CFeatDefGroupSet_Base(), CFeature_field_Base::CFeature_field_Base(), CFeature_field_pair_Base::CFeature_field_pair_Base(), CFFile_Base::CFFile_Base(), CField_constraint_Base::CField_constraint_Base(), CFileConfiguration_Base::CFileConfiguration_Base(), CFilter_Base::CFilter_Base(), CFloor_Base::CFloor_Base(), CFolderInfo_Base::CFolderInfo_Base(), CForall_Base::CForall_Base(), CFragment_masses_Base::CFragment_masses_Base(), CFxnSet_Base::CFxnSet_Base(), CGBenchFeedbackRequest_Base::CGBenchFeedbackRequest_Base(), CGBenchInitReply_Base::CGBenchInitReply_Base(), CGBenchInitRequest_Base::CGBenchInitRequest_Base(), CGBenchVersionReply_Base::CGBenchVersionReply_Base(), CGBenchVersionRequest_Base::CGBenchVersionRequest_Base(), CGBProject_Base::CGBProject_Base(), CGBProject_ver2_Base::CGBProject_ver2_Base(), CGBWorkspace_Base::CGBWorkspace_Base(), CGC_AssemblySet_Base::CGC_AssemblySet_Base(), CGC_AssemblyUnit_Base::CGC_AssemblyUnit_Base(), CGC_External_Seqid_Base::CGC_External_Seqid_Base(), CGC_Replicon_Base::CGC_Replicon_Base(), CGC_SeqIdAlias_Base::CGC_SeqIdAlias_Base(), CGC_Sequence_Base::CGC_Sequence_Base(), CGCClient_AssemblySequenceInfo_Base::CGCClient_AssemblySequenceInfo_Base(), CGcd_Base::CGcd_Base(), CGene_track_Base::CGene_track_Base(), CGeq_Base::CGeq_Base(), CGnomon_param_Base::CGnomon_param_Base(), CGrad_Base::CGrad_Base(), CGt_Base::CGt_Base(), CGuiPkgDependency_Base::CGuiPkgDependency_Base(), CHG_Alignment_Base::CHG_Alignment_Base(), CHG_Commentary_Base::CHG_Commentary_Base(), CHG_Node_Base::CHG_Node_Base(), CID1Seq_hist_Base::CID1Seq_hist_Base(), CID1SeqEntry_info_Base::CID1SeqEntry_info_Base(), CID2_Blob_Seq_id_Base::CID2_Blob_Seq_id_Base(), CID2_Reply_Base::CID2_Reply_Base(), CID2_Reply_Get_Blob_Base::CID2_Reply_Get_Blob_Base(), CID2_Reply_Get_Blob_Id_Base::CID2_Reply_Get_Blob_Id_Base(), CID2_Reply_Get_Blob_Seq_ids_Base::CID2_Reply_Get_Blob_Seq_ids_Base(), CID2_Reply_Get_Seq_id_Base::CID2_Reply_Get_Seq_id_Base(), CID2_Reply_ReGet_Blob_Base::CID2_Reply_ReGet_Blob_Base(), CID2_Request_Base::CID2_Request_Base(), CID2_Request_Get_Blob_Id_Base::CID2_Request_Get_Blob_Id_Base(), CID2_Request_Get_Blob_Info_Base::CID2_Request_Get_Blob_Info_Base(), CID2_Request_Get_Seq_id_Base::CID2_Request_Get_Seq_id_Base(), CID2_Request_ReGet_Blob_Base::CID2_Request_ReGet_Blob_Base(), CID2S_Bioseq_place_Info_Base::CID2S_Bioseq_place_Info_Base(), CID2S_Bioseqs_Info_Base::CID2S_Bioseqs_Info_Base(), CID2S_Chunk_Data_Base::CID2S_Chunk_Data_Base(), CID2S_Reply_Get_Chunk_Base::CID2S_Reply_Get_Chunk_Base(), CID2S_Reply_Get_Split_Info_Base::CID2S_Reply_Get_Split_Info_Base(), CID2S_Request_Get_Chunks_Base::CID2S_Request_Get_Chunks_Base(), CID2S_Seq_assembly_Info_Base::CID2S_Seq_assembly_Info_Base(), CID2S_Seq_id_Interval_Base::CID2S_Seq_id_Interval_Base(), CID2S_Seq_id_Ints_Base::CID2S_Seq_id_Ints_Base(), CId_pat_Base::CId_pat_Base(), CIdent_Base::CIdent_Base(), CImage_Base::CImage_Base(), CImaginary_Base::CImaginary_Base(), CImaginaryi_Base::CImaginaryi_Base(), CImplies_Base::CImplies_Base(), CImprint_Base::CImprint_Base(), CIn_Base::CIn_Base(), CInferenceSupport_Base::CInferenceSupport_Base(), CInfinity_Base::CInfinity_Base(), CInputfile_Base::CInputfile_Base(), CInsertion_Base::CInsertion_Base(), CInt_Base::CInt_Base(), CIntegers_Base::CIntegers_Base(), CIntensity_Base::CIntensity_Base(), CInter_residue_bond_Base::CInter_residue_bond_Base(), CInteract_summary_Base::CInteract_summary_Base(), CIntergenic_params_Base::CIntergenic_params_Base(), CIntersect_Base::CIntersect_Base(), CInterval_Base::CInterval_Base(), CIntron_params_Base::CIntron_params_Base(), CInverse_Base::CInverse_Base(), CInversion_Base::CInversion_Base(), CLambda_Base::CLambda_Base(), CLaplacian_Base::CLaplacian_Base(), CLcm_Base::CLcm_Base(), CLength_distribution_params_Base::CLength_distribution_params_Base(), CLeq_Base::CLeq_Base(), CLibra_result_Base::CLibra_result_Base(), CLibra_summary_Base::CLibra_summary_Base(), CLimit_Base::CLimit_Base(), CList_Base::CList_Base(), CLn_Base::CLn_Base(), CLoaderDescriptor_Base::CLoaderDescriptor_Base(), CLog_Base::CLog_Base(), CLt_Base::CLt_Base(), CMaction_Base::CMaction_Base(), CMaligngroup_Base::CMaligngroup_Base(), CMalignmark_Base::CMalignmark_Base(), CMapLoc_Base::CMapLoc_Base(), CMaps_Base::CMaps_Base(), CMath_Base::CMath_Base(), CMatrixrow_Base::CMatrixrow_Base(), CMax_Base::CMax_Base(), CMean_Base::CMean_Base(), CMedian_Base::CMedian_Base(), CMedline_entry_Base::CMedline_entry_Base(), CMeeting_Base::CMeeting_Base(), CMenclose_Base::CMenclose_Base(), CMerror_Base::CMerror_Base(), CMfenced_Base::CMfenced_Base(), CMfrac_Base::CMfrac_Base(), CMglyph_Base::CMglyph_Base(), CMi_Base::CMi_Base(), CMim_edit_item_Base::CMim_edit_item_Base(), CMim_reference_Base::CMim_reference_Base(), CMim_set_Base::CMim_set_Base(), CMin_Base::CMin_Base(), CMinus_Base::CMinus_Base(), CMixture_model_Base::CMixture_model_Base(), CMixturemodel_distribution_Base::CMixturemodel_distribution_Base(), CMlabeledtr_Base::CMlabeledtr_Base(), CMlongdiv_Base::CMlongdiv_Base(), CMmultiscripts_Base::CMmultiscripts_Base(), CMn_Base::CMn_Base(), CMo_Base::CMo_Base(), CMod_aminoacid_mass_Base::CMod_aminoacid_mass_Base(), CMode_Base::CMode_Base(), CModel_coordinate_set_Base::CModel_coordinate_set_Base(), CModelEvidenceItem_Base::CModelEvidenceItem_Base(), CModification_info_Base::CModification_info_Base(), CMolinfo_block_Base::CMolinfo_block_Base(), CMolinfo_field_constraint_Base::CMolinfo_field_constraint_Base(), CMoment_Base::CMoment_Base(), CMover_Base::CMover_Base(), CMpadded_Base::CMpadded_Base(), CMphantom_Base::CMphantom_Base(), CMprescripts_Base::CMprescripts_Base(), CMroot_Base::CMroot_Base(), CMrow_Base::CMrow_Base(), CMs_Base::CMs_Base(), CMSBioseq_Base::CMSBioseq_Base(), CMscarries_Base::CMscarries_Base(), CMscarry_Base::CMscarry_Base(), CMsgroup_Base::CMsgroup_Base(), CMsline_Base::CMsline_Base(), CMsms_pipeline_analysis_Base::CMsms_pipeline_analysis_Base(), CMsms_run_summary_Base::CMsms_run_summary_Base(), CMspace_Base::CMspace_Base(), CMsqrt_Base::CMsqrt_Base(), CMSRequest_Base::CMSRequest_Base(), CMsrow_Base::CMsrow_Base(), CMstack_Base::CMstack_Base(), CMstyle_Base::CMstyle_Base(), CMsub_Base::CMsub_Base(), CMsubsup_Base::CMsubsup_Base(), CMsup_Base::CMsup_Base(), CMtable_Base::CMtable_Base(), CMtd_Base::CMtd_Base(), CMtext_Base::CMtext_Base(), CMtr_Base::CMtr_Base(), CMultiScriptExpression_Base::CMultiScriptExpression_Base(), CMunder_Base::CMunder_Base(), CMunderover_Base::CMunderover_Base(), CNaIdentity_Base::CNaIdentity_Base(), CNaSub_Base::CNaSub_Base(), CNaturalnumbers_Base::CNaturalnumbers_Base(), CNCBI_Sample_ASN_Type_Base::CNCBI_Sample_ASN_Type_Base(), CNegmodel_distribution_Base::CNegmodel_distribution_Base(), CNeq_Base::CNeq_Base(), CNone_Base::CNone_Base(), CNot_Base::CNot_Base(), CNotanumber_Base::CNotanumber_Base(), CNotin_Base::CNotin_Base(), CNotprsubset_Base::CNotprsubset_Base(), CNotsubset_Base::CNotsubset_Base(), CNtermExtension_Base::CNtermExtension_Base(), CNtInterval_Base::CNtInterval_Base(), CNtSite_Base::CNtSite_Base(), CNtSiteRange_Base::CNtSiteRange_Base(), COperand_Base::COperand_Base(), COr_Base::COr_Base(), COther_feature_Base::COther_feature_Base(), COtherwise_Base::COtherwise_Base(), COuterproduct_Base::COuterproduct_Base(), CPacked_seqpnt_Base::CPacked_seqpnt_Base(), CParameter_Base::CParameter_Base(), CParse_action_Base::CParse_action_Base(), CParse_dst_org_Base::CParse_dst_org_Base(), CParse_src_org_Base::CParse_src_org_Base(), CPartialdiff_Base::CPartialdiff_Base(), CPatent_priority_Base::CPatent_priority_Base(), CPatent_seq_id_Base::CPatent_seq_id_Base(), CPC_AnnotatedXRef_Base::CPC_AnnotatedXRef_Base(), CPC_AssayData_Base::CPC_AssayData_Base(), CPC_AssayDescription_Base::CPC_AssayDescription_Base(), CPC_AssaySubmit_Base::CPC_AssaySubmit_Base(), CPC_AtomSource_Base::CPC_AtomSource_Base(), CPC_Compound_Base::CPC_Compound_Base(), CPC_DBTracking_Base::CPC_DBTracking_Base(), CPC_InfoData_Base::CPC_InfoData_Base(), CPC_Substance_Base::CPC_Substance_Base(), CPDB_block_Base::CPDB_block_Base(), CPDB_replace_Base::CPDB_replace_Base(), CPeptideprophet_result_Base::CPeptideprophet_result_Base(), CPeptideprophet_summary_Base::CPeptideprophet_summary_Base(), CPi_Base::CPi_Base(), CPiece_Base::CPiece_Base(), CPiecewise_Base::CPiecewise_Base(), CPlist_Base::CPlist_Base(), CPluginArg_Base::CPluginArg_Base(), CPluginInfo_Base::CPluginInfo_Base(), CPluginLibInfo_Base::CPluginLibInfo_Base(), CPluginMessage_Base::CPluginMessage_Base(), CPluginMRUEntry_Base::CPluginMRUEntry_Base(), CPluginRequest_Base::CPluginRequest_Base(), CPlus_Base::CPlus_Base(), CPosmodel_distribution_Base::CPosmodel_distribution_Base(), CPower_Base::CPower_Base(), CPrimarySequence_Base::CPrimarySequence_Base(), CPrimes_Base::CPrimes_Base(), CPrintFormat_Base::CPrintFormat_Base(), CPrintTemplate_Base::CPrintTemplate_Base(), CProduct_Base::CProduct_Base(), CProject_Base::CProject_Base(), CProjectAnnot_Base::CProjectAnnot_Base(), CProjectDescr_Base::CProjectDescr_Base(), CProjectFolder_Base::CProjectFolder_Base(), CProjectHistoryItem_Base::CProjectHistoryItem_Base(), CProjectItem_Base::CProjectItem_Base(), CProteinSub_Base::CProteinSub_Base(), CPrsubset_Base::CPrsubset_Base(), CPssmWithParameters_Base::CPssmWithParameters_Base(), CPub_field_constraint_Base::CPub_field_constraint_Base(), CPub_field_special_constraint_Base::CPub_field_special_constraint_Base(), CPubdesc_Base::CPubdesc_Base(), CPubStatusDate_Base::CPubStatusDate_Base(), CQuotient_Base::CQuotient_Base(), CRangeControl_Base::CRangeControl_Base(), CRationals_Base::CRationals_Base(), CReal_Base::CReal_Base(), CReals_Base::CReals_Base(), CReference_frame_Base::CReference_frame_Base(), CRegion_pntrs_Base::CRegion_pntrs_Base(), CRem_Base::CRem_Base(), CRemap_reply_Base::CRemap_reply_Base(), CRemap_request_Base::CRemap_request_Base(), CRemove_action_Base::CRemove_action_Base(), CRemove_outside_action_Base::CRemove_outside_action_Base(), CRemove_sequences_action_Base::CRemove_sequences_action_Base(), CRemove_xrefs_action_Base::CRemove_xrefs_action_Base(), CRepeat_Base::CRepeat_Base(), CReplace_rule_Base::CReplace_rule_Base(), CReport_Base::CReport_Base(), CResidue_Base::CResidue_Base(), CRna_qual_Base::CRna_qual_Base(), CRna_qual_pair_Base::CRna_qual_pair_Base(), CRoc_data_point_Base::CRoc_data_point_Base(), CRoot_Base::CRoot_Base(), CRs_Base::CRs_Base(), CRsLinkout_Base::CRsLinkout_Base(), CRsStruct_Base::CRsStruct_Base(), CSample_enzyme_Base::CSample_enzyme_Base(), CScalarproduct_Base::CScalarproduct_Base(), CScaled_int_multi_data_Base::CScaled_int_multi_data_Base(), CScaled_real_multi_data_Base::CScaled_real_multi_data_Base(), CSdev_Base::CSdev_Base(), CSearch_database_Base::CSearch_database_Base(), CSearch_hit_Base::CSearch_hit_Base(), CSearch_result_Base::CSearch_result_Base(), CSearch_score_Base::CSearch_score_Base(), CSearch_summary_Base::CSearch_summary_Base(), CSec_Base::CSec_Base(), CSech_Base::CSech_Base(), CSelector_Base::CSelector_Base(), CSemantics_Base::CSemantics_Base(), CSeq_align_Base::CSeq_align_Base(), CSeq_annot_Base::CSeq_annot_Base(), CSeq_bond_Base::CSeq_bond_Base(), CSeq_feat_Base::CSeq_feat_Base(), CSeq_graph_Base::CSeq_graph_Base(), CSeq_interval_Base::CSeq_interval_Base(), CSeq_point_Base::CSeq_point_Base(), CSeq_submit_Base::CSeq_submit_Base(), CSeq_test_result_Base::CSeq_test_result_Base(), CSeqEdit_Cmd_AddAnnot_Base::CSeqEdit_Cmd_AddAnnot_Base(), CSeqEdit_Cmd_AddDesc_Base::CSeqEdit_Cmd_AddDesc_Base(), CSeqEdit_Cmd_AddDescr_Base::CSeqEdit_Cmd_AddDescr_Base(), CSeqEdit_Cmd_AddId_Base::CSeqEdit_Cmd_AddId_Base(), CSeqEdit_Cmd_AttachAnnot_Base::CSeqEdit_Cmd_AttachAnnot_Base(), CSeqEdit_Cmd_AttachSeq_Base::CSeqEdit_Cmd_AttachSeq_Base(), CSeqEdit_Cmd_AttachSeqEntry_Base::CSeqEdit_Cmd_AttachSeqEntry_Base(), CSeqEdit_Cmd_AttachSet_Base::CSeqEdit_Cmd_AttachSet_Base(), CSeqEdit_Cmd_ChangeSeqAttr_Base::CSeqEdit_Cmd_ChangeSeqAttr_Base(), CSeqEdit_Cmd_ChangeSetAttr_Base::CSeqEdit_Cmd_ChangeSetAttr_Base(), CSeqEdit_Cmd_RemoveAnnot_Base::CSeqEdit_Cmd_RemoveAnnot_Base(), CSeqEdit_Cmd_RemoveDesc_Base::CSeqEdit_Cmd_RemoveDesc_Base(), CSeqEdit_Cmd_RemoveId_Base::CSeqEdit_Cmd_RemoveId_Base(), CSeqEdit_Cmd_RemoveSeqEntry_Base::CSeqEdit_Cmd_RemoveSeqEntry_Base(), CSeqEdit_Cmd_ReplaceAnnot_Base::CSeqEdit_Cmd_ReplaceAnnot_Base(), CSeqEdit_Cmd_ResetDescr_Base::CSeqEdit_Cmd_ResetDescr_Base(), CSeqEdit_Cmd_ResetIds_Base::CSeqEdit_Cmd_ResetIds_Base(), CSeqEdit_Cmd_ResetSeqAttr_Base::CSeqEdit_Cmd_ResetSeqAttr_Base(), CSeqEdit_Cmd_ResetSeqEntry_Base::CSeqEdit_Cmd_ResetSeqEntry_Base(), CSeqEdit_Cmd_ResetSetAttr_Base::CSeqEdit_Cmd_ResetSetAttr_Base(), CSeqEdit_Cmd_SetDescr_Base::CSeqEdit_Cmd_SetDescr_Base(), CSeqTable_column_Base::CSeqTable_column_Base(), CSeqTestResults_Base::CSeqTestResults_Base(), CSeqTree_node_Base::CSeqTree_node_Base(), CSequence_search_constraint_Base::CSequence_search_constraint_Base(), CSequence_tree_Base::CSequence_tree_Base(), CSet_Base::CSet_Base(), CSetdiff_Base::CSetdiff_Base(), CShare_Base::CShare_Base(), CSimpleVariant_Base::CSimpleVariant_Base(), CSin_Base::CSin_Base(), CSinh_Base::CSinh_Base(), CSort_fields_action_Base::CSort_fields_action_Base(), CSparse_align_Base::CSparse_align_Base(), CSpecificity_Base::CSpecificity_Base(), CSpectrum_query_Base::CSpectrum_query_Base(), CSphere_Base::CSphere_Base(), CSpliced_exon_Base::CSpliced_exon_Base(), CSs_Base::CSs_Base(), CStructured_comment_field_pair_Base::CStructured_comment_field_pair_Base(), CSubmit_block_Base::CSubmit_block_Base(), CSubsequence_Base::CSubsequence_Base(), CSubset_Base::CSubset_Base(), CSum_Base::CSum_Base(), CSurface_coordinates_Base::CSurface_coordinates_Base(), CSuspect_rule_Base::CSuspect_rule_Base(), CSwap_action_Base::CSwap_action_Base(), CT3Data_Base::CT3Data_Base(), CT3StatusFlags_Base::CT3StatusFlags_Base(), CTable_match_Base::CTable_match_Base(), CTableCellExpression_Base::CTableCellExpression_Base(), CTan_Base::CTan_Base(), CTanh_Base::CTanh_Base(), CTendsto_Base::CTendsto_Base(), CTerminal_modification_Base::CTerminal_modification_Base(), CTimes_Base::CTimes_Base(), CTMgr_CreateRemoteTrackRequest_Base::CTMgr_CreateRemoteTrackRequest_Base(), CTMgr_CreateTracksetRequest_Base::CTMgr_CreateTracksetRequest_Base(), CTMgr_CreateUserTrackRequest_Base::CTMgr_CreateUserTrackRequest_Base(), CTMgr_DatasetItemSeq_Base::CTMgr_DatasetItemSeq_Base(), CTMgr_DisplayTrack_Base::CTMgr_DisplayTrack_Base(), CTMgr_DisplayTrackRequest_Base::CTMgr_DisplayTrackRequest_Base(), CTMgr_HubTrack_Base::CTMgr_HubTrack_Base(), CTMgr_ItemResolverRequest_Base::CTMgr_ItemResolverRequest_Base(), CTMgr_RemoveUserTrackRequest_Base::CTMgr_RemoveUserTrackRequest_Base(), CTMgr_RetrieveTracksetRequest_Base::CTMgr_RetrieveTracksetRequest_Base(), CTMgr_SwitchTrackContextRequest_Base::CTMgr_SwitchTrackContextRequest_Base(), CTMgr_SwitchTrackException_Base::CTMgr_SwitchTrackException_Base(), CTMgr_TrackItems_Base::CTMgr_TrackItems_Base(), CTMgr_TrackSet_Base::CTMgr_TrackSet_Base(), CTool_Base::CTool_Base(), CTranslation_constraint_Base::CTranslation_constraint_Base(), CTranspose_Base::CTranspose_Base(), CTrue_Base::CTrue_Base(), CUnion_Base::CUnion_Base(), CUser_field_Base::CUser_field_Base(), CUser_object_Base::CUser_object_Base(), CVariance_Base::CVariance_Base(), CVariantExpression_Base::CVariantExpression_Base(), CVariantPlacement_Base::CVariantPlacement_Base(), CVariation_Base::CVariation_Base(), CVariation_ref_Base::CVariation_ref_Base(), CVector_Base::CVector_Base(), CVectorproduct_Base::CVectorproduct_Base(), CVersionResponse_Base::CVersionResponse_Base(), CViewDesc_Base::CViewDesc_Base(), CViewDescriptor_Base::CViewDescriptor_Base(), CVisualStudioProject_Base::CVisualStudioProject_Base(), CWorkspaceFolder_Base::CWorkspaceFolder_Base(), CXor_Base::CXor_Base(), CXpressratio_result_Base::CXpressratio_result_Base(), CXpressratio_summary_Base::CXpressratio_summary_Base(), and CXpressratio_timestamp_Base::CXpressratio_timestamp_Base().
◆ IsNull() [1/2]template<class C , class Locker >
bool CRef< C, Locker >::IsNull ( void ) const inlineCheck if pointer is null – same effect as Empty().
Definition at line 735 of file ncbiobj.hpp.
Referenced by CTableAnnotDataSource::AddSeqLoc(), BOOST_AUTO_TEST_CASE(), CQueueDataBase::CheckExecutionTimeout(), CPhyloTree::Clear(), CUnorderedSplitter::CombineAlignments(), IProjectViewFactory::CombineObjects(), CTableViewWithTextViewNav::CombineObjects(), CComponentSearchForm::ConstructQuery(), CCpgSearchForm::ConstructQuery(), CFeatureSearchForm::ConstructQuery(), COrfSearchForm::ConstructQuery(), CSequenceSearchForm::ConstructQuery(), CPhyloTreeMaxDirectChildDist::CPhyloTreeMaxDirectChildDist(), CTableAnnotDataSource::CreateFeature(), CBlastDbSet::CreateLocalDbAdapter(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CChangePhyloPropertyCmd::Execute(), CQueryParsePanel::CQueryJob::Execute(), CBlastAligner::GenerateAlignments(), CRemoteBlastAligner::GenerateAlignments(), CPhyloTreeDataSource::GenerateTooltipFormat(), CAutoAddDesc::Get(), CPhyloTree::GetColorTable(), CTableImportListCtrl::GetColumnImageID(), CSGDataSourceContext::GetDS(), CEditObjectSeq_desc::GetEditCommand(), CObjectListTableModel::GetExtraValueAt(), CObjectListSelTM::GetExtraValueAt(), CPhyloTree::GetGraphicsModel(), CObjectListTableModel::GetImageAlias(), CMActionTree::GetMActionTypesForTarget(), CObjectListTableModel::GetNumColumns(), CObjectListTableModel::GetNumRows(), COpenDataSourceObjectDlg::GetObjectLoader(), CScoreLookup::GetScore(), CAlignSpanView::GetSelection(), CLocationListCtrl::GetSeq_loc(), CCdCore::GetSpeciesForIndex(), CCdCore::GetSpeciesForRow(), CTableDataGBProject::GetStringValue(), CGencollIdMapper::GetSynonyms(), CDotMatrixView::GetVisibleRanges(), CGencollIdMapper::Guess(), CTableColumnTypeGuesser::GuessColumns(), CAutoCompleteCombo::HasProvider(), CPhyloTreeDataSource::Init(), PT::CProjectItem::Initialize(), CVcfTableView::InitView(), CAttribTableColumnIdPanel::IsInputValid(), CTableFixedWidthPanel::IsInputValid(), CAutoAddDesc::IsNull(), CScheduler_ExecThread_Impl::Main(), CThreadPool_ThreadImpl::Main(), CThreadPool_ServiceThread::Main(), CGencollIdMapper::Map(), CChangePhyloPropertyCmd::Merge(), CTable2AsnContext::MergeWithTemplate(), CTableColumnIdPanel::NeedsAssemblyMapping(), CQueueDataBase::NotifyListeners(), CPhyloForce::OnAppJobNotification(), CTableColumnIdPanel::OnAssemblyChanged(), CPhyTreeView::OnBioTreeChanged(), CNetScheduleHandler::OnClose(), CNetStorageHandler::OnClose(), CTableColumnIdPanel::OnColumnNametxtTextUpdated(), CAttribTableColumnIdPanel::OnCtableImportListctrlColLeftClick(), CTableColumnIdPanel::OnCtableImportListctrlColLeftClick(), CTableFixedWidthPanel::OnCtableImportListctrlColLeftClick(), CTableColumnIdPanel::OnDataTypePropertySelected(), CTableFormatPanel::OnFirstLineSpinCtrlUpdated(), CTableDataListCtrl::OnGetItemText(), CTableImportListCtrl::OnGetItemText(), CTableColumnIdPanel::OnNumberFmtBtnSelected(), CTableColumnIdPanel::OnOneBasedIntCheckClick(), CPhyloTreeWidget::OnOpenPropertiesDlg(), CTableColumnIdPanel::OnRealNumberFormatBtnSelected(), CTableColumnIdPanel::OnSeqidFormatBtnSelected(), CAttribTableColumnIdPanel::OnSkipBtnSelected(), CTableColumnIdPanel::OnSkipBtnSelected(), CTableColumnIdPanel::OnTextFmtBtnSelected(), COpenViewDlg::OnViewSelected(), SCompareFeats_OpLess::operator()(), CDbEquals::operator()(), COrgModEquals::operator()(), CSubtypeEquals::operator()(), CPdf::PrintText(), CAutoCompleteCombo::ProvideItems(), CQueueDataBase::Purge(), CQueueDataBase::PurgeAffinities(), CQueueDataBase::PurgeBlacklistedJobs(), CQueueDataBase::PurgeClientRegistry(), CQueueDataBase::PurgeGroups(), CNCBlobStorage::ReadBlobInfo(), CNCBlobStorage::ReadChunkData(), CFastaReader::ReadOneSeq(), CPhyloTreeWidget::RemoveCurrentDataSource(), CSubtreeBoundary::RenderBoundaryVbo(), IPhyloTreeRender::RenderPdf(), CSearch< LEGACY, NHITS >::ReSearch(), CNgAlignApp::Run(), CCompartmentFinder< THit >::Run(), CVectorScreen::Run(), CFarPointerSeq::RunBlast(), CCreateSeqHistForTpa::RunBlast(), CMacroFunction_Autodef::s_AddAutodefOptions(), s_GetAssemblySeqIds(), s_GetClipLoc(), s_GetDBFileTry(), s_MoveDataToGarbage(), s_PcrPrimerCompare(), CCompartmentFinder< THit >::s_PNullRef(), CHitFilter< THit >::s_PNullRef(), s_ReadMapInfo(), s_RunBlast2NASeq(), s_SetIdList(), s_UpdateUpCoords(), CPhyloTreeWidget::SaveSettings(), CMergeTree::Search(), CCompareSeqRegions::SelectMatches(), CQueueDataBase::SendExactNotifications(), CAutoAddDesc::Set(), CHistogramGlyph::SetAxisRange(), CSearch< LEGACY, NHITS >::SetResult(), CwxTableListCtrl::SetSorterByColumns(), CTableColumnIdPanel::Show(), CAttribTableDelimitersPanel::Show(), CTableDelimitersPanel::Show(), CTableFixedWidthPanel::Show(), CQueueDataBase::StaleWNodes(), CDiscrepancyVisitorImpl< _Name >::Summarize(), CCompartmentFinder< THit >::sx_XFilter(), CScheduler_MT::TaskExecuted(), TestCdsFromLastBioseqOutsideAlign(), TestFeatInsideGap(), TestPointLocOutside(), CAlignResultsSet::ToBestSeqAlignSet(), CTempTrackProxy::TrackNotSet(), CAuthorAffiliationPanel::TransferDataFromWindow(), CtRNASubPanel::TransferDataFromWindow(), variation::CVariationUtil::TranslateNAtoAA(), CChangePhyloPropertyCmd::Unexecute(), CAttribTableDelimitersPanel::UpdateDelimiters(), CTableDelimitersPanel::UpdateDelimiters(), CTableAnnotDataSource::WriteAsn(), CNCBlobStorage::WriteBlobInfo(), CNCBlobStorage::WriteBlobStat(), variation_ref::CHgvsParser::x_abs_pos(), variation::CHgvsParser::x_abs_pos(), CNgAlignApp::x_AddAligners(), IPhyloTreeRender::x_AddCollapsedGeomNode(), CFeatureTableReader_Imp::x_AddNoteToFeature(), CObjectListTableModel::x_AdjustColToData(), CNgAligner::x_Align_Impl(), CSequenceUpdater::x_AttachFeaturesToNewSeq(), CUnculturedTool::x_CheckSuggestedFix(), CObjectListTableModel::x_ColIsLabel(), CInversionMergeAligner::x_CreateDiscAlignment(), CRenderingContext::x_CreateGlyphs(), CNgAlignApp::x_CreateNgAlignRun(), CBLASTSeqToolJob::x_CreateProjectItems(), CMergeTree::x_FindBefores_Up_Iter(), CSpaceShrinker::x_FindMetaCoord(), CUnorderedSplitter::x_FixAlignment(), CPdf::x_GetAlphaGraphicsState(), CUnculturedTool::x_GetCorrection(), CInstancedAligner::x_GetDistanceInstances(), CGlyphContainer::x_GetHistMsg(), CCompareSeqRegions::x_GetPutativeMatches(), CCompareSeqRegions::x_GetSelfLoc(), CAttribTableColumnIdPanel::x_GuessQualifiers(), CAlnMix::x_Init(), CBlastHitMatrix::x_InitGraphics(), CPdfGrabber::x_InitRenderer(), CSVGGrabber::x_InitRenderer(), CFileLoader::x_LoadAsnTextOrXml(), CFileLoader::x_LoadFile(), CSplign::x_LoadSequence(), CUnorderedSplitter::x_MakeAlignmentPairUnique(), CGencollIdMapper::x_Map_Down(), CGencollIdMapper::x_Map_Up(), CUpdateMultipleSeq_Input::x_MatchIdsAndAddUpdateToScope(), CMergeAligner::x_MergeAlignments(), CSpaceShrinker::x_MoveRecord(), variation::CHgvsParser::x_mut_inst(), CFeatTableDS::x_OnJobNotification(), CQueueDataBase::x_OptimizeStatusMatrix(), CBinsJob::x_PreFetchFtable(), CNetStorageHandler::x_PrintMessageRequestStart(), CGff2Reader::x_ProcessAlignmentsGff(), CXcompareAnnotsApplication::x_ProcessComparison(), CXcompareAnnotsApplication::x_ProcessMappingRange(), CXcompareAnnotsApplication::x_ProcessMappingRanges(), CNetScheduleHandler::x_ProcessMsgQueue(), CXcompareAnnotsApplication::x_ProcessSeqAlignSetFromFile(), CQueueDataBase::x_PurgeUnconditional(), variation::CHgvsParser::x_raw_seq_or_len(), CIdMapperTestApp::x_RecurseMapSeqAligns(), CMetaRegistry::x_Reload(), CSeqGraphicPane::x_Render(), CHitMatrixPane::x_RenderContent(), CInstancedAligner::x_RunAligner(), CInversionMergeAligner::x_RunMerger(), CMergeTree::x_Search_Iter(), CMergeTree::x_Search_Recur(), CFindOverlapTool::x_SelectCompatibleInputObjects(), CNGAlignTool::x_SelectCompatibleInputObjects(), variation_ref::CHgvsParser::x_seq_ref(), CMacroFunction_ApplyFeature::x_SetAdditionalFields(), CMacroFunction_ApplyFeature::x_SetLocation(), CViewGraphic::x_SetNonAsnInput(), CMacroFunction_ApplyFeature::x_ShouldAddRedundant(), variation_ref::CHgvsParser::x_ssr(), variation::CHgvsParser::x_ssr(), CFeatTrim::x_TrimLocation(), CFormatGuessEx::x_TryBed15(), CFormatGuessEx::x_TryWiggle(), CUpdateMultiSeq_Dlg::x_UpdateAlignmentPanel(), and CDataMiningPanel::x_UpdateWidgetAndTool().
◆ IsNull() [2/2]template<class C , class Locker >
Check if pointer is null – same effect as Empty().
Definition at line 1401 of file ncbiobj.hpp.
Referenced by CSplignFormatter::AsAlignmentText(), CMacroBioData_BioSourceIter::Begin(), CMacroBioData_PubdescIter::Begin(), CMacroBioData_SeqdescIter::Begin(), CMacroBioData_MolInfoIter::Begin(), CMacroBioData_StructCommentIter::Begin(), CMacroBioData_DBLinkIter::Begin(), CMacroBioData_AutodefOptsIter::Begin(), BOOST_AUTO_TEST_CASE(), CUpdateSeq_Input::CalculateAlignmentForUnitTest(), CBioTreeSelection::CBioTreeSelection(), CGencollIdMapper::CGencollIdMapper(), seqsubmit_split::SIdCompare::compare_seq(), Convert_Seq_annot_Seq_loc_All(), CSettingsSet::CSettingsSet(), CTopLevelSeqEntryContext::CTopLevelSeqEntryContext(), CBlastAligner::GenerateAlignments(), CSeqUtils::GetAnnotShown(), CHistogramGlyph::GetHistParams(), CFlatGoQVal::GetPubmedId(), CTableSelectionBioTreeContainer::GetSelection(), CGC_Sequence::GetSynonymSeq_id(), CFlatGoQVal::GetTextString(), GetTitle(), CTMS_SupportedAssemblies_Client::IsAssemblySupported(), CIntronGlyph::IsConsensus(), CMacroBioData_BioSourceIter::IsEnd(), CMacroBioData_PubdescIter::IsEnd(), CMacroBioData_SeqdescIter::IsEnd(), CMacroBioData_MolInfoIter::IsEnd(), NSnpGui::isFromVcf(), CCompareFeats::IsMatch(), CmRNACDSLinker::LinkByLabelAndLocation(), CMacroBioData_BioSourceIter::Next(), CMacroBioData_PubdescIter::Next(), CMacroBioData_SeqdescIter::Next(), CMacroBioData_MolInfoIter::Next(), CMacroBioData_StructCommentIter::Next(), CMacroBioData_DBLinkIter::Next(), CMacroBioData_AutodefOptsIter::Next(), CUpdateSeqPanel::OnRemoveAlignedFeaturesUpdated(), SFeats_OpLess::operator()(), CAnnotObjectType_Less::operator()(), SSerialObjectLessThan< T >::operator()(), CSourceModParser::SMod::operator<(), operator<<(), CCdsMatchInfo::Overlaps(), PackedSeqLocToMaskedQueryRegions(), s_GetAlignTitle(), s_GetSpliceSite(), s_LocationSpansMultipleSeqs(), CCompareSeqRegions::SelectMatches(), CSearch< LEGACY, NHITS >::WriteBioseqs(), CSeq_id_Resolver__ChrNamesFromGC::x_Create(), CFeatureGenerator::SImplementation::x_CreateCdsFeature(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CFeatureGenerator::SImplementation::x_CreateMrnaFeature(), CNaSeqlocHelper::x_GetCDS(), CFeatureGenerator::SImplementation::SMapper::x_GetLocFromSplicedExons(), CSplignApp::x_GetNextPair(), CCompareSeqRegions::x_GetPutativeMatches(), CReferenceItem::x_Init(), CUpdateSeqPanel::x_InitAlnMultiWidgetAndUpdateTypes(), CGencollIdMapper::x_Map_OneToOne(), CSeq_id_Resolver__ChrNamesFromGC::x_MapLoc(), CFlatGatherer::x_MergeEqualBioSources(), CFeatTableView::x_PreAttachToProject(), CXcompareAnnotsApplication::x_ProcessComparison(), and CAppHitFilter::x_ReadInputHits().
◆ Lock() [1/4] void CObjectCounterLocker::Lock ( const CObject * object ) const ◆ Lock() [2/4]template<class Interface >
Definition at line 559 of file ncbiobj.hpp.
◆ Lock() [3/4]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Lock the object and return reference to it.
If the refenced object is already deleted then return null reference.
Definition at line 2713 of file ncbiobj.hpp.
Referenced by CFeatureIndex::GetBestGene(), CFeatureIndex::GetBestParent(), CBioseqIndex::GetFeatureForProduct(), CFeatureIndex::GetOverlappingSource(), CNetScheduleHandler::GetQueue(), CFeatureIndex::GetSequence(), CBioseqIndex::HasOperon(), CAllOtherFeaturesTrack::NoSubtrackEver(), CSeqGraphicPane::OnSearchTip(), CSeqGraphicPane::OnTipAdded(), CAllOtherFeaturesTrack::ReinitNASubtracks(), CSeqGraphicPane::SelectLastHitObject(), CFeatureIndex::SetFetchFailure(), CAlnVecRow::THH_GetLayoutTrack(), CSeqGraphicPane::THH_GetLayoutTrack(), CSeqGraphicPane::TTHH_GetTooltip(), CSeqGraphicPane::TTHH_NeedTooltip(), CDeflineGenerator::x_AdjustProteinTitleSuffix(), CDeflineGenerator::x_AdjustProteinTitleSuffixIdx(), CBioseqIndex::x_DefaultSelector(), CBioseqIndex::x_InitFeats(), CBioseqIndex::x_InitGaps(), CAllOtherFeaturesTrack::x_OnAllJobsFinished(), CAllOtherFeaturesTrack::x_ReinitSubtracks(), CFeaturePanel::x_RenderFeatureGrid(), CFeaturePanel::x_RenderHairLineSelections(), CSeqGraphicPane::x_RenderTooltipConnector(), and CDeflineGenerator::x_SetPrefix().
◆ Lock() [4/4]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
◆ MonitorObjectType() void CObjectCounterLocker::MonitorObjectType ( const type_info & type ) static ◆ NCBI_EXCEPTION_DEFAULT() ◆ NotEmpty() [1/2]template<class C , class Locker >
bool CRef< C, Locker >::NotEmpty ( void ) const inlineCheck if CRef is not empty – pointing to an object and has a non-null value.
Definition at line 726 of file ncbiobj.hpp.
Referenced by CCdCore::AddCddDescr(), CWriteDB_Impl::AddColumnMetaData(), AddExceptionsToShortIntron(), CBuildDatabase::AddIds(), CIgBlastArgs::AddIgSequenceScope(), CAsyncMessageHandler::AddValidErrItem(), CCdCore::AlignAnnotsValid(), CDB_String::Assign(), CNewCleanup_imp::BasicCleanupSeqSubmit(), Blast_FindDustFilterLoc(), BlastFormatter_PreFetchSequenceData(), BookURLToBookRef(), BOOST_AUTO_TEST_CASE(), BrURLToBookRef(), CBlastDbDataLoader::CBlastDbDataLoader(), CBlastFormat::CBlastFormat(), CDB_FakeConnection::CDB_FakeConnection(), CDB_String::CDB_String(), CheckSeqIdInDD(), CkCdRegion(), CRawSeqDBSource::ClearSequence(), CWriteDB_Volume::Close(), CollectSubNames(), CSeq_loc_Conversion::Convert(), CopyBioseqWithType(), CopySeqIdsOfType(), CQueryFactoryInfo::CQueryFactoryInfo(), CBlastBioseqMaker::CreateBioseqFromId(), CWriteDB_Impl::CreateColumn(), CAlnVecMultiDataSource::CreateConsensus(), CGapsEditor::CreateGap(), CreateMimeFromBiostruc(), CTable2AsnContext::CreateSeqEntryFromTemplate(), CTable2AsnContext::CreateSubmitFromTemplate(), CRemoteBlastDbDataLoader::CRemoteBlastDbDataLoader(), CSeqDBOIDList::CSeqDBOIDList(), CVDBSeqInfoSrc::CVDBSeqInfoSrc(), Denseg2DenseDiagList(), DescrRefs(), CDBConnectionFactory::DispatchServerName(), embl_refs(), CDBConnectionFactory::CServiceInfo::Exclude(), CPsiBlastArgs::ExtractAlgorithmOptions(), CBlastDBExtractor::ExtractAsn1Bioseq(), CBlastDBExtractor::ExtractLinksInteger(), CBlastDBExtractor::ExtractMembershipInteger(), CAnnotationASN1::ExtractModels(), CObjMgr_QueryFactory::ExtractScopes(), CObjMgr_QueryFactory::ExtractUserSpecifiedMasks(), CImportStrategy::FetchData(), CPubFix::FetchPubPmId(), CdBlaster::FillOutSeqLoc(), CSimpleB2SWrapper::FillOutSeqLoc(), FilterDb_xref(), CFeatureTableReader::FindOpenReadingFrame(), CFindPub::fix_pub_equiv(), FixAnnot(), CPubFix::FixPub(), CPubFix::FixPubEquiv(), FormatAsAsn(), fta_build_ena_user_object(), fta_fix_orgref(), fta_fix_orgref_byid(), fta_get_dblink_user_object(), fta_parse_tpa_tsa_block(), fta_replace_org(), gb_refs_common(), CTextAlnReader::GenerateID(), get_art(), get_book(), get_error(), get_pat(), get_sub(), get_sub_gsdb(), get_thesis(), get_unpub(), get_whole_book(), GetAlignedPositions(), CCdCore::GetAlignmentLength(), CSeqDBVol::GetBioseq(), CObjMgr_RemoteQueryData::GetBioseqSet(), GetBioseqWithType(), CBlastQuerySourceOM::GetBlastSequence(), GetBlockLengths(), GetBlockStarts(), CCdCore::GetBlockStartsForRow(), CCdCore::GetCDBlockLengths(), GetCdRegionCB(), GetCitArticle(), GetCitBook(), GetCitBookOld(), GetCitGen(), GetCitLetThesis(), GetCitPatent(), GetCitSubmit(), CSeqDBImpl::GetDBTaxIds(), GetDescrEmblBlock(), GetEmblDescr(), GetEmblInstContig(), GetFirstOrLastDenDiag(), GetGBBlock(), GetGenBankDescr(), CBlastQuerySourceOM::GetGeneticCodeId(), CSeqDBVol::GetGiBounds(), CBioseqSeqInfoSrc::GetId(), CVDBSeqInfoSrc::GetId(), CBlastQuerySourceOM::GetLength(), AlignmentCollection::GetLowerBound(), CCdCore::GetLowerBound(), CBlastQuerySourceOM::GetMask(), CBlastQuerySourceOM::GetMaskedRegions(), GetMasterGIFromSeqAlign(), CFastaBioseqSource::GetNext(), CClusterDBSource::GetNext(), CMaskBDBReader::GetNextSequence(), CShortReadFastaInputSource::GetNextSequence(), CSeqDBGiListSet::GetNodeIdList(), CCdCore::GetNumBlocks(), CFastaIOWrapper::GetNumRead(), CCdCore::GetNumRows(), GetOrganismFrom_OS_OC(), TaxClient::GetOrgRef(), CSeqDBVol::GetPigBounds(), CRemoteBlast::GetPsiNumberOfIterations(), CBlastnAppArgs::GetQueryBatchSize(), CBlastnNodeArgs::GetQueryBatchSize(), CBlastpAppArgs::GetQueryBatchSize(), CBlastpNodeArgs::GetQueryBatchSize(), CBlastxAppArgs::GetQueryBatchSize(), CBlastxNodeArgs::GetQueryBatchSize(), CMagicBlastAppArgs::GetQueryBatchSize(), CPsiBlastAppArgs::GetQueryBatchSize(), CRPSBlastAppArgs::GetQueryBatchSize(), CRPSBlastNodeArgs::GetQueryBatchSize(), CRPSTBlastnAppArgs::GetQueryBatchSize(), CRPSTBlastnNodeArgs::GetQueryBatchSize(), CTblastnAppArgs::GetQueryBatchSize(), CTblastnNodeArgs::GetQueryBatchSize(), CTblastxAppArgs::GetQueryBatchSize(), CBlastnVdbAppArgs::GetQueryBatchSize(), CTblastnVdbAppArgs::GetQueryBatchSize(), CDeltaBlastAppArgs::GetQueryBatchSize(), CCluster::GetRefSeqOid(), GetRnaRef(), CRemoteBlast::GetSeqAlignSets(), CBlastQuerySourceOM::GetSeqId(), CCdCore::GetSeqIDForIndex(), CCdCore::GetSeqIDForRow(), CShowBlastDefline::GetSeqIdListString(), CCdCore::GetSeqIndex(), CBlastQuerySourceOM::GetSeqLoc(), GetSeqLocation(), CObjMgr_RemoteQueryData::GetSeqLocs(), CObjMgr_LocalQueryData::GetSequenceBlk(), CDBLB_ServiceMapper::GetServerOptions(), GetSprotDescr(), CBlastQuerySourceOM::GetStrand(), CSeqDBVol::GetStringBounds(), CSeq_id::GetStringDescr(), CBlastDatabaseArgs::GetSubjects(), CBlastQuerySourceOM::GetTitle(), CObjMgr_QueryFactory::GetTSeqLocVector(), AlignmentCollection::GetUpperBound(), CCdCore::GetUpperBound(), CSeqDBGiListSet::GetUserMaskOpts(), HasSeqIdOfType(), CSeqDBVol::IdsToOids(), ImpFeatPub(), InitializeRemoteBlast(), InitializeSubject(), CSimpleB2SWrapper::InitializeToDefaults(), IsConsensus(), CBlastBioseqMaker::IsProtein(), CSeqAnnotFromFasta::IsSeqAnnotValid(), CHeapScope::IsSet(), CDL_AssmInfoResponse_Base::IsSetData(), CPluginArg_Base::IsSetData(), CBlast4_seq_part_data_Base::IsSetData(), CGBProject_ver2_Base::IsSetData(), CLoaderDescriptor_Base::IsSetData(), CViewDescriptor_Base::IsSetData(), CUser_field_Base::IsSetData(), CID2_Reply_Get_Blob_Base::IsSetData(), CID2_Reply_ReGet_Blob_Base::IsSetData(), CID2S_Reply_Get_Chunk_Base::IsSetData(), CID2S_Reply_Get_Split_Info_Base::IsSetData(), CEntrez_general_Base::IsSetData(), CProject_Base::IsSetData(), CSeq_annot_Base::IsSetData(), CSeqEdit_Cmd_AddAnnot_Base::IsSetData(), CSeqEdit_Cmd_ChangeSeqAttr_Base::IsSetData(), CSeqEdit_Cmd_ChangeSetAttr_Base::IsSetData(), CSeqEdit_Cmd_RemoveAnnot_Base::IsSetData(), CSeqEdit_Cmd_ReplaceAnnot_Base::IsSetData(), CSeq_feat_Base::IsSetData(), CSeqFeatXref_Base::IsSetData(), CVariation_ref_Base::IsSetData(), CScaled_int_multi_data_Base::IsSetData(), CScaled_real_multi_data_Base::IsSetData(), CSeqTable_column_Base::IsSetData(), CSeq_submit_Base::IsSetData(), CVariation_Base::IsSetData(), pub_report::CUnpublishedReport::IsSetDate(), CPluginLibInfo_Base::IsSetInfo(), CWorkspaceFolder_Base::IsSetInfo(), CBlast4_get_search_info_reply_Base::IsSetInfo(), CBlast4_get_search_info_request_Base::IsSetInfo(), CProjectFolder_Base::IsSetInfo(), CID2S_Bioseqs_Info_Base::IsSetInfo(), AlignmentCollection::IsStruct(), CPriorityNode::IsTree(), journal(), IBISAnnotateDialog::LaunchIbisWebPage(), CmRNACDSLinker::LinkSelectedFeatures(), CWriteDB_Volume::ListFiles(), LoadStructureViaCache(), CMultiReader::LoadTemplate(), CBlastFormat::LogBlastSearchInfo(), LogCmdOptions(), CTblastnNode::Main(), CMagicBlastThread::Main(), CThreadPool_ThreadImpl::Main(), CLocalDbAdapter::MakeSeqInfoSrc(), CLocalDbAdapter::MakeSeqSrc(), CCdCore::MapPositionToOtherRow(), MaskedQueryRegionsToPackedSeqLoc(), CSeqGridTableNav::NavigateToTextViewPosition(), CFrameworkDemoGUI::OnRestoreLayoutUpdate(), CFastaReader::OpenMask(), SBlast4ParamFinder::operator()(), CWinMaskUtil::CInputBioseq_CI::operator++(), CSeqDBVol::PigToOid(), PrintASN1(), PrintSAMHeader(), CTbl2AsnApp::ProcessHugeFile(), CFeatureTableReader::ReadProtein(), CFastaReader::ReadSet(), CWriteDB_Volume::RenameFileIndex(), CWriteDB_Volume::RenameSingle(), CObjectManager::RevokeDataLoader(), CBl2Seq::Run(), CLocalBlast::Run(), CIgBlast::Run(), CPsiBlastImpl::Run(), CBl2Seq::RunEx(), CLocalVDBBlast::RunThreadedSearch(), s_BuildArchiveAll(), s_CombineDustMasksWithUserProvidedMasks(), s_DupIdsBioseq(), s_DupIdsRaw(), s_ImportSearchStrategy(), s_InitializeExportStrategy(), s_InitializeSubject(), s_MakeEmptyResults(), s_MultiSeqGetAvgLength(), s_MultiSeqGetIsProt(), s_MultiSeqGetMaxLength(), s_MultiSeqGetNextChunk(), s_MultiSeqGetNumSeqs(), s_MultiSeqGetSeqLen(), s_MultiSeqGetSequence(), s_PreProcessAccessionsForDBv5(), CHitFilter< THit >::s_RunGreedy(), s_SeqAlignToXMLHit(), s_SetSplitQuerySeqInterval(), s_SplitAlignVectorBySubjects(), CPsiBlastApp::SavePssmToFile(), CBlastNode::SendMsg(), SetAlignedResiduesOnSequence(), CSimpleB2SWrapper::SetCompoAdjustMode(), CSimpleB2SWrapper::SetDbLength(), CSimpleB2SWrapper::SetEffSearchSpace(), CSimpleB2SWrapper::SetEValueThreshold(), CBlastTabularInfo::SetFields(), CSimpleB2SWrapper::SetHitlistSize(), CSimpleB2SWrapper::SetMatrixName(), SetMinimumPub(), CBlastAppArgs::SetOptions(), CSimpleB2SWrapper::SetPercIdThreshold(), CSimpleB2SWrapper::SetSeq(), SimpleSeqLocFromBioseq(), CBlastQuerySourceOM::Size(), SortAndFetchSeqData(), CSeqDB_FilterTree::Specialize(), SPFeatGeneral(), CQuerySplitter::Split(), fix_pub::SplitMedlineEntry(), CHitFilter< THit >::sx_TestAndMerge(), CHitFilter< THit >::sx_TM(), CPriorityTaxNodes::TaxIdsToCddOrgRefSet(), BlockModel::toString(), CSeqDBVol::UnLease(), CTable2AsnContext::UpdateTaxonFromTable(), CTable2AsnValidator::ValCollect(), CSeq_id::WriteAsFasta(), CWriteDB_Volume::WriteSequence(), CCachedSequence::x_AddFullSeq_data(), CBlastQuerySourceOM::x_AutoDetectGeneticCodes(), CBlastQuerySourceOM::x_CalculateMasks(), CSeqDBImpl::x_CheckOrFindOID(), CQuerySplitter::x_ComputeChunkRanges(), CQuerySplitter::x_ComputeQueryIndicesForChunks(), CIgBlastnAppArgs::x_CreateOptionsHandle(), CIgBlastpAppArgs::x_CreateOptionsHandle(), CBlastnVdbAppArgs::x_CreateOptionsHandle(), CBlastAppArgs::x_CreateOptionsHandleWithTask(), CQuery::CField::x_Detach(), CQuerySplitter::x_ExtractCScopesAndMasks(), CPsiBlastInputClustalW::x_ExtractQueryForPssm(), CPsiBlastInputData::x_ExtractQueryForPssm(), CCddInputData::x_ExtractQueryForPssm(), CBlastFastaInputSource::x_FastaToSeqLoc(), CSeqDBVol::x_FilterHasId(), CBlastServices::x_FindDbInfoFromAvailableDatabases(), CIgBlast::x_FindDJ(), CIgBlast::x_FindDJAln(), CDeltaBlast::x_FindDomainHits(), CCIGAR_Formatter::x_FormatAlignmentRows(), CRemoteBlast::x_GetGSRR(), CSeqDBVol::x_GetHdrAsn1(), CSDB_ConnectionParam::x_GetPassword(), CImportStrategy::x_GetProgramOptionIntegerList(), CRemoteBlast::x_GetStringFromSearchInfoReply(), CRemoteBlast::x_GetSubjects(), CSeq_annot_Info::x_HasSNP_annot_Info(), CSeqDBVol::x_HaveNegativeList(), CBlastDbMetadata::x_InitBlastDb(), CBlastDBExtractor::x_InitDefline(), CSearchDatabase::x_InitializeDb(), CPhyTreeFormatter::x_InitTreeLabels(), CBuffer_DataLoader::x_LoadData(), CMagicBlastApp::x_LogBlastSearchInfo(), CDBConnectionFactory::x_LogConnection(), CObjMgr_QueryFactory::x_MakeLocalQueryData(), CObjMgr_QueryFactory::x_MakeRemoteQueryData(), CSeqDBVol::x_OpenGiFile(), CSeqDBVol::x_OpenPigFile(), CSeqDBVol::x_OpenStrFile(), CSeqDBVol::x_OpenTiFile(), CGFFReader::x_PlaceFeature(), CBlastDBCmdApp::x_PrintBlastDatabaseInformation(), CBlastDBCmdApp::x_PrintBlastDatabaseTaxInformation(), CBlastTabularInfo::x_PrintSubjectAllTitles(), CBlastTabularInfo::x_PrintSubjectTitle(), CExportStrategy::x_Process_SearchDb(), CIgBlast::x_ProcessDGeneResult(), CBlastDBCmdApp::x_ProcessEntry(), CBlastVdbCmdApp::x_ProcessSearchRequest(), CWriteDB_Impl::x_Publish(), CShortReadFastaInputSource::x_ReadFastaOrFastq(), CASN1InputSourceOMF::x_ReadFromSingleFile(), CASN1InputSourceOMF::x_ReadFromTwoFiles(), CShortReadFastaInputSource::x_ReadFromTwoFiles(), CSraInputSource::x_ReadOneSeq(), CRemoteSeqSearch::x_RemoteBlast(), CAlnVecRow::x_RenderSequence(), CBuildDatabase::x_ResolveGis(), CSeqDBGiListSet::x_ResolveNegativeList(), CSeqDBGiListSet::x_ResolvePositiveList(), CMagicBlast::x_Run(), CPsiBlastApp::x_RunLocalPsiBlastIterations(), CTblastnApp::x_RunMTBySplitDB(), CDBLBClientApp::x_RunWhatIs(), CBlastKmer::x_SearchMultipleQueries(), CBlastTabularInfo::x_SetSubjectIds(), CBlastTabularInfo::x_SetTaxInfo(), CBlastTabularInfo::x_SetTaxInfoAll(), CSeqDBOIDList::x_Setup(), CSeqDBVol::x_StringToOids(), CSequenceDataTester::x_TestSingleSequence_Local(), CSequenceDataTester::x_TestSingleSequence_Remote(), CTracebackSearchTestFixture::x_Traceback(), CFormatGuessEx::x_TryRmo(), CSeqDBVol::x_UnleaseGiFile(), CSeqDBVol::x_UnleasePigFile(), CSeqDBVol::x_UnleaseStrFile(), CSeqDBVol::x_UnleaseTiFile(), CPsiBlastImpl::x_Validate(), CSplitQueryTestFixture::x_ValidateLocalQueryData(), CBlastInputReader::x_ValidateMoleculeType(), CMultiReader::xApplyTemplate(), CGff2Writer::xAssignFeatureAttributeCodeBreak(), xgbint_ver(), xgbloc_ver(), CEmbl2Asn::xGetEntry(), CGenbank2Asn::xGetEntry(), XMLGetDescr(), XMLGetEMBLBlock(), XMLGetGBBlock(), CFeatureTableReader::xMoveCdRegions(), CTbl2AsnApp::xProcessOneFile(), seqsubmit_split::CSeqSubSplitter::xTryProcessSeqEntry(), CTaxonomyUpdater::xUpdateOrgTaxname(), CBlastNode::~CBlastNode(), CBuildDatabase::~CBuildDatabase(), CBlockingQueue_ForServer::CCompletingHandle::~CCompletingHandle(), CBlockingQueue< CRef< CStdRequest > >::CCompletingHandle::~CCompletingHandle(), CSeqDBImpl::~CSeqDBImpl(), CSplitQueryTestFixture::~CSplitQueryTestFixture(), and CWrapperUpper::~CWrapperUpper().
◆ NotEmpty() [2/2]template<class C , class Locker >
Check if CConstRef is not empty – pointing to an object and has a non-null value.
Definition at line 1392 of file ncbiobj.hpp.
Referenced by AddExceptionsToShortIntron(), CBuildDatabase::AddSequences(), CRmvCddFeatDbxref::apply_to(), BlastSetupPreliminarySearchEx(), BOOST_AUTO_TEST_CASE(), CAnnotationASN1::CImplementationData::create_internal_feature(), CFlatFileGenerator::Generate(), CObjMgrFree_RemoteQueryData::GetBioseqSet(), CBioseqSeqInfoSrc::GetId(), CBlastDbDataLoader::GetLoaderNameFromArgs(), GetLocusTagForFeature(), CMatePairGlyph::GetObject(), GetProteinWeights(), CObjMgrFree_LocalQueryData::GetQueryInfo(), CReferenceItem::GetReftype(), CObjMgrFree_RemoteQueryData::GetSeqLocs(), CObjMgrFree_LocalQueryData::GetSequenceBlk(), GetTitle(), CBlastQuerySourceOM::GetTitle(), GetXrpForOverlap(), SAnnotSelector::HasLimit(), CBioseqContext::IsEncode(), CVariationNormalization::isFullyShifted(), CBlob_Info::IsSetAnnotInfo(), CReferenceItem::IsSetAuthors(), CReferenceItem::IsSetBook(), CValidErrItem::IsSetContext(), CReferenceItem::IsSetDate(), CReferenceItem::IsSetGen(), CReferenceItem::IsSetJournal(), CValidErrItem::IsSetObject(), CFlatItem::IsSetObject(), CReferenceItem::IsSetPatent(), CReferenceItem::IsSetSub(), NSnp::IsSnp(), CSplitBlob::IsSplit(), CId1FetchApp::LookUpGI(), CLocalDbAdapter::MakeSeqInfoSrc(), CLocalDbAdapter::MakeSeqSrc(), CBlastFormatUtil::PrintAsciiPssm(), PrintSAM(), PrintTabular(), CBlastDemoApplication::Run(), s_BuildArchiveAll(), s_GetModelEvidance(), s_TitleFromProtein(), s_TitleFromSegment(), CDeltaBlastApp::SavePssmToFile(), CReferenceItem::SetRemark(), CPssmEngine::SetUngappedStatisticalParams(), SetupSubjects_OMF(), pub_report::CSkipSeqIdHook::SkipClassMember(), CFastaOstream::WriteSequence(), CLinkUtils::x_AddDbxrefFeatureLinks(), CFeatureItem::x_AddQuals(), CFeatureItem::x_AddQualsIdx(), CDeflineGenerator::x_AdjustProteinTitleSuffix(), CDeflineGenerator::x_AdjustProteinTitleSuffixIdx(), CIgBlast::x_AnnotateC(), CIgBlast::x_AnnotateDJ(), CIgBlast::x_AnnotateJ(), CMessageSlot::x_CanShowPopup(), CFlatGatherer::x_CollectBioSourcesOnBioseq(), CWriteDB_Impl::x_ComputeSeqLength(), CWriteDB_Impl::x_CookSequence(), CPsiBlastInputData::x_ExtractQueryForPssm(), CCddInputData::x_ExtractQueryForPssm(), CReferenceItem::x_GatherInfo(), CSourceItem::x_GatherInfo(), CFastaOstream::x_GetBestId(), x_GetSegSeqInfoViaCDS(), CBlastTracebackSearch::x_Init(), CBioseqIndex::x_InitSource(), CObjMgrFree_QueryFactory::x_MakeLocalQueryData(), CObjMgrFree_QueryFactory::x_MakeRemoteQueryData(), CBlastTabularInfo::x_PrintQueryAndDbNames(), CDeflineGenerator::x_SetBioSrc(), CDeflineGenerator::x_SetTitleFromProtein(), CDeflineGenerator::x_SetTitleFromProteinIdx(), CFastaOstream::x_WriteAsFasta(), and CFeatTableEdit::xGenerate_mRNA_Product().
◆ NotNull() [1/2]template<class C , class Locker >
bool CRef< C, Locker >::NotNull ( void ) const inlineCheck if pointer is not null – same effect as NotEmpty().
Definition at line 744 of file ncbiobj.hpp.
Referenced by CThreadPool_Impl::Abort(), CCachedAssembly::Assembly(), BOOST_AUTO_TEST_CASE(), CThreadPool_ThreadImpl::CancelCurrentTask(), CBioseqContext::CanGetMaster(), CBioseqContext::CanGetTLSeqEntryCtx(), CFeaturePanel::ConfigureTracks(), CAnnotationASN1::CImplementationData::create_ModelEvidence_user_object(), CNCBlobStorage::DeleteBlobInfo(), CPrefetchRequest::Execute(), CTMS_DisplayTrack_Client::FetchRawStream(), CNCBlobAccessor::Finalize(), g_CreateConversion(), g_CreateDeletion(), g_CreateDelins(), g_CreateDuplication(), g_CreateIdentity(), g_CreateInsertion(), g_CreateInversion(), g_CreateMicrosatellite(), g_CreateVarref(), CGencollSvc::GetAssmAccs(), CNCBlobAccessor::GetCurBlobCreateTime(), CNCBlobAccessor::GetCurCreateId(), CNCBlobAccessor::GetCurCreateServer(), CNCBlobAccessor::GetValidServer(), CNCBlobAccessor::IsBlobExists(), CVectorScreen::IsDbAvailable(), CInfoRequestorLock::IsLocked(), CNCBlobAccessor::IsValid(), CAliToSeq_align::MakeSeq_align(), CDBConnectionFactory::MakeValidConnection(), CGencollIdMapper::Map(), CNetScheduleHandler::OnClose(), CNetStorageHandler::OnClose(), CNetScheduleHandler::OnMessage(), CNetStorageHandler::OnOverflow(), CNetStorageHandler::OnRead(), CNetScheduleHandler::OnTimeout(), CNetStorageHandler::OnTimeout(), CConnValidatorCoR::Push(), CDBServiceMapperCoR::Push(), CDRefresher::refresh(), CThreadPool_ServiceThread::RequestToFinish(), CSplign::Run(), CMergeTree::Search(), CVariation_ref::SetDuplication(), CVariation_ref::SetIdentity(), CPhyloTreeWidget::SetScheme(), CHitFilter< THit >::sx_TM(), testResultAlignments(), CTaxonomyUpdater::UpdateOrgFromTaxon(), CSelectionVisitor::UpdateSelection(), CNCBlobStorage::WriteBlobInfo(), CSnpTrack::x_AddSnpsLayout(), CExpiredCleaner::x_DeleteData(), CExpiredCleaner::x_DeleteNextData(), COpenViewDlg::x_DoTransition(), CNetStorageHandler::x_GetObject(), CNetScheduleHandler::x_HandleSocketErrorOnResponse(), CAlignSpanView::x_InitWidget(), CNetScheduleHandler::x_NeedCmdLogging(), CAppJobEventTranslator::x_NotifyObservers(), CNetStorageHandler::x_OnData(), CRWLockHolder::x_OnLockAcquired(), CRWLockHolder::x_OnLockReleased(), CNetStorageHandler::x_OnSocketWriteError(), CNetScheduleHandler::x_PrepareWriteBuffer(), CMergeTree::x_Print(), CNetScheduleHandler::x_PrintCmdRequestStart(), CNetScheduleHandler::x_PrintCmdRequestStop(), CNetStorageHandler::x_PrintMessageRequestStart(), CNetStorageHandler::x_PrintMessageRequestStop(), CNetStorageHandler::x_ProcessCreate(), CNetScheduleHandler::x_ProcessHealth(), CNetStorageHandler::x_ProcessRead(), CNetStorageHandler::x_ProcessReconfigure(), CNetStorageHandler::x_ProcessRelocate(), CYieldingRWLock::x_ReleaseLock(), CMergeTree::x_Search_Recur(), CNetScheduleHandler::x_SetCmdRequestStatus(), CNetStorageHandler::x_SetCmdRequestStatus(), CNetScheduleHandler::x_SetConnRequestStatus(), CNetStorageHandler::x_SetConnRequestStatus(), CNetScheduleHandler::x_SetRequestContext(), CSnpTrack::x_UpdateData(), and CNetScheduleHandler::x_WriteMessage().
◆ NotNull() [2/2]template<class C , class Locker >
Check if pointer is not null – same effect as NotEmpty().
Definition at line 1410 of file ncbiobj.hpp.
Referenced by BOOST_AUTO_TEST_CASE(), CGencollIdMapper::CanMeetSpec(), CConnTest::CheckFWConnections(), CPrefetchComplete< CBioseq_Handle >::Execute(), CAsnCacheStore::GetSeqIds(), CGencollIdMapper::GetSynonyms(), CRPCClient_Base::IsCanceled(), CMemoryByteSourceReader::IsMultiPart(), CGencollIdMapper::Map(), CHgvsReader::ReadSeqAnnot(), CConn_IOStream::SetCanceledCallback(), CConn_IOStream::sx_IsCanceled(), CGencollIdMapper::x_CanSeqMeetSpec(), CSeq_id_Resolver__ChrNamesFromGC::x_Create(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CGencollIdMapper::x_FillGpipeTopRole(), CGencollIdMapper::x_FindParentSequence(), CCIGAR_Formatter::x_FormatDensegRows(), CNaSeqlocHelper::x_GetCDS(), CGencollIdMapper::x_GetIdFromSeqAndSpec(), CGencollIdMapper::x_Init(), CGencollIdMapper::x_IsFuzzyIdInAssembly(), CGencollIdMapper::x_MakeSpecForSeq(), and CDataTrack::x_OnJobFailed().
◆ ObjectStateCanBeDeleted() bool CObject::ObjectStateCanBeDeleted ( TCount count ) inlinestaticprivate ◆ ObjectStateIsAllocatedInPool() bool CObject::ObjectStateIsAllocatedInPool ( TCount count ) inlinestaticprivate ◆ ObjectStateReferenced() bool CObject::ObjectStateReferenced ( TCount count ) inlinestaticprivate ◆ ObjectStateReferencedOnlyOnce() bool CObject::ObjectStateReferencedOnlyOnce ( TCount count ) inlinestaticprivate ◆ ObjectStateUnreferenced() bool CObject::ObjectStateUnreferenced ( TCount count ) inlinestaticprivate ◆ ObjectStateValid() ◆ operator const T &() ◆ operator const TObjectType *()template<class C , class Locker >
◆ operator delete() [1/3] void CObject::operator delete ( void * ptr ) ◆ operator delete() [2/3] ◆ operator delete() [3/3] void CObject::operator delete ( void * ptr, void * place ) ◆ operator delete[]() void CObject::operator delete[] ( void * ptr )Define delete[] operator for memory deallocation.
Definition at line 628 of file ncbiobj.cpp.
◆ operator new() [1/3] void * CObject::operator new ( size_t size ) ◆ operator new() [2/3] ◆ operator new() [3/3] void * CObject::operator new ( size_t size, void * place ) ◆ operator new[]() void * CObject::operator new[] ( size_t size ) ◆ operator T&() ◆ operator TObjectType *() [1/2]template<class C , class Locker >
◆ operator TObjectType *() [2/2]template<class C , class Locker >
◆ operator!() [1/2]template<class C , class Locker >
bool CRef< C, Locker >::operator! ( void ) const inline ◆ operator!() [2/2]template<class C , class Locker >
◆ operator!=() [1/5]template<class T , class L >
◆ operator!=() [2/5]template<class T , class L >
Template operator != function for CRef objects – rhs is null.
Definition at line 1821 of file ncbiobj.hpp.
References r1.
◆ operator!=() [3/5]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ operator!=() [4/5]template<class T , class L >
◆ operator!=() [5/5]template<class T , class L >
Template operator != function for CRef objects – lhs is null.
Definition at line 1829 of file ncbiobj.hpp.
References r1.
◆ operator*() [1/3]template<class C , class Locker >
◆ operator*() [2/3]template<class C , class Locker >
◆ operator*() [3/3]template<class C , class Locker >
◆ operator+() [1/2]template<class C , class Locker >
void CRef< C, Locker >::operator+ ( int ) const private ◆ operator+() [2/2]template<class C , class Locker >
◆ operator-() [1/4]template<class C , class Locker >
void CRef< C, Locker >::operator- ( int ) const private ◆ operator-() [2/4]template<class C , class Locker >
◆ operator-() [3/4]template<class C , class Locker >
◆ operator-() [4/4]template<class C , class Locker >
◆ operator->() [1/3]template<class C , class Locker >
◆ operator->() [2/3]template<class C , class Locker >
◆ operator->() [3/3]template<class C , class Locker >
◆ operator=() [1/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Move assignment operator for references of derived types.
Definition at line 2267 of file ncbiobj.hpp.
◆ operator=() [2/35]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Move assignment operator for const references of derived types.
Definition at line 1603 of file ncbiobj.hpp.
◆ operator=() [3/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Move assignment operator for references of derived types.
Definition at line 2124 of file ncbiobj.hpp.
◆ operator=() [4/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Move assignment operator for assigning a reference to a const reference.
Definition at line 2286 of file ncbiobj.hpp.
◆ operator=() [5/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Assignment operator for references of derived types.
Definition at line 2251 of file ncbiobj.hpp.
◆ operator=() [6/35]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Assignment operator for const references of derived types.
Definition at line 1578 of file ncbiobj.hpp.
◆ operator=() [7/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Assignment operator for references of derived types.
Definition at line 2108 of file ncbiobj.hpp.
◆ operator=() [8/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Assignment operator for assigning a reference to a const reference.
Definition at line 2277 of file ncbiobj.hpp.
◆ operator=() [9/35] ◆ operator=() [10/35] ◆ operator=() [11/35]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Assignment operator for references of derived types.
Definition at line 912 of file ncbiobj.hpp.
◆ operator=() [12/35]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Assignment operator for assigning a reference of derived type.
Definition at line 1613 of file ncbiobj.hpp.
◆ operator=() [13/35] ◆ operator=() [14/35]template<class C , class Locker >
◆ operator=() [15/35]template<class C , class Locker >
◆ operator=() [16/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Assignment operator for references.
Definition at line 2099 of file ncbiobj.hpp.
◆ operator=() [17/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Assignment operator for references.
Definition at line 2242 of file ncbiobj.hpp.
◆ operator=() [18/35]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Move assignment operator for references of derived types.
Definition at line 936 of file ncbiobj.hpp.
◆ operator=() [19/35]template<class C , class Locker >
template<class TDerived , class = typename enable_if_derived<TDerived>::type>
Move assignment operator for assigning a reference of derived type.
Definition at line 1622 of file ncbiobj.hpp.
◆ operator=() [20/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Assignment operator with right hand side set to ENull.
Definition at line 2140 of file ncbiobj.hpp.
◆ operator=() [21/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Assignment operator with right hand side set to ENull.
Definition at line 2302 of file ncbiobj.hpp.
◆ operator=() [22/35]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Assignment from ENull pointer.
Definition at line 2841 of file ncbiobj.hpp.
◆ operator=() [23/35]template<class C , class Locker >
Assignment operator with right hand side set to ENull.
Definition at line 952 of file ncbiobj.hpp.
◆ operator=() [24/35]template<class C , class Locker >
Assignment operator with right hand side set to ENull.
Definition at line 1638 of file ncbiobj.hpp.
◆ operator=() [25/35]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ operator=() [26/35]template<class C , class Locker >
Assignment operator for references with right hand side set to a pointer.
Definition at line 945 of file ncbiobj.hpp.
◆ operator=() [27/35]template<class C , class Locker >
Assignment operator for const references with right hand side set to a pointer.
Definition at line 1631 of file ncbiobj.hpp.
◆ operator=() [28/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Assignment operator for references with right hand side set to a pointer.
Definition at line 2133 of file ncbiobj.hpp.
◆ operator=() [29/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Assignment operator for references with right hand side set to a pointer.
Definition at line 2295 of file ncbiobj.hpp.
◆ operator=() [30/35]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Assignment from pointer to other object.
Definition at line 2762 of file ncbiobj.hpp.
◆ operator=() [31/35]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Assignment from pointer to another interface.
Definition at line 2848 of file ncbiobj.hpp.
◆ operator=() [32/35]template<class C , class Locker >
Move assignment operator for references.
Definition at line 919 of file ncbiobj.hpp.
◆ operator=() [33/35]template<class C , class Locker >
Move assignment operator for const references.
Definition at line 1586 of file ncbiobj.hpp.
◆ operator=() [34/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Move assignment operator for references.
Definition at line 2115 of file ncbiobj.hpp.
◆ operator=() [35/35]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Move assignment operator for references.
Definition at line 2258 of file ncbiobj.hpp.
◆ operator==() [1/5]template<class T , class L >
◆ operator==() [2/5]template<class T , class L >
Comparison operators for CRef<> and CConstRef<> with ENull.
Template operator == function for CRef objects – rhs is null.
Definition at line 1805 of file ncbiobj.hpp.
References r1.
◆ operator==() [3/5]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ operator==() [4/5]template<class T , class L >
◆ operator==() [5/5]template<class T , class L >
Template operator == function for CRef objects – lhs is null.
Definition at line 1813 of file ncbiobj.hpp.
References r1.
◆ Ref()Helper functions to get CRef<> and CConstRef<> objects.
Template function for conversion of object pointer to CRef
Definition at line 2015 of file ncbiobj.hpp.
Referenced by CObjectManager::AcquireSharedSeq_annot(), CTSE_ScopeInfo::AddAnnot(), CMatchmRNA::AddCDS(), CTSE_ScopeInfo::AddEntry(), CMatchCDS::AddmRNA(), CCleanup::AddNcbiCleanupObject(), CCleanup::AddPartialToProteinTitle(), CHttpFormData::AddProvider(), CPrefetchThreadOld::AddRequest(), CBioseq_Base_Info::AddSeqdesc(), CDataSource::AddStaticTSE(), CThreadPool_Impl::AddTask(), AdjustGene(), CFeatTrim::Apply(), CReverseAuthorNames::ApplyToPubdesc(), ArgToSeq_id(), Assign3primeUTRSite(), Assign5primeUTRSite(), AssignNtRemoteLocation(), CScope_Impl::AttachAnnot(), CSeq_entry_EditHandle::AttachAnnot(), CScope_Impl::AttachEntry(), CBioseq_set_EditHandle::AttachEntry(), CDataSource_ScopeInfo::AttachTSE(), CDiscrepancyVisitorImpl< _Name >::Autofix(), CPSGL_RequestTracker::BackgroundProcessItemCallback(), CPSGL_RequestTracker::BackgroundProcessReplyCallback(), CAutogeneratedCleanup::BasicCleanupSeqAnnot(), CAutogeneratedCleanup::BasicCleanupSeqFeat(), CNewCleanup_imp::BasicCleanupSeqIds(), BOOST_AUTO_TEST_CASE(), BuildAlignDataSource(), seqsubmit_split::CSeqSubmitHelper::BuildObject(), seqsubmit_split::CSeqEntryHelper::BuildObject(), CAnnotObject_Info::CAnnotObject_Info(), CDesktopDataBuilder::CDesktopDataBuilder(), CFastaReader::CFastaReader(), CWriteUtil::ChangeToPackedInt(), CId2ReaderBase::CId2ReaderBase(), CMiscSeqTableColumn::ClearValCmd(), CAgpRow::Clone(), CVariationNormalizationDelIns::ConvertExpandedInsertionToDelIns(), CSeq_entry_EditHandle::CopyAnnot(), CBioseq_set_EditHandle::CopyEntry(), CSeq_entry_EditHandle::CopySeq(), CSeq_entry_EditHandle::CopySet(), CBlobSplitterImpl::CopySkeleton(), CpSeqId(), CpSeqIdAcOnly(), CPSGL_GetBlob_Processor::CPSGL_GetBlob_Processor(), CDiscrepancyVisitorImpl< _Name >::Create(), CreateEntryBioseq(), CreateResultIfNull(), CProtSeqlocHelper::CreateSeqloc(), CSeqMap::CreateSeqMapForBioseq(), CDeltaHelper::CreateSSR(), CEditObjectSubmit_block::CreateWindow(), CSortedBioseqs::CSortedBioseqs(), CSortedSeq_ids::CSortedSeq_ids(), CSplignApp::CSplignApp(), CPSGL_RequestTracker::CBackgroundTask::DisconnectFromTracker(), CGraphTrack::Drop(), CQueryFuncAssignment::Evaluate(), CPrefetchRequest::Execute(), CCleanup::ExtendStopPosition(), CTrackConfigManager::CTrackIndex::FindTrackById(), CFindPub::fix_pub_equiv(), FixMixLoc(), objects::CFixSuspectProductName::FixSuspectProductNames(), CHugeAsnReader::FlattenGenbankSet(), CHugeFileProcess::ForEachEntry(), CTMgr_DTrackId::FromTrackIdString(), fta_get_acc_minmax_strand(), g_ConvertDeltaToRawSeq(), g_CreateConversion(), g_CreateDeletion(), g_CreateDelins(), g_CreateDuplication(), g_CreateFrameshift(), g_CreateIdentity(), g_CreateInsertion(), g_CreateInversion(), g_CreateMicrosatellite(), g_CreateMissense(), g_CreateMNP(), g_CreateSNV(), g_CreateSpecialSeqfeat(), g_CreateVarref(), g_InstantiateMissingProteins(), g_PostprocessErrors(), CTextAlnReader::GenerateID(), CLoadInfoMap< Key, Info >::Get(), get_full_date(), CCacheWithLock< Key, Value, Less >::get_lock(), CBinaryRangeCacheWithLock< Position, Value >::get_lock(), CCSraRefSeqIterator::GetAlignCountAtPos(), CCSraRefSeqIterator::GetAlnOverStarts(), CCSRADataLoader_Impl::GetBlobId(), CWGSDataLoader_Impl::GetBlobIdOnce(), SColumn::GetColumn(), GetCommandFromApplyObject(), CScope_Impl::GetConstDS(), CPhrap_Sequence::GetContig(), CCSraRefSeqIterator::GetCoverageGraph(), CGraphCache< TData >::GetData(), CMappingRange::GetDstId(), CScope_Impl::GetEditDataSource(), CScope_Impl::GetEditDS(), CCSraRefSeqIterator::GetEstimatedNumberOfAlignments(), CGapAnalysis::GetGapLengthSummary(), CGencollSvc::GetInstance(), CObjectManager::GetInstance(), CIntronOffsetHelper::GetIntronOffset(), CPostProcessUtils::GetLiteralAtLoc(), CBioseq_ScopeInfo::GetLock(), CCreatedFeat_Ref::GetMappedLocation(), CSeqUtils::GetMappingInfoFromLocation(), CNormalizeVariant::GetNormalizedIdentity(), CVDBCacheWithExpiration::CSlot::GetObject(), CTable2AsnContext::GetOrgRef(), CProSplignParams::GetOutputOptions(), CPSGL_RequestTracker::GetProcessor(), CPSGL_ResultGuard::GetProcessor(), CDiscrepancyContext::GetProduct(), CPhrap_Sequence::GetRead(), CCSRADataLoader_Impl::GetReadsBlobId(), CCSraRefSeqIterator::GetRefLiterals(), GetReplacementCommand(), CMiscSeqTableColumn::GetReplacementCommand(), CSNPDbFeatIterator::GetSeq_feat(), CAlnReader::GetSeqEntry(), GetSeqLocation(), CGraphOverlayFactory::GetSettings(), CGraphTrackFactory::GetSettings(), CGeneModelFactory::GetSettings(), CIntronOffsetHelper::GetStartIntronOffset(), CIntronOffsetHelper::GetStopIntronOffset(), CFeatGlyph::GetTooltip(), CPSGL_Queue::GetTracker(), CAsn2FastaApp::HandleSeqEntry(), CAsn2FlatApp::HandleSeqId(), CScopeTransaction_Impl::HasScope(), PT::CProjectFolder::Initialize(), CTSE_Chunk_Info::Load(), CHugeAsnReader::LoadBioseq(), CPSGDataLoader_Impl::LoadChunk(), LoadFeat(), CHugeAsnReader::LoadSeqEntry(), CCleanupHugeAsnReader::LoadSeqEntry(), CValidator::MakeEmptyCache(), CSeq_loc_CI_Impl::MakeFuzz(), MakeId(), CBlobSplitterImpl::MakeID2Chunk(), CHugeFile::MakeObjStream(), MakeResult(), CBlobSplitterImpl::MakeSeq_annot(), CGencollIdMapperAdapter::Map(), CGencollIdMapperAdapter::MapObject(), CPSGL_RequestTracker::MarkAsFinished(), CFeatureTableReader::MoveRegionsToProteins(), fix_pub::MUIsJournalIndexed(), NCBITEST_AUTO_INIT(), CAgpRow::New(), CSeq_id_PDB_Info::Normalize(), CPrefetchRequest::OnStatusChange(), CApplyMods::operator()(), IMacroFunction< CIRef< IMacroBioDataIter > >::operator()(), IEditMacroFunction::operator()(), CReportNode::operator[](), CFeature_table_reader::ParseTrnaExtString(), CSeqVectorCache::PrefetchSequence(), CAsnvalThreadState::ProcessBioseq(), CAsnvalThreadState::ProcessBioseqset(), CTbl2AsnApp::ProcessOneEntry(), CID2Processor::ProcessReply(), CID2SNPProcessor_Impl::ProcessReply(), CTbl2AsnApp::ProcessSingleEntry(), CNewCleanup_imp::ProtSeqBC(), CHugeFileProcess::Read(), read_seq_id(), CID2Client::ReadReply(), CWGSMasterDescrSetter::RegisterCallbacks(), CHugeFileValidator::RegisterReaderHooks(), CLDS2_DataLoader::RegisterUrlHandler(), CLDS2_Manager::RegisterUrlHandler(), CDataSource::RemoveAnnot(), CTSE_ScopeInfo::RemoveAnnot(), CDataSource::RemoveEntry(), CTSE_ScopeInfo::RemoveEntry(), CSeq_annot_Info::Replace(), CDataSource::ReplaceAnnot(), CThreadPool_Impl::RequestExclusiveExecution(), CLocalFileRestorer::RestoreFile(), CAlnTestApp::Run(), s_AddBiomol(), CUnculturedTool::s_AddEnvironmentalSample(), s_AddPrimers(), s_AdjustToAnnotatedCDS(), CMacroFunction_Autodef::s_AutodefSeqEntryNoTitle(), CMacroFunction_Autodef::s_AutodefSequenceNoTitle(), s_BuildDeltaSeq(), s_BuildRawBioseq(), s_CreateDescriptor(), s_CreateSeqloc(), s_GetCDSLoc(), s_GetCodeBreakSeqLocMix(), s_GetDeflineIdString(), fix_pub::s_GetESearchIds(), s_GetIdString(), s_GetMappedFeat(), s_GetTrimmedLength(), s_HasUnprocessedCdregions(), s_InitializeStructuredCommentRules(), s_MakeCDSFeat(), s_NormalizeNulls(), fix_pub::s_ProcessConsortia(), s_RemoveTaxnameFromProtRef(), s_SetBioSourceField(), s_SetDBLinkDesc(), s_SetDBLinkFieldVals(), s_SetPrimerNames(), s_SetPrimerSeqs(), s_SetSequenceInfo(), s_SetUpXrefPairs(), s_StringToCodeBreak(), s_WriteBioseqSet(), s_WriteSeqSubmit(), NSNPWebServices::SearchByVarId(), CSeq_entry_EditHandle::SelectSeq(), CScope_Impl::SelectSeq(), CSeq_entry_EditHandle::SelectSet(), CScope_Impl::SelectSet(), SeqLocMapperToPairwiseAligns(), CDescrCache::SetBioSource(), CMatchmRNA::SetCDS(), CDescrCache::SetComment(), CDescrCache::SetDBLink(), CAutoSqlStandardFields::SetDisplayData(), CVariation_ref::SetDuplication(), CDescrCache::SetFileTrack(), CDescrCache::SetGBblock(), CDescrCache::SetGenomeProjects(), CVariation_ref::SetIdentity(), CGraphTrack::SetLayout(), SetLocalCopyHook(), SetLocalReadHook(), SetLocalSkipHook(), SetLocalWriteHook(), CWGSDb_Impl::SetMasterDescr(), CVariation_ref::SetMissense(), CVariation_ref::SetMNP(), CDescrCache::SetMolInfo(), CPrefetchRequest::SetProgress(), CDescrCache::SetPubdesc(), CVariation_ref::SetSNV(), CDescrCache::SetTpaAssembly(), CUpdateMultipleSeq_Input::SetUpdateEntry(), CAutoSqlCustomFields::SetUserObject(), CIdMapperConfig::SourceHandle(), SplitLocationForGap(), sRunTest(), CPSGL_RequestTracker::StartProcessItemInBackground(), CPSGL_RequestTracker::StartProcessReplyInBackground(), sUpdateCase(), Test_SynonymFiles(), CMacroFunction_Autodef::TheFunction(), CMacroFunction_AutodefComplete::TheFunction(), CMacroFunction_ApplyCDSFrame::TheFunction(), CMacroFunction_ReplaceStopWithSelenocysteine::TheFunction(), CMacroFunction_ApplyCDS::TheFunction(), CMacroFunction_ApplyRNA::TheFunction(), CMacroFunction_ApplyGene::TheFunction(), CMacroFunction_ApplyOtherFeature::TheFunction(), CMacroFunction_LookupPub::TheFunction(), CMacroFunction_DOILookupBase::TheFunction(), CBamUtils::UpdateCoverageGraphInfo(), UpdateSeqLength(), CValidator::Validate(), CAsnvalThreadState::ValidateAsync(), CAlnWriter::WriteAlignSplicedSeg(), CID2Client::WriteRequest(), CSeq_loc_Conversion_Set::x_Add(), CFastaOstreamEx::x_AddGeneAttributes(), CFeatureTrack::x_AddHistogram(), CCachedTaxon3::x_AddReplyToCache(), CScopeTransaction_Impl::x_AddScope(), CAlnReader::x_AddTitle(), CInfoCache_Base::x_AddToGCQueue(), CScope_Impl::x_AddTSESetWithAnnots(), CTrackConfigManager::x_AppendKeyDisplayOptions(), x_ApplyCmd(), CFastaReader::x_ApplyMods(), CLocalFileRestorer::x_AttachNewObject(), CAutogeneratedCleanup::x_BasicCleanupBioseq_inst(), CAutogeneratedCleanup::x_BasicCleanupBioseqDescr(), CMacroFunction_StringConstraints::x_BuildCaseStringConstraint(), CMacroFunction_StringConstraints::x_BuildNoCaseStringConstraint(), CMacroFunction_EditFeatLocation::x_CheckInitFeature(), CCleanupHugeAsnReader::x_CleanupTopLevelDescriptors(), CGraphTrack::x_CollectAllGraphs(), CGff2Reader::x_CreateAlignment(), CTSE_ScopeInfo::x_CreateBioseqInfo(), CSGAlignmentJob::x_CreateCAlignGlyph(), CHgvsNaIrepReader::x_CreateDeletionVarref(), CHgvsProtIrepReader::x_CreateDelinsSubvarref(), CHgvsProtIrepReader::x_CreateDelinsVarref(), CHgvsNaIrepReader::x_CreateDelinsVarref(), CDesktopDataBuilder::x_CreateDesktopItems(), CHgvsNaIrepReader::x_CreateDuplicationVarref(), CSGAlignmentJob::x_CreateFeatGlyph(), CHgvsProtIrepReader::x_CreateFrameshiftVarref(), CSGAnnotJob::x_CreateHistFromGraph(), CHgvsProtIrepReader::x_CreateIdentitySubvarref(), CHgvsProtIrepReader::x_CreateInsertedRawseqSubvarref(), CHgvsProtIrepReader::x_CreateInsertionSubvarref(), CHgvsProtIrepReader::x_CreateInsertionVarref(), CNaSeqlocHelper::x_CreateIntFuzz(), CHgvsNaIrepReader::x_CreateInversionVarref(), CHgvsNaIrepReader::x_CreateNaIdentityVarref(), CHgvsNaIrepReader::x_CreateNtSeqLiteral(), CHgvsProtIrepReader::x_CreateProteinDelVarref(), CHgvsProtIrepReader::x_CreateProteinDupVarref(), CHgvsProtIrepReader::x_CreateProteinSubstVarref(), CFeatModApply::x_CreateSeqfeat(), CNaSeqlocHelper::x_CreateSeqloc(), CDesktopDataBuilder::x_CreateSeqSubmit(), CHgvsNaIrepReader::x_CreateSimpleVariantFeat(), CHgvsProtIrepReader::x_CreateSimpleVariantFeat(), CHgvsNaIrepReader::x_CreateSSRVarref(), CHgvsProtIrepReader::x_CreateSSRVarref(), CHgvsNaIrepReader::x_CreateSubstVarref(), CHgvsProtIrepReader::x_CreateVarrefFromLoc(), CMacroFunction_SwapRelFeatQual::x_DoDestFeatFieldsExist(), CLegendItemGlyph::x_Draw(), CFeatGlyph::x_DrawProjectedRuler(), CFeatGlyph::x_DrawRuler(), CSGSeqGraphJob::x_Execute(), CWigGraph::x_FetchData(), CMacroFunction_ISOJTALookup::x_FindIsoJtaTitle(), CGff2Reader::x_GetAlignmentScores(), CAnnotGetter::x_GetCompleteSeqAnnot(), CScope_Impl::x_GetDSInfo(), CGapAnalysis::x_GetOrCreateHistogramBinner(), CAlnReader::x_GetSeqInst(), CHugeAsnReader::x_GetTopLevelDescriptors(), CMQueryFunctionOps::x_GetUserObject(), CFeatModApply::x_GetWholeSeqLoc(), CCdregionValidator::x_HasGoodParent(), CTMS_DisplayTrack_Client::x_HttpFetch(), CDataSource::x_IndexAnnotTSEs(), CTSE_ScopeInfo::x_IndexBioseq(), CDataSource::x_IndexSplitInfo(), CDataSource_ScopeInfo::x_IndexTSE(), CDataSource::x_IndexTSE(), CSeq_align_Mapper_Base::x_Init(), CId2FetchApp::x_InitConnection(), CId2Reader::x_InitConnection(), CPubseq2Reader::x_InitConnection(), CTSE_Chunk_Info::x_LoadBioseq(), CTSE_Split_Info::x_LoadChunks(), CGraphTrack::x_LoadSettings(), CScope_Impl::x_MakeDummyTSE(), CGff2Reader::x_MergeAlignments(), CNewCleanup_imp::x_MoveNpDBlinks(), CGraphTrack::x_OnJobCompleted(), CSeq_loc_Mapper_Base::x_OptimizeSeq_loc(), CAlnReader::x_ParseAndValidateSeqIds(), CHugeFileDemoApp::x_PopulateScope(), CGff2Reader::x_ProcessAlignmentScores(), CGff2Reader::x_ProcessAlignmentsGff(), CCleanupApp::x_ProcessHugeFile(), CCleanupApp::x_ProcessHugeFileBlob(), CFastaDeflineReader::x_ProcessIDs(), CID2SNPProcessor_Impl::x_ProcessReplyGetBlobId(), CID2SNPProcessor_Impl::x_ProcessReplyGetSeqId(), CId2FetchApp::x_ProcessRequest(), CId2ReaderBase::x_ProcessRequest(), CCleanupApp::x_ProcessTraditionally(), x_PushRange(), CUpdateSeq_Input::x_ReadUpdateSeq_ASN(), CUpdateMultipleSeq_Input::x_ReadUpdateSeqs_ASN(), CDataSource::x_ResetDirtyAnnotIndex(), CTSE_ScopeInfo::x_RestoreAdded(), CMacroFunction_EditFeatLocation::x_RetranslateCDS(), CSeq_entry_Info::x_Select(), CBioseq_Base_Info::x_SetAnnot(), CHugeAsnReader::x_SetBioseqSetHooks(), CDescrModApply::x_SetDBLinkFieldVals(), CDescrModApply::x_SetDBxref(), CDataSource::x_SetDirtyAnnotIndex(), CHugeAsnReader::x_SetFeatIdHooks(), CMacroFunction_SwapQual::x_SetField(), CDescrModApply::x_SetFileTrack(), CGapsEditor::x_SetGapParameters(), CDescrModApply::x_SetGenomeProjects(), CModAdder::x_SetHist(), CHugeAsnReader::x_SetHooks(), CBioseq_set_Info::x_SetObject(), CDescrModApply::x_SetOrgMod(), CDescrModApply::x_SetPMID(), CFeatModApply::x_SetProtein(), CVectorTrimPanel::x_SetSeqData(), CCleanupHugeAsnReader::x_SetSeqFeatHooks(), CDescrModApply::x_SetSubtype(), CDescrModApply::x_SetTpaAssembly(), ITreeMacroFunction::x_SetUserObjects(), IEditMacroFunction::x_SetUserObjects(), CVariationNormalization_base< T >::x_Shift(), CSequenceAmbigTrimmer::x_SliceBioseq(), CFastaOstreamEx::x_TrimLocation(), CFeatTrim::x_TrimLocation(), CDescrModApply::x_TryPCRPrimerMod(), CIdResolver::x_TryProcessGenomicLRG(), CDataSource::x_UnindexSplitInfo(), CDataSource::x_UnindexTSE(), CAlnSpanVertModel::x_UpdateLocs(), SSNP_Info::x_UpdateSeq_featData(), CValidError_bioseq::x_ValidateCDSmRNAmatch(), CGff3Writer::x_WriteSeqAnnotHandle(), CVcfReader::xAssignVariationIds(), CGtfReader::xCreateCds(), CGtfReader::xCreateGene(), CGtfReader::xCreateRna(), seqsubmit_split::CSeqSubSplitter::xFlattenSeqEntry(), xgbint_ver(), xgbloc_ver(), CGenbank2Asn::xGetEntry(), CGff3Reader::xProcessAlignmentData(), CMultiReader::xReadASN1Binary(), CMultiReader::xReadFlatfile(), CFeatureTableReader::xTranslateProtein(), CAnnotWriterApp::xTryProcessInputId(), CNewCleanup_imp::xUpdateSeqfeatCitPub(), CGff2Reader::xUpdateSplicedSegment(), CGvfReader::xVariationMakeEversions(), CGvfReader::xVariationMakeInversions(), CGvfReader::xVariationMakeTranslocations(), and seqsubmit_split::CSeqSubSplitter::xWrapSeqEntries().
◆ Referenced() bool CObject::Referenced ( void ) const inlineCheck if object is referenced.
Definition at line 468 of file ncbiobj.hpp.
Referenced by CUsedTlsBases::ClearAll(), CRWLockHolder_Pool::DeleteHolder(), SDiscoveredServers::DeleteThis(), SNetServerInPool::DeleteThis(), CNCBlobVerManager::ExecuteSlice(), CVDBObjectCacheBase::Get(), CWeakObject::GetPtrProxy(), CVDBObjectCacheBase::Put(), CObjectManager::ReleaseDataSource(), CNCBlobVerManager::RequestMemRelease(), CDataSource::x_LockTSE(), and CNCBlobVerManager::x_ReleaseMgr().
◆ ReferencedOnlyOnce() bool CObject::ReferencedOnlyOnce ( void ) const inlineCheck if object is referenced only once.
Definition at line 475 of file ncbiobj.hpp.
Referenced by CGenBankUIDataSource::Close(), CCreatedFeat_Ref::GetMappedFeature(), CCreatedFeat_Ref::GetMappedLocation(), CSeq_id_Textseq_Info::GetPackedSeqId(), CSeq_id_General_Id_Info::GetPackedSeqId(), CSeq_id_General_Str_Info::GetPackedSeqId(), CSeq_id_Gi_Info::GetPackedSeqId(), CNCBlobVerManager::ObtainReference(), CAlign_CI::operator*(), CObjectManager::ReleaseDataSource(), CUIToolRegistry::Reset(), CCommandProcessor::run(), CAnnotMapping_Info::UpdateMappedSeq_loc(), SSNP_Info::UpdateSeq_feat(), CInfoManager::x_AssignLoadMutex(), CQuery::CField::x_Detach(), CInfoManager::x_ReleaseLoadMutex(), CSeqDBVol::x_UnleaseGiFile(), CSeqDBVol::x_UnleasePigFile(), CSeqDBVol::x_UnleaseStrFile(), CSeqDBVol::x_UnleaseTiFile(), SSNP_Info::x_UpdateSeq_featData(), and CObjectManager::~CObjectManager().
◆ Release() [1/2]template<class C , class Locker >
Release a reference to the object and return a pointer to the object.
Releasing a reference means decreasing the reference count by "1". A pointer to the existing object is returned, unless this pointer is already null(0), in which the null pointer exception (eNullPtr) is thrown.
Similar to ReleaseOrNull(), except that this method throws an exception whereas ReleaseOrNull() does not.
Definition at line 846 of file ncbiobj.hpp.
Referenced by CDockLayoutTree::CNode::CloneNode(), CDockLayoutTree::CloneTree(), CGenBankUIDataSource::Close(), SNetServiceImpl::Create(), CGlResMgr::Create1DRGBATexture(), CPluginValueConstraint::CreateAnnotType(), Messenger::CreateBiostrucAnnotSetForHighlightsOnSingleObject(), CPluginValueConstraint::CreateFeatProduct(), CPluginValueConstraint::CreateFeatSubtype(), CPluginValueConstraint::CreateFeatType(), CPluginValueConstraint::CreateLower(), CreateMimeFromBiostruc(), CGuiObjectInfoSeq_id::CreateObject(), CSelectProjectOptions::CreateProject(), CPluginValueConstraint::CreateProjectItemType(), CPluginValueConstraint::CreateRange(), CPluginValueConstraint::CreateSeqLenLower(), CPluginValueConstraint::CreateSeqLenRange(), CPluginValueConstraint::CreateSeqLenUpper(), CPluginValueConstraint::CreateSeqMol(), CPluginValueConstraint::CreateSeqRepr(), CPluginValueConstraint::CreateSeqSameMol(), CPluginValueConstraint::CreateSet(), CPluginValueConstraint::CreateUpper(), AlignmentUtility::DoIBM(), CIndexedDb_Old::DoPreSearch(), CAsnConverter< TCpp, TC >::FromC(), CGlTexture::GenerateImage(), CSeq_id_Mapper::GetInstance(), CSeq_loc_CI::GetRangeAsSeq_loc(), GetStructureFromCacheFolder(), GetStructureViaHTTPAndAddToCache(), CImage::GetSubImage(), CBLASTToolManager::GetTask(), CCleanupTool::GetTask(), CMergeTool::GetTask(), CAutodefToolManager::GetTask(), CSrcEditTool::GetTask(), LaunchAdapterJob(), CDBConnectionFactory::CMapperFactory::Make(), CMacroEditingActionPanel::OnActionTreeItemChanged(), CScopeAlnSeqIdConverter< TAlnSeqId >::operator()(), CArgDescMandatory::ProcessArgument(), CKalignTool::QuickLaunch(), CMafftTool::QuickLaunch(), CMuscleTool::QuickLaunch(), CSplignTool::QuickLaunch(), CImageIORaw::ReadImage(), CObjectIStream::ReadObject(), CObjectIStream::ReadPointer(), CObjectIStreamAsnBinary::ReadPointer(), CColumnarVCFReader::ReadVariantsForChrs(), CRegistryReadView::ResolveField(), s_CreateObjList(), s_FillMaskLocFromBlastResults(), CDockManager::SaveLayout(), CImageUtil::Scale(), CSeqUtils::SeqLocToBioseq(), CDB_UserHandler_Wrapper::Set(), sWindowPosToUserObject(), CBLASTParams::ToUserObject(), CNetBlastJobDescriptor::ToUserObject(), CRelation::UserObjectFromRelation(), CEntrez2ClientApp::x_EvalBoolean(), CAutoInitRef< T >::x_Init(), CSGSeqGraphJob::x_LoadSeqTable(), CPromote::x_MakeMolinfoDesc(), CBLASTParams::x_ToUserObject(), and SDeferredExecutor::~SDeferredExecutor().
◆ Release() [2/2]template<class C , class Locker >
Release a reference to the object and return a pointer to the object.
Releasing a reference means decreasing the reference count by "1". A pointer to the existing object is returned, unless this pointer is already null(0), in which the null pointer exception (eNullPtr) is thrown.
Similar to ReleaseOrNull(), except that this method throws an exception whereas ReleaseOrNull() does not.
Definition at line 1512 of file ncbiobj.hpp.
Referenced by CRelation::RelationFromUserObject().
◆ ReleaseOrNull() [1/2]template<class C , class Locker >
Release a reference to the object and return a pointer to the object.
Releasing a reference means decreasing the reference count by "1". A pointer to the existing object is returned, unless this pointer is already null(0), in which case a null(0) is returned.
Similar to Release(), except that this method returns a null, whereas Release() throws a null pointer exception.
Definition at line 816 of file ncbiobj.hpp.
Referenced by CIRef< IAlignRow >::CIRef(), CPhyloPdfGrabber::GrabImages(), CPdfGrabber::GrabImages(), CVDBObjectCache< CSNPDb_Impl::SExtraTableCursor >::Put(), CDockContainer::SaveLayout(), CGlResMgr::SetCurrentRenderer(), CDockContainerDescr::ToUserObject(), and CPromote::x_GetProductId().
◆ ReleaseOrNull() [2/2]template<class C , class Locker >
◆ ReleaseReference() void CObject::ReleaseReference ( void ) const ◆ Relock() [1/2] void CObjectCounterLocker::Relock ( const CObject * object ) const ◆ Relock() [2/2]template<class Interface >
Definition at line 568 of file ncbiobj.hpp.
◆ RemoveLastReference() void CObject::RemoveLastReference ( TCount count ) const privateRemove the last reference.
Definition at line 824 of file ncbiobj.cpp.
References count, CObject::DeleteThis(), CObject::eCounterStep, eMagicCounterDeleted, eMagicCounterPoolDeleted, ERR_POST_X, CObject::m_Counter, CObject::ObjectStateCanBeDeleted(), CObject::ObjectStateUnreferenced(), CObject::ObjectStateValid(), and ObjFatal.
Referenced by CObject::RemoveReference().
◆ RemoveReference() void CObject::RemoveReference ( void ) const inlineRemove reference to object.
Definition at line 500 of file ncbiobj.hpp.
References CObject::eCounterStep, CObject::m_Counter, CObject::ObjectStateReferenced(), and CObject::RemoveLastReference().
Referenced by CUsedTlsBases::ClearAll(), CObjectMemoryPoolChunk::DecrementObjectCount(), CUsedTlsBases::Deregister(), CAsyncDiagHandler::InstallToDiag(), CFileHandleDiagHandler::Post(), CNCBlobVerManager::Release(), CSrvTask::ReleaseDiagCtx(), CAsyncDiagHandler::RemoveFromDiag(), CFileHandleDiagHandler::Reopen(), CSafeStatic_Allocator< T >::s_RemoveReference(), s_ScanInfoCleanup(), s_ShiftStats(), s_TlsCleanup(), CSeqDBVol::x_UnleaseGiFile(), CSeqDBVol::x_UnleasePigFile(), CSeqDBVol::x_UnleaseStrFile(), CSeqDBVol::x_UnleaseTiFile(), CDB_Stream::~CDB_Stream(), and CFileHandleDiagHandler::~CFileHandleDiagHandler().
◆ ReportIncompatibleType() [1/2] void CObjectCounterLocker::ReportIncompatibleType ( const type_info & type ) static ◆ ReportIncompatibleType() [2/2] void CPtrToObjectProxy::ReportIncompatibleType ( const type_info & type ) static ◆ ReportLockedObjects() void CObjectCounterLocker::ReportLockedObjects ( bool clear =false
) static ◆ Reset() [1/7]
template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Reset the containing pointer to null.
Definition at line 2728 of file ncbiobj.hpp.
◆ Reset() [2/7]template<class C , class Locker >
Reset reference object to new pointer.
This sets the pointer to object to the new pointer, and removes reference count to old object and deletes the old object if this is the last reference to the old object.
Definition at line 790 of file ncbiobj.hpp.
◆ Reset() [3/7]template<class C , class Locker >
Reset reference object to new pointer.
This sets the pointer to object to the new pointer, and removes reference count to old object and deletes the old object if this is the last reference to the old object.
Definition at line 1456 of file ncbiobj.hpp.
◆ Reset() [4/7]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Reset the containing pointer to another object.
Definition at line 2734 of file ncbiobj.hpp.
◆ Reset() [5/7]template<class C , class Locker >
void CRef< C, Locker >::Reset ( void ) inlineReset reference object.
This sets the pointer to object to null, and removes reference count to object and deletes the object if this is the last reference to the object.
Definition at line 773 of file ncbiobj.hpp.
Referenced by NDirectNetStorageImpl::CROFileTrack::Abort(), NDirectNetStorageImpl::CWOFileTrack::Abort(), CChangeUnindexedObjectCommand< T >::Add(), CCompoundRegistry::Add(), CBlast4_parameters::Add(), CSeq_loc_Conversion_Set::Add(), CAlnTableDS::Add(), CAddStructuredCommentKeyword::add_to_existing_genbank(), CWriteDB_Column::AddByteOrder(), CDockContainer::AddClientToDefaultLocation(), CThreeFeatRecord::AddFeature(), CWriteDB_GiMask::AddGiMask(), CIndexedDb_New::AddIndexInfo(), AddInsertWithGaps(), AddIntervalToDD(), AddPIDToSeqId(), CSeqGraphicPane::AddPointMarker(), CGBProjectHelper::AddProjectItemsFromRID(), CProjectService::AddProjectView(), CSeqGraphicPane::AddRangeMarker(), CTableAnnotDataSource::AddSeqLoc(), CPdf::AddShadedTris(), CTableAnnotDataSource::AddSnpSeqLoc(), CAppTaskService::AddTask(), CTreeGraphicsModel::AddTempCollapsedNode(), CScoreBuilder::AddTracebacks(), CTrackContainer::AddTracks(), CCDSTranslationPanel::AdjustForStopCodonHyperlinkClicked(), CTaxValidationAndCleanup::AdjustOrgRefsWithTaxLookupReply(), CSplitCDSwithTooManyXs::AdjustSingleCDS(), AdjustSingleFeature(), AgpRead(), CTrackConfigManager::AlignTrackConfig(), CObjectMemoryPool::Allocate(), CFuseJoinsInLocs::apply(), CClearNomenclature::apply(), CRecomputeIntervals::apply(), CAdjustFeatsForIntrons::apply(), CGroupExplode::apply(), CExplodeRNAFeats::apply(), CMergeBiosources::apply(), CLoadSecondaryAccessions::apply(), CEditSelectedGaps::apply_impl(), CCombineAdjacentGaps::apply_impl(), COrgAdvancedPanel::ApplyBioSource(), COrgGeneralPanel::ApplyBioSource(), CPubAuthorPanel::ApplyCitSub(), CPubStatusPanel::ApplyCitSub(), CSubmitterNamePanel::ApplyContactInfo(), CGeneralPanel::ApplyDescriptor(), CPubStatusPanel::ApplyPub(), CSubmissionWizard::ApplySubmitBlock(), CAuthorNamesPanel::ApplySubmitBlock(), CGeneralPanel::ApplySubmitBlock(), CReferencePanel::ApplySubmitBlock(), CSubmitterAffilPanel::ApplySubmitBlock(), CConvertCdsToMiscFeat::ApplyToAllAndDie(), CClearKeywords::ApplyToCSeq_entry(), CConvertComment::ApplyToCSeq_entry(), CRemoveStructuredCommentKeyword::ApplyToCSeq_entry_genbank(), CMolInfoEditDlg::ApplyToInst(), CGAssemblyOtherPanel::ApplyUser(), CGAssemblyPanel::ApplyUser(), ArgToSeq_id(), CNWFormatter::AsDenseSeg(), CReadUtil::AsSeqId(), CDB_String::Assign(), CTSE_Info::Assign(), CSeq_feat_Descr::Assign(), CRef< CAlnMixSegment >::AtomicReleaseTo(), CQueryParseNode::AttachUserObject(), CDiscrepancyContext::AuthorsObjRef(), CDiscrepancyVisitorImpl< _Name >::Autofix(), CDiscrepancyContext::AutofixSubmit_block(), CAutogeneratedCleanup::BasicCleanupSeqFeat(), CPdf::BeginAnnot(), CPdf::BeginContent(), CPdf::BeginDocument(), CPdf::BeginReference(), CNewCleanup_imp::BiosourceFeatBC(), BioSourceFromImpFeat(), CDiscrepancyContext::BiosourceObjRef(), BlastBuildArchive(), BlastSetupPreliminarySearchEx(), BldProtRefSeqEntry(), BookURLToBookRef(), BOOST_AUTO_TEST_CASE(), BrBookURLToCCddBookRef(), BrURLToBookRef(), CBuildAlnVecJob::Build(), BuildAlignDataSource(), BuildAln(), CMacroBioData_FeatIterBase::BuildEditedObject(), CMacroBioData_FeatIntervalIter::BuildEditedObject(), CMacroBioData_BioSourceIter::BuildEditedObject(), CMacroBioData_PubdescIter::BuildEditedObject(), CMacroBioData_PubdescIter::CSubmitblockIter::BuildEditedObject(), CMacroBioData_SeqdescIter::BuildEditedObject(), CMacroBioData_MolInfoIter::BuildEditedObject(), CMacroBioData_SeqAlignIter::BuildEditedObject(), CMacroBioData_SeqIter::BuildEditedObject(), CMacroBioData_SeqSetIter::BuildEditedObject(), CMacroBioData_TSEntryIter::BuildEditedObject(), CSeqAnnotFromFasta::BuildMasterSlaveSeqAlign(), CAgpRenumber::CAgpRenumber(), CScoreCache::CalculateScores(), CAlignGlyph::CAlignGlyph(), CAlnMultiModel::CAlnMultiModel(), CAlnSpanVertModel::CAlnSpanVertModel(), CAlnTableWidget::CAlnTableWidget(), CAlnWriter::CAlnWriter(), CGBDocument::CancelLoading(), CANIComment::CANIComment(), CAnnotCompareWidget::CAnnotCompareWidget(), CAnnotMetaDataJob::CAnnotMetaDataJob(), CArgDescriptions::CArgDescriptions(), CAuthorNamesPanel::CAuthorNamesPanel(), CAutoAddDesc::CAutoAddDesc(), CAutoInitDesc< _T >::CAutoInitDesc(), CBAMDataLoader::CBAMDataLoader(), CBasicFastaWrapper::CBasicFastaWrapper(), CBl2Seq::CBl2Seq(), CBlastAppArgs::CBlastAppArgs(), CBlastDbDataLoader::CBlastDbDataLoader(), CBlastFastaInputSource::CBlastFastaInputSource(), CBlastFormat::CBlastFormat(), CBlastnAppArgs::CBlastnAppArgs(), CBlastnNode::CBlastnNode(), CBlastNode::CBlastNode(), CBlastnVdbAppArgs::CBlastnVdbAppArgs(), CBlastOptionsRemote::CBlastOptionsRemote(), CBlastpAppArgs::CBlastpAppArgs(), CBlastpNode::CBlastpNode(), CBlastScopeSource::CBlastScopeSource(), CBlastScopeSourceWrapper::CBlastScopeSourceWrapper(), CBlastxAppArgs::CBlastxAppArgs(), CBlastxNode::CBlastxNode(), CBuildDatabase::CBuildDatabase(), CBulkInsert::CBulkInsert(), CCDDBlobId::CCDDBlobId(), CChangePhyloExpandCollapseCmd::CChangePhyloExpandCollapseCmd(), CChangePhyloPropertyCmd::CChangePhyloPropertyCmd(), CChangePhyloSelectionSetCmd::CChangePhyloSelectionSetCmd(), CCitSubPanel::CCitSubPanel(), CCmdAddCDS::CCmdAddCDS(), CCmdChangeAlign::CCmdChangeAlign(), CCmdChangeBioseqInst::CCmdChangeBioseqInst(), CCmdChangeBioseqSet::CCmdChangeBioseqSet(), CCmdChangeGraph::CCmdChangeGraph(), CCmdCreateCDS::CCmdCreateCDS(), CCompareSeqRegions::CCompareSeqRegions(), variation::CHgvsParser::CContext::CContext(), CCSRADataLoader::CCSRADataLoader(), CDB_String::CDB_String(), CDbapiConnMgr::CDbapiConnMgr(), CDBLink::CDBLink(), CDeltaBlastAppArgs::CDeltaBlastAppArgs(), CDeltaBlastTestFixture::CDeltaBlastTestFixture(), CDensegGraphicDataSource::CDensegGraphicDataSource(), CNewCleanup_imp::CdRegionEC(), CEditingActionSummaryConstraint::CEditingActionSummaryConstraint(), CExperimentListPanel::CExperimentListPanel(), CExperimentsPanel::CExperimentsPanel(), CFastaBioseqSource::CFastaBioseqSource(), CFeatTableEdit::CFeatTableEdit(), CFeaturePropagator::CFeaturePropagator(), CQuery::CField::CField(), CFlatFileConfig::CFlatFileConfig(), CFlatFileSequenceListJob::CFlatFileSequenceListJob(), CGBQualPanel::CGBQualPanel(), CGC_Assembly_Parser::CGC_Assembly_Parser(), CGencollIdMapper::CGencollIdMapper(), CGenomeAssemblyComment::CGenomeAssemblyComment(), CGetAssembliesJob::CGetAssembliesJob(), CGff2Writer::CGff2Writer(), CGlRenderNode::CGlRenderNode(), CGlResMgr::CGlResMgr(), CGlTexture::CGlTexture(), CGlyphContainer::CGlyphContainer(), CGuiHttpSessionRequest::CGuiHttpSessionRequest(), CAssemblyTrackingPanel::ChangeSeqdesc(), CDBLinkPanel::ChangeSeqdesc(), CSequencingTechnologyPanel::ChangeSeqdesc(), CSrcDescEditorPanel::ChangeSeqdesc(), CDescriptorTextPanel::ChangeSeqdesc(), CMolInfoPanel::ChangeSeqdesc(), CStructuredCommentPanel::ChangeSeqdesc(), CheckAccession(), CheckStrainReply(), CHitMatrixRenderer::CHitMatrixRenderer(), CIgBlastnAppArgs::CIgBlastnAppArgs(), CIgBlastpAppArgs::CIgBlastpAppArgs(), CAnnotationASN1::CImplementationData::CImplementationData(), CImportFeaturePanel::CImportFeaturePanel(), CImportStrategyData::CImportStrategyData(), CInferenceListPanel::CInferenceListPanel(), CJournalPanel::CJournalPanel(), CKBlastpAppArgs::CKBlastpAppArgs(), CkCdRegion(), CPubEquivCleaner::Clean(), CFileAutoLoader::CleanUI(), CWeakObject::CleanWeakRefs(), CGlTexture::Clear(), CFlexibleDatePanel::Clear(), CBlastDbBlob::Clear(), CObjectIndex::Clear(), CGBProjectHandle::Clear(), CSplign::ClearMem(), CGlResMgr::ClearRenderers(), CAlnMultiModel::ClearRows(), CMacroStringConstraintPanel::ClearValues(), CSuspectAddConstraint::ClearValues(), CleaveOffByTail(), CLinkedFeatsGroup::CLinkedFeatsGroup(), CLocalePanel::CLocalePanel(), CBlastOptions::Clone(), CDiscrepancyObject::Clone(), CDockLayoutTree::CNode::CloneNode(), CBGZFStream::Close(), CWriteDB_Impl::Close(), NDirectNetStorageImpl::CROFileTrack::Close(), NDirectNetStorageImpl::CWOFileTrack::Close(), CIStreamBuffer::Close(), CMacroLabel::CMacroLabel(), CMagicBlastAppArgs::CMagicBlastAppArgs(), CMagicBlastTestFixture::CMagicBlastTestFixture(), CMaskWriterBlastDbMaskInfo::CMaskWriterBlastDbMaskInfo(), CMatePairGlyph::CMatePairGlyph(), CMergeTree::CMergeTree(), CMiscSeqTableColumn::CMiscSeqTableColumn(), CMultiAlignerFixture::CMultiAlignerFixture(), CNcbiApplicationAPI::CNcbiApplicationAPI(), CNewCleanup_imp::CNewCleanup_imp(), CNSTDatabase::CNSTDatabase(), CObjectLoadingTask::CObjectLoadingTask(), CObjMgr_LocalQueryData::CObjMgr_LocalQueryData(), CObjMgrFree_LocalQueryData::CObjMgrFree_LocalQueryData(), CollectSubNames(), CFixForTransSplicing::CombineFeatures(), COnlinePublicationPanel::COnlinePublicationPanel(), CDatabaseImpl::Connect(), CDatabase::Connect(), CFeaturePropagator::ConstructProteinFeatureForPropagatedCodingRegion(), CNetBLAST_DMSearchForm::ConstructQuery(), COrfSearchForm::ConstructQuery(), CSeq_loc_Conversion_Set::Convert(), CSeq_loc_Conversion::Convert(), CSeq_align_Mapper::Convert(), CSeq_align_Mapper_Base::Convert(), CSeq_loc_Conversion::ConvertBond(), CSeq_loc_Conversion::ConvertCdregion(), CSeq_loc_Conversion_Set::ConvertCdregion(), CSeq_loc_Conversion::ConvertEquiv(), CSeq_loc_Conversion_Set::ConvertEquiv(), CSeq_loc_Conversion_Set::ConvertInterval(), CFeatureGenerator::ConvertLocToAnnot(), CSeq_loc_Conversion_Set::ConvertMix(), CFeatureGenerator::SImplementation::ConvertMixedAlignToAnnot(), CAuthor::ConvertMlToStandard(), CFeatureTableReader::ConvertNucSetToSet(), CSeq_loc_Conversion::ConvertPacked_int(), CSeq_loc_Conversion::ConvertPacked_pnt(), CSeq_loc_Conversion_Set::ConvertPacked_pnt(), CSeq_loc_Conversion::ConvertRna(), CSeq_loc_Conversion_Set::ConvertRna(), TMaskedQueryRegions::ConvertToCPacked_seqint(), CRemoteBlast::ConvertToRemoteMasks(), CTableImportDataSource::ConvertToSeqAnnot(), CCdCore::CopyBioseqForSeqId(), CBlobSplitterImpl::CopyHist(), CCopyHook_Bioseq_set::CopyObject(), CCopyHook_Bioseq::CopyObject(), CCopyHook_Seq_descr::CopyObject(), CCopyHook_Seq_annot::CopyObject(), CCopyHook_Submit_block::CopyObject(), CBlobSplitterImpl::CopySequence(), CPatentPanel::CPatentPanel(), CPhyloTreeJob::CPhyloTreeJob(), CPhyloTreeMaxDirectChildDist::CPhyloTreeMaxDirectChildDist(), CPrelimSearchThread::CPrelimSearchThread(), CProceedingsChapterPanel::CProceedingsChapterPanel(), CPSGDataLoader::CPSGDataLoader(), CPsiBl2SeqTestFixture::CPsiBl2SeqTestFixture(), CPsiBlastAppArgs::CPsiBlastAppArgs(), CPsiBlastInputData::CPsiBlastInputData(), CPsiBlastTestFixture::CPsiBlastTestFixture(), CPslWriter::CPslWriter(), CPublisherPanel::CPublisherPanel(), CQuery::CQuery(), CQueryFactoryInfo::CQueryFactoryInfo(), CQuerySet::CQuerySet(), CRawSeqDBSource::CRawSeqDBSource(), CRawWiggleRecord::CRawWiggleRecord(), CAnnotationASN1::CImplementationData::create_cdregion_feature(), CAlnMap::CreateAlignFromRange(), CreateAnchoredAlnFromAln(), CBlastBioseqMaker::CreateBioseqFromId(), CVDBBlastUtil::CreateBioseqFromOid(), CVDBBlastUtil::CreateBioseqFromVDBSeqId(), CBlastAligner::CreateBlastAligners(), CRemoteBlastAligner::CreateBlastAligners(), SCmdCreator< type >::CreateCmd(), CPhrap_Seq::CreateComplementedDescr(), CAlnVecMultiDataSource::CreateConsensus(), CConvertCdsToMiscFeat::CreateControls(), CEditPubDlg::CreateControls(), CAddSuspectProductRule::CreateControls(), CTextPanel::CreateControls(), CreateEditorForObject(), CTableAnnotDataSource::CreateFeature(), variation_ref::CVariationUtil::CreateFlankLocs(), variation::CVariationUtil::CreateFlankLocs(), CEntrezDB::CreateGene_Gene(), CEntrezDB::CreateGeneSet_Gene(), CLadderContainer::CreateLadderArrays(), CLBLASTObjectLoader::CreateLoader(), CLDS2_DataLoader::CLDS2_LoaderMaker::CreateLoader(), CGBDocument::CreateLoadJob(), CBlastDbSet::CreateLocalDbAdapter(), CSeqIdListSet::CreateLocalDbAdapter(), CSeqLocListSet::CreateLocalDbAdapter(), CFastaFileSet::CreateLocalDbAdapter(), BLASTer::CreateNewPairwiseAlignmentsByBlast(), CProjectService::CreateNewWorkspace(), CreatePackedsegFromAnchoredAln(), CreatePackedsegFromPairwiseAln(), CPhrap_Seq::CreatePadsFeat(), CAlignCleanup::CreatePairwiseFromMultiple(), CSpliced_exon::CreateRowSeq_interval(), CFeaturePropagator::CreateRowSeq_loc(), CreateSeqLocMapperFromFeat(), CTableAnnotDataSource::CreateSnpFeature(), CTableAnnotDataSource::CreateSnps(), CTable2AsnContext::CreateSubmitFromTemplate(), CVarTrackFactory::CreateTracks(), CFeatureTrackFactory::CreateTracks(), CVcfTrackFactory::CreateTracks(), CreateTruncatedSequence(), variation::CreateUnknownProtConsequenceVariation(), CTreeTriFanNode::CreateVbo(), CSimpleProjectView::CreateView(), CViewManagerService::CreateViewInstance(), CEditObjectSeq_desc::CreateWindow(), CEditObjectSubmit_block::CreateWindow(), CEditObjectSeq_feat::CreateWindowImpl(), CRemoteBlastDbDataLoader::CRemoteBlastDbDataLoader(), CRemoveSeqId::CRemoveSeqId(), CRenderCommon::CRenderCommon(), CRequestContext_PassThrough::CRequestContext_PassThrough(), CRequestContextGuard_Base::CRequestContextGuard_Base(), CRMBlastnAppArgs::CRMBlastnAppArgs(), CRPSBlastAppArgs::CRPSBlastAppArgs(), CRPSBlastNode::CRPSBlastNode(), CRPSTBlastnAppArgs::CRPSTBlastnAppArgs(), CRPSTBlastnNode::CRPSTBlastnNode(), CSchedulerEngine::CSchedulerEngine(), CScope::CScope(), CScoringJob::CScoringJob(), CBl2Seq::CSearchResultSet2TSeqAlignVector(), CSegmentGlyph::CSegmentGlyph(), CSeqDBAliasFile::CSeqDBAliasFile(), CSeqDBImpl::CSeqDBImpl(), CSeqDBLMDBEntry::CSeqDBLMDBEntry(), CSeqDbSeqInfoSrc::CSeqDbSeqInfoSrc(), CSeqDBVol::CSeqDBVol(), CSeqEntryIndex::CSeqEntryIndex(), CSeqGraphicJob::CSeqGraphicJob(), CSeqTextDataSourceInterval::CSeqTextDataSourceInterval(), CSeqTextDlg::CSeqTextDlg(), CSequenceTrack::CSequenceTrack(), CSGSequenceDS::CSGSequenceDS(), CShortReadFastaInputSource::CShortReadFastaInputSource(), CSimpleGraphicDataSource::CSimpleGraphicDataSource(), CSNPDataLoader::CSNPDataLoader(), CSnpTrack::CSnpTrack(), CSplignSimple::CSplignSimple(), CSplitQueryTestFixture::CSplitQueryTestFixture(), CSwitchPointGlyph::CSwitchPointGlyph(), CTableAnnotDataSource::CTableAnnotDataSource(), CTableColumnTypeGuesser::CTableColumnTypeGuesser(), CTableDataValidateJob::CTableDataValidateJob(), CTableDataVcfJob::CTableDataVcfJob(), CTableQueryExec::CTableQueryExec(), CTblastnAppArgs::CTblastnAppArgs(), CTblastnNode::CTblastnNode(), CTblastnVdbAppArgs::CTblastnVdbAppArgs(), CTblastxAppArgs::CTblastxAppArgs(), CTrackInitializationJob::CTrackInitializationJob(), CTSE_Info::CTSE_Info(), CUpdateSeqPanel::CUpdateSeqPanel(), CVDBThread::CVDBThread(), CVecscreenRun::CVecscreenRun(), CVisRangeGlyph::CVisRangeGlyph(), CWGSDataLoader::CWGSDataLoader(), CWriteDB_Column::CWriteDB_Column(), CWriteDB_CreateOidMaskDB(), CWriteDB_Isam::CWriteDB_Isam(), CWriteDB_Volume::CWriteDB_Volume(), CwxSeqTextViewOptions::CwxSeqTextViewOptions(), DbIndexInit(), CPluginReply::DecomposeRaw(), CNCBlobAccessor::Deinitialize(), CCmdFactory::DeleteGeneXRefs(), CThread::Detach(), CThread::Discard(), CDockContainer::DisconnectTrees(), CDBConnectionFactory::DispatchServerName(), CRemoveBioseqChecker::Do(), COpenViewManager::DoAsyncConversion(), CDeltaBlastApp::DoPsiBlastIterations(), CColumnarVCFLoaderManager::DoTransition(), CSplitDataLoader::DropTSE(), CSeqFormatter::DumpAll(), embl_refs(), CGBSeqFormatter::EndSection(), CPrefetchSequence::EnqueNextAction(), CTreeQueryExec::EvalStart(), CDBConnectionFactory::CServiceInfo::Exclude(), CMacroEngine::Exec(), NAutomation::SNetCacheService::ExecGetBlob(), NAutomation::CAutomationObject::ExecNew(), CCmdDelSeq_feat::Execute(), CChangeSeqdescTitleCommand::Execute(), C5ColObjectLoader::Execute(), CBedObjectLoader::Execute(), CFastaObjectLoader::Execute(), CGBFlatFileObjectLoader::Execute(), CGffObjectLoader::Execute(), CPslObjectLoader::Execute(), CRMObjectLoader::Execute(), CVcfObjectLoader::Execute(), CWigObjectLoader::Execute(), CHttpRequest::Execute(), CEventHandler::CPostQueue::ExecuteFirstRequest(), CMacroWorker::ExecuteMacros(), CReportNode::Export(), CDiscrepancyContext::Extend(), ExtendCDSToStopCodon(), CAutogeneratedExtendedCleanup::ExtendedCleanupSeqFeat(), ExtendToGapsOrEnds(), ExtendToStopCodon(), CBlastDatabaseArgs::ExtractAlgorithmOptions(), CPsiBlastArgs::ExtractAlgorithmOptions(), CDeltaBlastArgs::ExtractAlgorithmOptions(), CIgBlastArgs::ExtractAlgorithmOptions(), CWriteDB_Impl::ExtractBioseqDeflines(), ExtractBiostrucAndBioseqs(), ExtractBlast4Request(), CSubmissionWizard::ExtractDescriptor(), CBlastDBExtractor::ExtractFasta(), CAlignFormatUtil::ExtractQuerySeqAlign(), TAsyncToken::FeatTree(), FeatureClauseFactory(), CTMS_BLAST_Client::Fetch(), CTMS_CreateRemoteTrack_Client::Fetch(), CTMS_CreateTrackSet_Client::Fetch(), CTMS_CreateUserTrack_Client::Fetch(), CTMS_DisplayTrack_Client::Fetch(), CTMS_ItemResolver_Client::Fetch(), CTMS_RemoveUserTrack_Client::Fetch(), CTMS_SupportedAssemblies_Client::Fetch(), CTMS_SwitchContext_Client::Fetch(), CTMS_TrackAttrValue_Client::Fetch(), CTMS_TrackSet_Client::Fetch(), pub_report::CUnpublishedReport::FetchPub(), CPubFix::FetchPubPmId(), FetchSequenceViaHTTP(), fill_orgref(), CSeqAlignFilter::FilterByAccessionType(), CSeqAlignFilter::FilterByTaxonomy(), CMultiAlignerFixture::Finalize(), CNCBlobVerManager::FinalizeWriting(), IEditingActionBiosource::Find(), IEditingActionDesc::Find(), CEditingActionDescUserObject::Find(), IEditingActionInst::Find(), CEditingActionDescLocalId::Find(), CEditingActionDescComment::Find(), IEditingActionFeat::Find(), CEditingActionFeatGeneLocusPlain::Find(), CEditingActionFeatGeneLocusRna::Find(), CEditingActionFeatGeneLocusCdsGeneProt::Find(), FindCompartments(), CSeq_align::FindExt(), CSeq_feat::FindExt(), IEditingActionFeat::FindFeatForAnotherFeat(), CProSplign::CImplementation::FindGlobalAlignment_stage1(), IEditingActionFeat::FindOrCreateProtFeat(), IEditingActionDesc::FindRelated(), CEditingActionDescUserObject::FindRelated(), IEditingActionFeat::FindRelated(), CEditingActionFeatGeneLocus::FindRelated(), IEditingActionFeat::FindRelatedFeatForAnotherFeat(), IEditingActionFeat::FindRelatedOrCreateProtFeat(), sequpd::FixCollidingIDs_Bioseq(), CPubFix::FixPub(), CHttpRequest::FormData(), fta_build_ena_user_object(), fta_build_structured_comment(), fta_create_user_field(), fta_get_citgen(), fta_get_dblink_user_object(), fta_get_mga_user_object(), fta_get_orgref_byid(), fta_get_project_user_object(), fta_get_seqloc_int_whole(), fta_get_user_field(), fta_parse_tpa_tsa_block(), fta_replace_org(), CFlatGatherer::Gather(), gb_refs_common(), CFlatFileGenerator::Generate(), CDeflineGenerator::GenerateDefline(), CAutoAddDBLink::Get(), CScore_StartStopCodon::Get(), CCDDBlobId::Get(), get_art(), get_auth_consortium(), get_auth_from_toks(), get_bioseq(), get_book(), get_date(), get_lanl_date(), get_muid(), get_pat(), get_s_date(), get_std_auth(), get_sub(), get_sub_gsdb(), get_thesis(), get_whole_book(), IEditingAction::GetActionCommand(), IIndexedFeatureReader::GetAnnotId(), CCodonStartColumn::GetApplyObjects(), GetBiosampleData(), CSeqDBVol::GetBioseq(), CCdCore::GetBioseqForIndex(), CObjMgr_RemoteQueryData::GetBioseqSet(), CObjMgrFree_RemoteQueryData::GetBioseqSet(), CCDDClientPool::GetBlobBySeq_id(), CCDDClientPool::GetBlobBySeq_ids(), CCDDClientPool::GetBlobIdBySeq_id(), CLayoutGroup::GetChild(), CPhyloTree::GetColorTable(), CFuseFeaturesDlg::GetCommand(), CmRNAFromGeneCdsExon::GetCommand(), CtRNAFromGene::GetCommand(), CAuthorReplacePanel::GetCommand(), CAddLinkageToGaps::GetCommand(), CAppendModToOrg::GetCommand(), CCountryFixup::GetCommand(), CUnculTaxTool::GetCommandFromValuesTable(), GetCommonTax(), CEUtils_Request::GetConnContext(), CPhrap_Sequence::GetContig(), CGBProject::GetData(), CBlastServices::GetDatabaseInfo(), CWriteUtil::GetDescriptor(), CSGDataSourceContext::GetDS(), CEditObjectSeq_desc::GetEditCommand(), CEditObjectSeq_feat::GetEditCommand(), CEditObjectSet::GetEditCommand(), CEditObjectSubmit_block::GetEditCommand(), CScope_Impl::GetEditHandle(), GetEmblDate(), GetEmblDescr(), GetEmblGBBlock(), GetEmblOrgRef(), NSnpBins::GetEntry(), CGeneFinder::GetFeatViaSubsetThenExtremesIfPossible_Helper(), CSeqDBAliasFile::GetFilterTree(), GetGBBlock(), GetGenBankDescr(), CPhyloTree::GetGraphicsModel(), CSeqVecSeqInfoSrc::GetId(), CPhrap_Seq::GetId(), CBLASTDatabases::GetInstance(), CGiCache::GetInstance(), CSeqFetchQueue::GetInstance(), CTaxonCache::GetInstance(), CAppJobDispatcher::GetInstance(), CTaxIdHelper::GetInstance(), CWinMaskerFileStorage::GetInstance(), CUIToolRegistry::GetInstance(), CSeq_id_Mapper::GetInstance(), CTaxTreeDS_ObjMgr::GetIterator(), CGraphTrack::GetLegend(), GetLoc(), CFeatureGenePanel::GetLocationForGene(), CWeakObjectLocker< C >::GetLockedObject(), CWeakInterfaceLocker< IAlignRow >::GetLockedObject(), CMacroSimple::GetMacro(), CCreatedFeat_Ref::GetMappedFeature(), CCreatedFeat_Ref::GetMappedLocation(), CTextPanel::GetMenuContributor(), CProjectTreeView::GetMultiple(), CFeatureGenePanel::GetNewGene(), CFastaBioseqSource::GetNext(), CClusterDBSource::GetNext(), CPrefetchBioseqActionSource::GetNextAction(), CPrefetchFeat_CIActionSource::GetNextAction(), CBlastInput::GetNextSeqBatch(), CMaskBDBReader::GetNextSequence(), CSeqDBGiListSet::GetNodeIdList(), CProjectStorage::GetObject(), CDUpdater::GetOneBioseqFromSeqEntry(), GetOverlappingFeatures(), GetPDBBlockFromSeqEntry(), CSearchJobBase::GetProgress(), GetProtRefDescr(), GetProtRefSeqId(), GetPubRef(), CPhrap_Sequence::GetRead(), GetReplacementSeqIds(), CSeqIdFixDlg::GetReplacementTable(), CNcbiResourceInfoFile::GetResourceInfo_NC(), CEditAppJob::GetResult(), CRemoteBlast::GetResultSet(), GetRetranslateCDSCommand(), GetRnaRef(), GetScope(), CScoreLookup::GetScore(), CMacroStringConstraintPanel::GetSearchFunc(), CProjectTreeView::GetSearchLoc(), CTextPanelContext::GetSelectedObjects(), CProjectTreeView::GetSelection(), CPhyTreeView::GetSelection(), CWGSSeqIterator::GetSeq_descr(), CWGSScaffoldIterator::GetSeq_descr(), CWGSProteinIterator::GetSeq_descr(), CLocationListCtrl::GetSeq_loc(), CRemoteBlast::GetSeqAlignSets(), CMytestApplication::GetSeqEntry(), CSeqSetPresenter::GetSeqEntry(), CMultiReader::GetSeqEntry(), CCdCore::GetSeqEntryForIndex(), CFlatFileGenerator::GetSeqFeatText(), CRowDisplayStyle::GetSeqGraphicConfig(), GetSeqIdProblems(), CSeq_loc_Mapper_Options::GetSeqInfo(), GetSequenceLengthAndId(), CProjectTreeView::GetSingleObject(), CSraRun::GetSpotEntry(), GetSprotDescr(), GetSPSeqLoc(), CStringConstraintPanel::GetStringConstraint(), CMacroStringConstraintPanel::GetStringConstraint(), CSuspectAddConstraint::GetStringConstraint(), CAdvStringConstraintPanel< T >::GetStringConstraint(), CGenBankUILoadManager::GetTask(), CTaxon1::GetTreeIterator(), GetTrnaAnticodon(), CValidator::GetTSACDSOnMinusStrandErrors(), CValidator::GetTSAConflictingBiomolTechErrors(), CValidator::GetTSANStretchErrors(), CDataSource::GetTSE_LoadLock(), CDataSource::GetTSE_LoadLockIfLoaded(), CDataSource_ScopeInfo::GetTSE_Lock(), CObjMgr_QueryFactory::GetTSeqLocVector(), CSingleRefGeneTrackLocPanel::GetUser_field(), CCompareWithBiosample::GetValuesTableFromSeqEntry(), CFeatureTableCommandConverter::GetValuesTableFromSeqEntry(), CApplyStructCommentTreeItemData::GetVariables(), CVDBBlastUtil::GetVDBSeqIdFromOID(), CCrossAlignView::GetVisibleRanges(), CDotMatrixView::GetVisibleRanges(), GetXrpForOverlap(), IEditingActionFeat::GoToProtFeature(), CAlignGroup::GroupByLikeTaxIds(), CPubField::GuessDate(), CFeaturePanel::HitTest(), CLinkedFeatsGroup::HitTest(), CGlyphContainer::HitTest(), CGraphOverlay::HitTest(), CSeqGlyph::HitTest(), CSequenceTrack::HitTest(), CAlignFormatUtil::HspListToHitMap(), IdentifierToSeqId(), ImpFeatPub(), UpdateViewer::ImportStructure(), CNcbiRegistry::IncludeNcbircIfAllowed(), CBulkOtherAddPanel::Init(), CCdsToMatPeptide::Init(), CConvertCdsWithGapsToMiscFeat::Init(), CFixForTransSplicing::Init(), CAlignOtherAddPanel::Init(), CAssemblyTrackingPanel::Init(), CMacroEditor::Init(), CRefGeneTrackingPanel::Init(), CAsnObjectLoader::Init(), CFastaObjectLoader::Init(), CGBFlatFileObjectLoader::Init(), CTextAlignObjectLoader::Init(), CObjectListWidgetSel::Init(), CAltValidator::Init(), CBlastnApp::Init(), CBlastpApp::Init(), CBlastxApp::Init(), CDeltaBlastApp::Init(), CPsiBlastApp::Init(), CRPSBlastApp::Init(), CRPSTBlastnApp::Init(), CTblastnApp::Init(), CTblastxApp::Init(), CIgBlastnApp::Init(), CIgBlastpApp::Init(), CMagicBlastApp::Init(), CRMBlastnApp::Init(), SGridWorkerNodeImpl::Init(), CCrossAlnDemoDlg::Init(), CAlignMultipleDemoDlg::Init(), CwxDemoAlignTableFrame::Init(), CSelectFeatureDlg::Init(), CSourceOtherPanel::Init(), CHitMatrixDemoDlg::Init(), CTableXformPanel::Init(), CFlatFileDemoDlg::Init(), CSeqGraphicDemoDlg::Init(), CSeqTextDemoDlg::Init(), CNetBlastJobDescriptor::Init(), CFeatTableDS::Init(), CPhyloTreeDataSource::Init(), CSparseAlignment::Init(), CTreeGraphicsModel::Init(), CSparseMultiDataSource::Init(), CGridWidget::Init(), CAlnMultiDSBuilder::Init(), CHitMatrixDSBuilder::Init(), CHitMatrixDataSource::Init(), CGlTexture::Init(), CBlastKmerApplication::Init(), CXcompareAnnotsApplication::Init(), CVDBBlastnApp::Init(), CVDBTblastnApp::Init(), CBlastSearchTask::Init_RetrieveRID(), CBlastSearchTask::Init_SubmitSearch(), CSGAlignmentDS::InitAlignScoreCache(), CSeqGraphicWidget::InitBioseqEditor(), CSearch< LEGACY, NHITS >::InitBlast(), CSeqGraphicConfig::InitCategoryConfig(), CwxDemoAlignTableFrame::InitData(), CSeqGraphicPane::InitDataSource(), CGff3ImportData::Initialize(), C5ColImportData::Initialize(), CSeq_id_Which_Tree::Initialize(), InitializeRemoteBlast(), InitializeSubject(), CSimpleB2SWrapper::InitializeToDefaults(), CGffFeatureRecord::InitLocation(), CSeqTextPanel::InitObject(), InitSplicedsegFromPairwiseAln(), CTableView::InitView(), CVcfTableView::InitView(), CTextPanel::InitWidget(), CSeqDesktopPanel::InitWidget(), CWriteDB_PackedSemiTree::Insert(), IPhyloTreeRender::IPhyloTreeRender(), CQueryImpl::IsFinished(), CThread::Join(), JoinCompartment(), journal(), CmRNACDSLinker::LinkSelectedFeatures(), CWndLayoutReg::Load(), CGBProjectHandle::Load(), CMetaRegistry::Load(), CwxDemoAlignTableFrame::LoadAccession(), CwxDemoFeatureTableFrame::LoadAccession(), CSGAlignmentDS::LoadAlignments(), CTSE_Default_Assigner::LoadAnnot(), LoadASNFromIstream(), CStructuredCommentsReader::LoadComments(), CNcbiApplicationAPI::LoadConfig(), CSGAlignmentDS::LoadCoverageGraph(), CSGTraceGraphDS::LoadData(), CLDBlockDS::LoadData(), CSGSnpDS::LoadData(), CBinsDS::LoadData(), CSGHapmapDS::LoadData(), CClickableSortUniqueCount::LoadData(), CValidatePanel::LoadData(), CMultiReader::LoadDescriptors(), LoadFeat(), CwxDemoAlignTableFrame::LoadFile(), CwxDemoFeatureTableFrame::LoadFile(), CRemoteBlast::LoadFromArchive(), CAsnObjectLoader::LoadFromStream(), CFileLoadManager::LoadRegisteredManagers(), CCacheReader::LoadSeq_idBlob_ids(), CGeneModelConfig::LoadSettings(), CGeneModelConfig::LoadSettingsPartial(), CMultiReader::LoadTemplate(), CRgbaGradColorTable::LoadTexture(), CEditObjectSeq_desc::LocationChange(), CTaxon1::Lookup(), CTaxon1::LookupMerge(), CPrefetchThreadOld::Main(), CTestThread::Main(), CBlastnNode::Main(), CBlastpNode::Main(), CBlastxNode::Main(), CRPSBlastNode::Main(), CRPSTBlastnNode::Main(), CTblastnNode::Main(), CIgBlastnApp::CIgWorker::Main(), CIgBlastnApp::CIgFormatter::Main(), CMagicBlastThread::Main(), PssmMaker::make(), CUser_object::CRefGeneTrackingAccession::MakeAccessionField(), makeCleanupChange(), MakeCLoc(), FeatUtil::MakeCodeBreak(), COrgName::MakeCommon(), CGlOsContext::MakeCurrent(), CDBConnectionFactory::MakeDBConnection(), MakeEmptyResults(), CBlobSplitterImpl::MakeID2Chunk(), CBlobSplitterImpl::MakeID2SObjects(), IQueryFactory::MakeLocalQueryData(), MakeLocusSeqId(), CMappedGraph::MakeMappedLoc(), MakemRNAforCDS(), IQueryFactory::MakeRemoteQueryData(), CAliToSeq_align::MakeSeq_align(), CSeqAnnotFromFasta::MakeSeqAnnotFromFasta(), CIdMapper::Map(), CSeq_loc_Mapper_Base::Map(), MaskedQueryRegionsToPackedSeqLoc(), CChangePhyloPropertyCmd::Merge(), CTable2AsnContext::MergeSeqDescr(), CTrackConfigManager::MergeTrackConfig(), CEditingActionBiosourcePrimers::Modify(), CEditingActionBiosourceOrgMod::Modify(), CEditingActionBiosourceSubSource::Modify(), CEditingActionBiosourceAllNotes::Modify(), CEditingActionBiosourceDbxref::Modify(), IEditingActionDesc::Modify(), CEditingActionDescPubPmid::Modify(), CEditingActionFeatGbQual::Modify(), CEditingActionFeatGbQualTwoNames::Modify(), CEditingActionFeatDbxref::Modify(), CEditingActionFeatTranslExcept::Modify(), CEditingActionFeatRnaQual::Modify(), CEditingActionFeatSynonym::Modify(), CEditingActionFeatActivity::Modify(), CEditingActionFeatEcNumber::Modify(), CEditingActionFeatFunction::Modify(), CEditingActionFeatProduct::Modify(), CDUpdater::modifySeqAlignSeqEntry(), CEditObjectSeq_desc::MolInfoLocationChange(), CSeqGridTableNav::NavigateToTextViewPosition(), NCBITEST_AUTO_INIT(), CRegistryFile::NewRegistryObject(), CSequenceIStreamBlastDB::next(), CAsn2FastaApp::ObtainSeqEntryFromSeqSubmit(), CSeqGraphicDemoDlg::OnAccClick(), CSeqTextDemoDlg::OnAccClick(), CSequesterSets::OnAccept(), CAddSuspectProductRule::OnAccept(), CSubPrep_panel::OnAddSequenceBtnClick(), CPhyloForce::OnAppJobNotification(), CAlnVecMultiDataSource::OnAppJobNotification(), CSparseMultiDataSource::OnAppJobNotification(), CAttribTableColumnIdPanel::OnApplyNoCloseClick(), CPhyTreeView::OnBioTreeChanged(), CSubPrep_panel::OnButton17Click(), CConvertCdsToMiscFeat::OnChoiceChanged(), CSubmitBlockDlg::OnClearBtnClick(), CNetScheduleHandler::OnClose(), CNetStorageHandler::OnClose(), CDesktopViewContext::OnCutSelection(), CSeqTextDemoDlg::OnFileClick(), CAgpToSeqEntry::OnGapOrComponent(), CStructuredCommentPanel::OnImport(), CSubmitBlockDlg::OnImportBtnClick(), CValidatePanel::OnJobFailed(), job_future_base::OnJobResult(), CClickableSortUniqueCount::OnJobResult(), CValidatePanel::OnJobResult(), CLayoutTrackHandler::OnLeftDblClick(), CLayoutTrackHandler::OnLeftDown(), CDiscrepancyPanel::OnListClk(), CValidatePanel::OnListItemSelected(), CFlatFileDemoDlg::OnLoadFileClick(), CLayoutTrackHandler::OnMotion(), CDesktopViewContext::OnPasteSelection(), CAssemblyTrackingPanel::OnPopulateBtnClick(), CProjectTableView::OnProjectChanged(), CPhyloTreeWidget::OnSaveImages(), CFrameworkDemoGUI::OnSaveLayoutClick(), CSequesterSets::OnSequester(), CPhyTreeView::OnSomethingEdited(), CSubPrep_panel::OnStartNewClick(), CTaxTreeTestDlg::OnSubmitClick(), CSniffReader::OnTopObjectFoundPost(), CIndexerOpenViewExtension::OnViewOpen(), CBGZFStream::Open(), CHugeAsnReader::Open(), CAppDialogs::OpenViewlDialog(), FNodeFingerprintEquals::operator()(), FFindVisibleNode::operator()(), IEditMacroFunction::operator()(), SRetryProcessing::operator()(), SCigarAlignment::operator()(), SBlobCopier::operator()(), CIdResolverCanonical::operator()(), CWinMaskUtil::CInputBioseq_CI::operator++(), CBamRefSeqIterator::operator++(), CBamAlignIterator::operator++(), CBamRefSeqIterator::operator=(), CFuncWithArgs::operator=(), CRgbaGradColorTable::operator=(), CRef< CAlnMixSegment >::operator=(), operator>>(), CSeqDBVol::OptimizeGiLists(), CAgpConverter::OutputBioseqs(), CRepeatMaskerReader::ParseRecord(), CChangePhyloSelectionSetCmd::PerformEdit(), CMytestApplication::PlayAroundWithSuggestIntervals(), PopulatePcrPrimers(), CAbstractProjectItem::PostRead(), variation_ref::CVariationUtil::PrecursorToProt(), CDataSource::Prefetch(), PrintASN1(), CBlastFormatterApp::PrintFormattedOutput(), CBlastFormatterVdbApp::PrintFormattedOutput(), PrintSAMHeader(), CSplitCacheApp::ProcessBlob(), CSplitCacheApp::ProcessEntry(), CBiosampleChkApp::ProcessOneFile(), CBedAnnotAssembler::ProcessRecord(), ProcFeatBlk(), ProcNucProt(), CFeaturePropagator::Propagate(), PropagateToTarget(), PSSMWrapper::PSSMWrapper(), CDiscrepancyContext::PubdescObjRef(), QSbuf_To_Single_Qscore_SeqGraph(), QualsToSeqID(), CGlimmerReader::Read(), CHugeFileProcess::Read(), CBasicFastaWrapper::ReadFile(), CBlastNodeMailbox::ReadMsg(), CObjectIStream::ReadObject(), CLocalFileRestorer::ReadObjectFromFile(), CFastaReader::ReadOneSeq(), CObjectIStream::ReadPointer(), CObjectIStreamAsnBinary::ReadPointer(), CPhrap_Contig::ReadReadLocation(), CCDDClient::ReadReply(), CHgvsReader::ReadSeqAnnot(), CVcfReader::ReadSeqAnnot(), CWiggleReader::ReadSeqAnnot(), CUCSCRegionReader::ReadSeqAnnot(), CReaderBase::ReadSeqAnnot(), CFeatureTableReader_Imp::ReadSequinFeatureTable(), ReadTabDelimitedTable(), CColumnarVCFReader::ReadVariantsForChrs(), CFeatureGenerator::SImplementation::RecomputePartialFlags(), CBlastDbBlob::ReferTo(), CMultiDictionary::RegisterDictionary(), CLayoutTrack::RegisterIconImage(), CNetBlastJobDescriptor::Release(), CRequestContextSwitcher::Release(), CRequestContextGuard_Base::Release(), CTSE_LoadLockGuard::Release(), CObjectManager::ReleaseDataSource(), CAppJobDispatcher::ReleaseInstance(), CTSE_LoadLock::ReleaseLoadLock(), CSimpleOM::ReleaseOM(), CTSE_ScopeInfo::ReleaseUsedTSEs(), CMetaRegistry::SEntry::Reload(), variation::CVariationUtil::RemapToAnnotatedTarget(), CCmdFactory::RemoveCitations(), CScope_Impl::RemoveDataLoader(), CScope_Impl::RemoveTopLevelSeqEntry(), CSeqTestApplication::Render(), CSubtreeBoundary::RenderBoundaryVbo(), IPhyloTreeRender::RenderPdf(), CFileAutoLoader::ResentCurrentManager(), job_future_base::reset(), CUIToolRegistry::Reset(), CAlnMixMerger::Reset(), CPSGL_RequestTracker::Reset(), CRawWiggleTrack::Reset(), CInitMutex< SAnnotSetCache >::Reset(), CSNPFeatureParams::Reset(), CClusterer::Reset(), CWeakRef< CQueue >::Reset(), CMappedGraph::Reset(), CHeapScope::Reset(), CSeq_loc_Conversion_Set::Reset(), CSeq_annot_SNP_Info::Reset(), CTSE_LoadLock::Reset(), CSeq_feat_Handle::Reset(), CBlobSplitterImpl::Reset(), CTSE_Handle::Reset(), CCSraShortReadIterator::Reset(), CSNPDbTrackIterator::Reset(), CSNPDbSeqIterator::Reset(), CSNPDbGraphIterator::Reset(), CWGSGiIterator::Reset(), CWGSProteinIterator::Reset(), CWGSFeatureIterator::Reset(), CSGAlignmentDS::ResetAlnScoringJob(), IEditingAction::ResetChangedDescriptors(), CDL_AssmInfoResponse_Base::ResetData(), CPluginArg_Base::ResetData(), CBlast4_seq_part_data_Base::ResetData(), CGBProject_ver2_Base::ResetData(), CLoaderDescriptor_Base::ResetData(), CViewDescriptor_Base::ResetData(), CUser_field_Base::ResetData(), CID2_Reply_Get_Blob_Base::ResetData(), CID2_Reply_ReGet_Blob_Base::ResetData(), CID2S_Reply_Get_Chunk_Base::ResetData(), CID2S_Reply_Get_Split_Info_Base::ResetData(), CEntrez_general_Base::ResetData(), CProject_Base::ResetData(), CSeq_annot_Base::ResetData(), CSeqEdit_Cmd_AddAnnot_Base::ResetData(), CSeqEdit_Cmd_ChangeSeqAttr_Base::ResetData(), CSeqEdit_Cmd_ChangeSetAttr_Base::ResetData(), CSeqEdit_Cmd_RemoveAnnot_Base::ResetData(), CSeqEdit_Cmd_ReplaceAnnot_Base::ResetData(), CSeq_feat_Base::ResetData(), CSeqFeatXref_Base::ResetData(), CVariation_ref_Base::ResetData(), CScaled_int_multi_data_Base::ResetData(), CScaled_real_multi_data_Base::ResetData(), CSeqTable_column_Base::ResetData(), CSeq_submit_Base::ResetData(), CVariation_Base::ResetData(), pub_report::CUnpublishedReport::ResetDate(), SAnnotSelector::ResetFeatComparator(), CSearch< LEGACY, NHITS >::ResetGlobals(), CPluginLibInfo_Base::ResetInfo(), CWorkspaceFolder_Base::ResetInfo(), CBlast4_get_search_info_reply_Base::ResetInfo(), CBlast4_get_search_info_request_Base::ResetInfo(), CProjectFolder_Base::ResetInfo(), CID2S_Bioseqs_Info_Base::ResetInfo(), CID2SNPProcessor_Impl::ResetIteratorCache(), CWGSClient::ResetIteratorCache(), CSeq_loc_Conversion::ResetKeepPartial(), CGBDocument::ResetLoading(), CSeq_loc_Mapper_Message::ResetObject(), CCreatedFeat_Ref::ResetRefs(), IEditingActionFeat::ResetScope(), CScoreCache::ResetScores(), CFlatFileContext::ResetSeqEntryIndex(), CHugeAsnReader::ResetTopEntry(), CGlOsContext::Resize(), CRegistryReadView::ResolveField(), CSequesterSets::RestoreTextView(), CEditingBtnsPanel::rRNAtoDNA(), CDeltaBlast::Run(), CLocalBlast::Run(), CLocalSeqSearch::Run(), CRemoteSeqSearch::Run(), CRemotePssmSearch::Run(), CBlastTracebackSearch::Run(), CIgBlast::Run(), CAsnExportJob::Run(), CDataLoadingAppJob::Run(), CProjectServiceTestJob::Run(), CAlignTabExportJob::Run(), CNetBlastSubmittingJob::Run(), CNetBlastMonitoringJob::Run(), CFastaAlignExportJob::Run(), CPhyExportJob::Run(), C5ColExportJob::Run(), CAgpExportJob::Run(), CFastaExportJob::Run(), CFlatFileExportJob::Run(), CGffExportJob::Run(), CGtfExportJob::Run(), CWiggleExportJob::Run(), CEditAppJob::Run(), CJobAdapterJob< TInput, TOutput >::Run(), CJobFutureJob< _Fty, void >::Run(), CBuildAlnVecJob::Run(), CBuildSparseAlnJob::Run(), CFeatureLoadingJob::Run(), CScoringJob::Run(), CTableDataSUCJob::Run(), CTableDataValidateJob::Run(), CTextRetrieveJob::Run(), CSeqGraphicJob::Run(), CSeqTextJob::Run(), CDemoContigAssemblyApp::Run(), CNgAlignApp::Run(), CSRSearchApplication::Run(), CIdMapperTestApp::Run(), COMSSA::Run(), CBlastFormatterApp::Run(), CBlastnApp::Run(), CBlastpApp::Run(), CBlastxApp::Run(), CDeltaBlastApp::Run(), CPsiBlastApp::Run(), CSeedTopApp::Run(), CTblastnApp::Run(), CTblastxApp::Run(), CBlastFormatterVdbApp::Run(), CIgBlastnApp::Run(), CIgBlastpApp::Run(), CMagicBlastApp::Run(), CRMBlastnApp::Run(), CSplignApp::Run(), CSrcChkApp::Run(), CGBProjectTool::Run(), CDocLoadingJob::Run(), CAttachProjectItemsJob::Run(), CTableDataVcfJob::Run(), CFeatCompareJob_Align::Run(), CFeatCompareJob_Location::Run(), CFeatureRetrievalJob::Run(), CFlatFileSequenceListJob::Run(), CTrackInitializationJob::Run(), CAnnotMetaDataJob::Run(), CAnnotWriterApp::Run(), CAsn2FastaApp::Run(), CAsn2FlatApp::Run(), CDiscRepApp::Run(), pub_report::CPubReportApp::Run(), CCompartmentFinder< THit >::Run(), CAgpFastaComparator::Run(), SGridWorkerNodeImpl::Run(), CThread::Run(), CMagicBlast::Run(), CGumbelParamsCalc::Run(), CScorePValuesCalc::Run(), CGumbelParamsApplication::Run(), CBlastKmerApplication::Run(), CXcompareAnnotsApplication::Run(), CAsnCacheTestApplication::Run(), CPrimeCacheApplication::Run(), CAsnSubCacheCreateApplication::Run(), CBiosampleChkApp::Run(), CGuideTreeApplication::Run(), CVDBBlastnApp::Run(), CVDBTblastnApp::Run(), CConversionApp::Run(), CDemoApp::Run(), CTAbleValApp::Run(), CTestBMApp::Run(), CEntrez2ClientApp::Run(), CClientGenomicCollectionsSvcApplication::Run(), CAlnMrgApp::Run(), CBDB_Env::RunBackgroundWriter(), CMagicBlast::RunEx(), CQueueDataBase::RunExecutionWatcherThread(), CQueueDataBase::RunNotifThread(), CQueueDataBase::RunPurgeThread(), CMacroFlowEditor::RunScript(), CQueueDataBase::RunServiceThread(), CNetStorageServer::RunServiceThread(), CTestBlastp_All::RunTest(), CTestProtProd_ProteinLength::RunTest(), CTestProtProd_Cdd::RunTest(), CTestProtProd_EntrezNeighbors::RunTest(), CTestSeqId_Biomol::RunTest(), CTestSingleAln_All::RunTest(), CTestTranscript_CountCdregions::RunTest(), CTestTranscript_TranscriptLength::RunTest(), CTestTranscript_PolyA::RunTest(), CTestTranscript_Orfs::RunTest(), CTestTranscript_CountAmbiguities::RunTest(), s_AddCommand(), s_Align2Annot(), s_AlignSet2Annot(), CIgBlast::s_AppendResults(), s_ArePrimersUnique(), s_BLAST_OneSubjectResults2CSeqAlign(), s_BuildGetSeqPartsRequest(), s_BuildGetSeqRequest(), s_CalcGumbelParams(), s_CheckEmptyLists(), s_CheckMinWordSize(), s_CollapseProjectFolder(), s_CombineDustMasksWithUserProvidedMasks(), CMacroFunction_DeltaSeqToRaw::s_ConvertDeltaToRaw(), CSeq_loc_Conversion::s_ConvertToMix(), s_CreateMappingInfo(), CAgpToSeqEntry::s_DefaultSeqIdFromStr(), s_DupSequencesTest(), CBlastArgs::s_ExtractBlastArgs(), CMacroFunction_LookupPub::s_GetArticleFromEntrezById(), s_GetAuthorList(), s_GetBlastQueryVector(), s_GetClipLoc(), s_GetPubImprint(), s_GetQuerySequence(), s_GetRnaMappingLocs(), s_GetScope(), s_GetUngapLoc(), s_ImportQueries(), s_InitializeExportStrategy(), s_InitializeSubject(), s_MakeQueryFactory(), s_MakeTitle(), s_MultiSeqSrcNew(), s_OOFBlastHSP2SeqAlign(), s_ParseTRnaFromAnticodonString(), s_ProcessIntraScaffoldTail(), s_QueryFactorySrcNew(), s_QueryVectorToBioseqSet(), s_ReadData(), s_ReadObject(), CFixFeatureId::s_ReassignFeatureIds(), s_RemapToSubjectLoc(), s_Seq_align_Seq_loc(), s_SeqAlignSetToXMLHsps(), s_SeqAlignToXMLHit(), s_SetAuthList(), s_SetBioSourceField(), s_SetFieldAt(), s_SetImprint(), s_SetReplaces(), s_SetSeqdescUser(), s_SplitAlignVectorBySubjects(), s_StringToCodeBreak(), s_TestFastaRoundTrip(), CFixFeatureId::s_UpdateFeatureIds(), CAlignSort::SAlignExtractor::SAlignExtractor(), CSequenceEditingEventHandler::SaveDescriptors(), CDockContainer::SaveLayout(), CFastaReader::SaveMask(), CPhyloSelectionSet::SaveToUserObject(), CTreeLabel::SaveToUserObject(), CGBProjectHandle::SaveViewSettings(), ScanForCpGs(), SCoverageData::SCoverageData(), CSearch< LEGACY, NHITS >::Search(), CMergeTree::Search(), CProSplign::CImplementation::SeekStartStop(), CDiscrepancyContext::SeqdescObjRef(), CScopedProcess::SeqEntryFinalize(), CScopedProcess::SeqEntryInitialize(), CProsplignProcess::SeqEntryProcess(), CDiscrepancyContext::SeqFeatObjRef(), SeqLocToBioseq(), CAutoAddDesc::Set(), CMappedGraph::Set(), CMappedFeat::Set(), CHeapScope::Set(), CAbstractProjectItem::Set(), CAuthorAffiliationPanel::SetAffil(), CReportEntry::SetAlignment(), CDUpdater::SetAlignments(), CSingleAuthorPanel::SetAuthor(), CGlRenderBuffer< T >::SetBuffer(), CCdsGlyph::SetCdsConfig(), CPublishedRefPanel::SetCitArt(), CSingleCDSExceptionPanel::SetCodeBreak(), CHistConfigDlg::SetConfig(), CwxHairlineDlg::SetConfig(), CTranslationGlyph::SetConfig(), CTrackContainer::SetConfigMgr(), CSuspectAddConstraint::SetConstraint(), CGBBlockField::SetConstraint(), CGenbankKeywordField::SetConstraint(), CMolInfoField::SetConstraint(), CSrcTablePrimerColumn::SetConstraint(), CFlatItemFormatter::SetContext(), CSGGenBankDS::SetCoordMapper(), CProjectItem::SetCreateDate(), CDL_AssmInfoResponse_Base::SetData(), CPluginArg_Base::SetData(), CBlast4_seq_part_data_Base::SetData(), CGBProject_ver2_Base::SetData(), CLoaderDescriptor_Base::SetData(), CViewDescriptor_Base::SetData(), CUser_field_Base::SetData(), CID2_Reply_Get_Blob_Base::SetData(), CID2_Reply_ReGet_Blob_Base::SetData(), CID2S_Reply_Get_Chunk_Base::SetData(), CID2S_Reply_Get_Split_Info_Base::SetData(), CEntrez_general_Base::SetData(), CProject_Base::SetData(), CSeq_annot_Base::SetData(), CSeqEdit_Cmd_AddAnnot_Base::SetData(), CSeqEdit_Cmd_ChangeSeqAttr_Base::SetData(), CSeqEdit_Cmd_ChangeSetAttr_Base::SetData(), CSeqEdit_Cmd_RemoveAnnot_Base::SetData(), CSeqEdit_Cmd_ReplaceAnnot_Base::SetData(), CSeq_feat_Base::SetData(), CSeqFeatXref_Base::SetData(), CVariation_ref_Base::SetData(), CScaled_int_multi_data_Base::SetData(), CScaled_real_multi_data_Base::SetData(), CSeqTable_column_Base::SetData(), CSeq_submit_Base::SetData(), CVariation_Base::SetData(), CAlnTableWidget::SetDataSource(), CAnnotCompareWidget::SetDataSource(), CFastaTextDisplay::SetDataSource(), CFeatTableWidget::SetDataSource(), CNetBLAST_DMSearchForm::SetDataSource(), CSeqTextWidget::SetDataSource(), CTaxTreeBrowser::SetDataSource(), CQueryParsePanel::SetDataSource(), pub_report::CUnpublishedReport::SetDate(), CWrapperUpper::SetDb(), CLDS2_Manager::SetDbFile(), CVariation_ref::SetDeletionInsertion(), IEditingActionBiosource::SetDesc(), IEditingActionDesc::SetDesc(), CFeaturePanelDS::SetDSContext(), CAlignmentTrack::SetDSContext(), CFeaturePanel::SetDSContext(), CSeqGraphicRenderer::SetDSContext(), CSeq_loc_Conversion::SetDstLoc(), CArgDescMandatory::SetErrorHandler(), CGridWidget::SetEventExt(), CFeaturePanel::SetExternalGlyphs(), IEditingActionBiosource::SetFeat(), IEditingActionFeat::SetFeat(), IEditingActionFeat::SetFeatForAnotherFeat(), CFlatFileContext::SetFeatTree(), CUser_object::SetFieldRef(), CUser_field::SetFieldRef(), CBlastTabularInfo::SetFields(), CAlignFilter::SetFilter(), CFileAutoLoader::SetFormatManager(), CFlatItemOStream::SetFormatter(), CDockContainer::SetFullTree(), CNcbiApplicationAPI::SetFullVersion(), CFastaIdHandler::SetGenerator(), CSearchDatabase::SetGiList(), CFontWindow::SetGlFont(), CAnnotMapping_Info::SetGraphRanges(), CAnnotMapping_Info::SetIdRangeMap(), CPluginLibInfo_Base::SetInfo(), CWorkspaceFolder_Base::SetInfo(), CBlast4_get_search_info_reply_Base::SetInfo(), CBlast4_get_search_info_request_Base::SetInfo(), CProjectFolder_Base::SetInfo(), CID2S_Bioseqs_Info_Base::SetInfo(), CFeaturePanel::SetInputObject(), CSeqGraphicRenderer::SetInputObject(), CBlastPrelimSearch::SetInterruptCallback(), CRawBedRecord::SetInterval(), CProjectViewBase::SetLabelGenerator(), CLayoutGroup::SetLayoutPolicy(), CPriorityNode::SetLeaf(), CDataSource::SetLoaded(), CGffFeatureRecord::SetLocation(), CDesktopCanvas::SetMainItem(), CAnnotMapping_Info::SetMappedConverstion(), CAnnotMapping_Info::SetMappedSeq_align(), CAnnotMapping_Info::SetMappedSeq_align_Cvts(), CAnnotMapping_Info::SetMappedSeq_feat(), CAnnotMapping_Info::SetMappedSeq_id(), CAnnotMapping_Info::SetMappedSeq_loc(), CSeqTableReader::SetMapper(), CBuildDatabase::SetMaskDataSource(), CBioseqContext::SetMaster(), SetMinimumPub(), CProjectItem::SetModifiedDate(), CTempTrackProxy::SetNAdata(), CBlastDbSet::SetNegativeGiList(), CSearchDatabase::SetNegativeGiList(), CObjectListTableModel::SetObjectList(), CObjectListWidgetSel::SetObjects(), CObjectListTableModel::SetObjects(), CNGAlignPanel::SetObjects(), CUpdateMultipleSeq_Input::SetOldEntryAndScope(), CPageHandler::SetOptions(), CRemotePssmSearch::SetOptions(), CBuildOptionsDlg::SetParams(), CAdvancedAlignCleanup::SetParams(), CTableViewWithTextViewNav::SetParams(), CBlastDbSet::SetPositiveGiList(), CPsiBlastImpl::SetPssm(), CPublicationTypePanel::SetPub(), CRelaxedLookupDlg::SetPubdesc(), CMultiAligner::SetQueries(), CRemoteBlast::SetQueries(), CRemoteSeqSearch::SetQueryFactory(), CLayoutFeatLabel::SetRange(), CPhrap_Sequence::SetRead(), CBamRefSequencesPanel::SetReferenceSeqIds(), CVcfRefSequencesPanel::SetReferenceSeqIds(), variation_ref::CVariationUtil::SetReferenceSequence(), CCluster::SetRefSeq(), CRegistryFile::SetRegistry(), CRPCClientException::SetRetryContext(), CMActionTree::SetRoot(), IPhyloTreeRender::SetScheme(), CPhyloTreeWidget::SetScheme(), CTreeCollisionModel2D::SetScheme(), CTreeBoundaryNode::SetScheme(), CTreeGraphicsModel::SetScheme(), CPhyloTreeLabel::SetScheme(), CValidError_imp::SetScope(), CSAM_Formatter::SetScope(), CNewCleanup_imp::SetScope(), CGBProject::SetScope(), CGBProjectHandle::SetScope(), CCleanup::SetScope(), CScoreLookup::SetScope(), CAdjustForConsensusSpliceSite::SetScope(), CSelectionVisitor::SetScope(), CMacroStringConstraintPanel::SetSearchFunc(), CDesktopCanvas::SetSelectedObjects(), CTSE_Info::SetSeq_entry(), CSearchDatabase::SetSeqDb(), CRenderingContext::SetSeqDS(), CBlastDBExtractor::SetSeqId(), CPhyloNodeData::SetSeqID(), CSGAlignmentJob::SetSortBy(), CSGFeatureJob::SetSortBy(), CGlRenderNode::SetState(), CProjectItemExtra::SetStr(), CGridWidget::SetTableSelection(), CBuildDatabase::SetTaxids(), CNamedGroup::SetTitleFont(), CTempTrackProxy::SetTrack(), CTrackConfigManager::SetTrackConfig(), CVariation_ref::SetTranslocation(), CTreeQueryExec::SetTree(), CPriorityNode::SetTree(), CTextPanel::SetUndoManager(), CValidError_imp::Setup(), CSplitCacheApp::SetupCache(), LinkHspTestFixture::setupCutoffScores(), CAssemblyTrackingPanel::SetUser_object(), CAuthorizedAccessPanel::SetUser_object(), CRefGeneTrackingPanel::SetUser_object(), CUnreviewedPanel::SetUser_object(), CUnverifiedPanel::SetUser_object(), impl::CConnection::SetUserData(), CProjectItem::SetUserObject(), CMiscSeqTableColumn::SetValCmd(), CGlVboNode::SetVBOGeom(), CAlignedFeatureGraph::SFeatRec::SFeatRec(), CTableXformPanel::Show(), CProjectService::ShowView(), CProjectService::ShutDownService(), CSerial_FilterObjectsHook< TObject >::SkipObject(), SMacroFuncWithArgs::SMacroFuncWithArgs(), SModelData::SModelData(), CSeqDB_FilterTree::Specialize(), CQuerySplitter::Split(), SplitLocationForGap(), fix_pub::SplitMedlineEntry(), SplitQuery_CreateChunkData(), SpPrepareEntry(), SrchGene(), CBDB_Cache::StartPurgeThread(), NDirectNetStorageImpl::CFileTrack::StartRead(), CGBSeqFormatter::StartSection(), CTextSelHandler::STGH_GetSelectedFeatureSubtypes(), CFeatureGenerator::SImplementation::StitchSmallHoles(), CBDB_Env::StopBackgroundWriterThread(), CQueueDataBase::StopExecutionWatcherThread(), CPhyloForce::StopLayout(), CQueueDataBase::StopNotifThread(), CBDB_Cache::StopPurgeThread(), CQueueDataBase::StopPurgeThread(), CQueueDataBase::StopServiceThread(), CNetStorageServer::StopServiceThread(), CDiscrepancyContext::StringObjRef(), CAliToSeq_align::StringToSeq_id(), CDiscrepancyVisitorImpl< _Name >::Summarize(), CGlTexture::Swallow(), CHitFilter< THit >::sx_Cleave(), CHitFilter< THit >::sx_Merge(), CCompartmentFinder< THit >::sx_XFilter(), CSequenceEditingEventHandler::TableReaderClipboard(), CEditingBtnsPanel::TableReaderFromClipboard(), CSplitCacheApp::TestSplit(), CMacroFunction_SetRelFeatQual::TheFunction(), CMacroFunction_EditRelFeatQual::TheFunction(), CMacroFunction_ConvertFeatQual::TheFunction(), CMacroFunction_ConvertRNARelQual::TheFunction(), CMacroFunction_ParseFeatQual::TheFunction(), CMacroFunction_ParseRNARelQual::TheFunction(), CMacroFunction_AddParsedToFeatQual::TheFunction(), CMacroFunction_ParsedTextFrom::TheFunction(), CMacroFunction_CopyFeatQual::TheFunction(), CMacroFunction_CopyRNARelQual::TheFunction(), CMacroFunction_RmvOutsideRelFeatQual::TheFunction(), CMacroFunction_RemoveAllFeatures::TheFunction(), CAlnVecRow::THH_GetLayoutTrack(), CSeqGraphicPane::THH_GetLayoutTrack(), IBISInteraction::ToAlignAnnot(), CBLASTParams::ToArgs(), CBLASTParams::ToArgVecBlastOptions(), CBLASTParams::ToBlastOptions(), CDockContainerDescr::ToUserObject(), CAuthorAffiliationPanel::TransferDataFromWindow(), CSingleAssemblyTrackingPanel::TransferDataFromWindow(), CSubmitterNamePanel::TransferDataFromWindow(), CSubAnnotationPanel::TransferDataToWindow(), CSubPrep_panel::TransferDataToWindow(), CLocationPanel::TransferDataToWindow(), CSerialTitleValidator::TransferFromWindow(), CFeatureGenerator::SImplementation::TransformProteinAlignToTranscript(), TranslateCDSCommand(), CAlignmentAssistant::TranslateLocations(), variation::CVariationUtil::TranslateNAtoAA(), CSearchResults::TrimSeqAlign(), TruncateSeqLoc(), CPSGL_Blob_Processor::TSE_ToOM(), TSeqLocVector2Bioseqs(), TSeqLocVector2Packed_seqint(), CCmdDelSeq_feat::Unexecute(), CCmdDynamic::Unexecute(), CMacroEditor::Update(), CDUpdater::update(), CSeqGraphicPane::UpdateConfig(), CBamUtils::UpdateCoverageGraphInfo(), CMacroLabel::UpdateMacro(), CMacroLabel::UpdateMacroRep(), CAnnotMapping_Info::UpdateMappedSeq_loc(), CUpdateSeqPanel::UpdatePanel(), CAbstractProjectItem::UserOp_Assign(), USING_SCOPE(), CValidator::Validate(), CValidError_imp::Validate(), CValidError_bioseq::ValidateIDSetAgainstDb(), CAsnvalThreadState::ValidateInput(), CDBConnectionFactory::WorkWithSingleServer(), CThread::Wrapper(), CBlastDB_FastaFormatter::Write(), CWriteDB_ColumnIndex::WriteBlobIndex(), CIdMapperGCAssembly::x_AddAliasMappings(), CAlnTableDS::x_AddAlign(), CAlignmentTrack::x_AddAlignFeat_Recursive(), CAlignmentTrack::x_AddAlignFeatLayout(), CSeq_annot_Info::x_AddAlignIndex(), CAlignmentTrack::x_AddAlignStatLayout(), CPhrap_Contig::x_AddBaseSegFeats(), CSequenceUpdater::x_AddCitSubToUpdatedSequence(), CDockContainer::x_AddClientInSplitter(), CEpigenomicsTrack::x_AddGraphs(), CAnnot_Collector::x_AddObjectMapping(), CPhrap_Read::x_AddQualityFeat(), CSourceFeatureItem::x_AddQuals(), CPhrapReader::x_AddRead(), CPhrap_Contig::x_AddReadLocFeats(), CPhrap_Read::x_AddTagFeats(), CPhrap_Contig::x_AddTagFeats(), CMSAToolJob::x_AddTreeProjectItem(), CSeq_loc_Mapper_Base::x_AdjustSeqTypesToProt(), CIgBlast::x_AnnotateDomain(), x_ApplyCmd(), CSourceModParser::x_ApplyGenomeProjectsDBMods(), variation::CHgvsParser::x_AsHgvsExpression(), CAlnVecMultiDataSource::x_Assign(), CBioseq_Info::x_AttachMap(), CScope_Impl::x_AttachToOM(), CProjectViewBase::x_AttachToProject(), CPhyloPdfGrabber::x_BeginCaptures(), CPdfGrabber::x_BeginCaptures(), CLDS2_Database::x_BlobToSeq_id(), CSparseAln::x_Build(), CMakeBlastDBApp::x_BuildDatabase(), CMakeClusterDBApp::x_BuildDatabase(), CWriteDB_Impl::x_BuildDeflinesFromBioseq(), CMacroFunction_StringConstraints::x_BuildNoCaseStringConstraint(), CBlastFormatterApp::x_BuildQueryFromPssm(), CBlastFormatterVdbApp::x_BuildQueryFromPssm(), CMagicBlast::x_BuildResultSet(), CMagicBlast::x_BuildSeqAlignSet(), CBlastPrelimSearch::x_BuildStdSegList(), variation::CVariationUtil::CCdregionIndex::x_CacheSeqData(), CFileLoadManager::x_CheckFormatConflict(), CElementaryMatching::x_Cleanup(), CCleanupHugeAsnReader::x_CleanupTopLevelDescriptors(), CAlnMultiDSBuilder::x_Clear(), CAlnSpanVertModel::x_Clear(), CHitMatrixDataSource::x_Clear(), CHitMatrixDSBuilder::x_Clear(), CObjectListTableModel::x_Clear(), CRemoveGeneralId::x_CollectChangedIds(), CFlatGatherer::x_CollectSourceDescriptors(), CCompareSeq_locs::x_Compare(), CSeqDBOIDList::x_ComputeFilters(), CFeaturePanel::x_ConfigureSubtracks(), CGBankLoadingJob::x_Convert(), CPhrapReader::x_ConvertContig(), CAuthor::x_ConvertMlToStandard(), CIgBlast::x_ConvertResultType(), CQualTableLoadManager::x_ConvertToSeqAnnot(), CTableImportWizard::x_ConvertToSeqAnnot(), CBlastDbBlob::x_Copy(), CIgBlastnApp::x_CountUserBatches(), CAssemblyInfo::x_CreateAssmInfo(), CBlastInputReader::x_CreateBioseq(), CNgAlignApp::x_CreateBlastAligner(), CFeatureGenerator::SImplementation::x_CreateCdsFeature(), CSGFeatureJob::x_CreateCloneFeature(), CNetScheduleHandler::x_CreateConnContext(), CNetStorageHandler::x_CreateConnContext(), CBamLoadingJob::x_CreateDataLoader(), CPhrap_Read::x_CreateDesc(), CPhrapReader::x_CreateDesc(), CProjectService::x_CreateDocuments(), CTextPanel::x_CreateEditor(), CSeqDesktopPanel::x_CreateEditor(), CSGAlignmentJob::x_CreateFeatGlyph(), CSGFeatureJob::x_CreateFeature2(), CFeatureGenerator::SImplementation::x_CreateGeneFeature(), CGeneModelFeatJob::x_CreateGeneModels(), CSGAlignmentJob::x_CreateGeneModels(), CRenderingContext::x_CreateGlyphs(), CFeatureLoadingJob::x_CreateGraph(), CPageHandler::x_CreateHeaderFooter(), CElementaryMatching::x_CreateIndex(), CBLAST_DB_Dialog::x_CreateItems(), CNetBLAST_DMSearchTool::x_CreateJob(), CSNPSearchTool::x_CreateJob(), CComponentSearchTool::x_CreateJob(), CCpgSearchTool::x_CreateJob(), CEntrezSearchTool::x_CreateJob(), CFeatureSearchTool::x_CreateJob(), COrfSearchTool::x_CreateJob(), CSequenceSearchTool::x_CreateJob(), CVcfSearchTool::x_CreateJob(), CFeatureGenerator::SImplementation::x_CreateMrnaBioseq(), CFeatureGenerator::SImplementation::x_CreateMrnaFeature(), CBlastnVdbAppArgs::x_CreateOptionsHandle(), CBlastAppArgs::x_CreateOptionsHandleWithTask(), CGBankLoadingJob::x_CreateProjectItems(), CCleanupAlignmentsJob::x_CreateProjectItems(), CGroupAlignmentsJob::x_CreateProjectItems(), CMergeAlignmentsJob::x_CreateProjectItems(), CMSAToolJob::x_CreateProjectItems(), CCreateNeedlemanWunschJob::x_CreateProjectItems(), CFindOverlapJob::x_CreateProjectItems(), CSplignJob::x_CreateProjectItems(), CWindowMaskerJob::x_CreateProjectItems(), CSrcEditJob::x_CreateProjectItems(), CNetBlastLoadingJob::x_CreateProjectItemsFromBlastResult(), CNgAlignApp::x_CreateRemoteBlastAligner(), CNetBlastJobDescriptor::x_CreateRemoteBlastIfNeeded(), CTextRetrieveJob::x_CreateResult(), CMagicBlast::x_CreateSeqAlignSet(), CNgAlignApp::x_CreateSequenceSet(), CAlnMultiDSBuilder::x_CreateSparseDataSource(), CTableView::x_CreateTableData(), CAlnVecRow::x_CreateTrackPanel(), CPhyTreeCalc::x_CreateValidAlign(), CNCBlobVerManager::x_DeleteCurVersion(), CAlnVecMultiDataSource::x_DeleteJob(), CSparseMultiDataSource::x_DeleteJob(), CScoreCache::x_DeleteJob(), CBioseqEditor::x_DeleteObject(), CQuery::CField::x_Detach(), CScope_Impl::x_DetachFromOM(), CProjectViewBase::x_DetachFromProject(), CBlastOptionsRemote::x_DoDeepCopy(), CMacroFunction_SwapRelFeatQual::x_DoDestFeatFieldsExist(), CFlatGatherer::x_DoMultipleSections(), CAdjustFeaturesForGaps::x_DoOne(), COpenDlg::x_DoTransition(), CRunToolDlg::x_DoTransition(), CFeatGlyph::x_DrawProjectedRuler(), CFeatGlyph::x_DrawRuler(), CAsnSubCacheCreateApplication::x_EliminateIdsAlreadyInCache(), CSnpJob::x_Execute(), CSGAlignmentJob::x_Execute(), CSGAlignScoringJob::x_Execute(), CSGAlignStatJob::x_Execute(), CSGSeqGraphJob::x_Execute(), CBinsJob::x_Execute(), CHapmapJob::x_Execute(), CLDBlockJob::x_Execute(), CEpigenomicsJob::x_Execute(), CSGFeatureJob::x_Execute(), CGeneModelFeatJob::x_Execute(), CBatchFeatJob::x_Execute(), CSGCalcFeatHistJob::x_Execute(), CSGSegmentMapJob::x_Execute(), CSGSegmentsSeqIDJob::x_Execute(), CSGSwitchPointJob::x_Execute(), CSFTranslationJob::x_Execute(), CVcfFeatureJob::x_Execute(), variation_ref::CHgvsParser::x_expr2(), variation::CHgvsParser::x_expr2(), variation_ref::CHgvsParser::x_expr3(), variation::CHgvsParser::x_expr3(), CFeaturePropagator::x_ExtendToStopCodon(), CBlastFormatterApp::x_ExtractQueries(), CBlastFormatterVdbApp::x_ExtractQueries(), CPsiBlastInputClustalW::x_ExtractQueryForPssm(), CPsiBlastInputData::x_ExtractQueryForPssm(), CCddInputData::x_ExtractQueryForPssm(), CPsiBlastImpl::x_ExtractQueryFromPssm(), CObjectListWidgetSel::x_FilterDuplicates(), CIgBlast::x_FindDJ(), CDeltaBlast::x_FindDomainHits(), CUpdateAlign::x_FindNotPresentIDs(), CMultiAligner::x_FindQueryClusters(), CAgpToSeqEntry::x_FinishedBioseq(), CSpaceShrinker::x_FinishMoveRecord(), CSpaceShrinker::x_FinishMoves(), CGencollIdMapper::x_FixImperfectId(), CWriteDB_ColumnIndex::x_Flush(), CCIGAR_Formatter::x_FormatDensegRows(), variation_ref::CHgvsParser::x_fuzzy_pos(), variation::CHgvsParser::x_fuzzy_pos(), CFlatGatherer::x_GatherBioseq(), CFlatGatherer::x_GatherSeqEntry(), variation_ref::CHgvsParser::x_general_pos(), variation::CHgvsParser::x_general_pos(), IPhyloTreeRender::x_GenerateTexture(), CSGAlignmentJob::x_GetAlignments(), CSGAlignmentJob::x_GetAlignSmear(), CPdf::x_GetAlphaGraphicsState(), CSeqTable_sparse_index::x_GetBitSetCache(), CRemoteBlast::x_GetBlast4SearchRequestBody(), CTaxTreeTestDlg::x_GetClient(), CCreateGeneModelTask::x_GetCommand(), CGlCgiImageApplication::x_GetContext(), CSGAlignmentJob::x_GetCoverageGraph(), CEUtilsApp::x_GetCtx(), CBioseqEditor::x_GetDeleteCommand(), CWriteDB_Impl::x_GetFastaReaderDeflines(), CDisplaySeqalign::x_GetFeatureInfo(), CTableViewWithTextViewNav::x_GetFlatFileCtrl(), CDeflineGenerator::x_GetGeneRefViaCDS(), CAlignmentTrack::x_GetGraphParams(), CSeqDBVol::x_GetHdrAsn1(), CObjectListWidgetSel::x_GetObjectList(), CSeqDBImpl::x_GetOidList(), CSeq_align_Mapper_Base::x_GetPartialDenseg(), CPromote::x_GetProductId(), CGuiObjectInfoSeq_feat::x_GetProductSequence(), CRemoveName::x_GetReplacementIds(), CAccessionToLocalId::x_GetReplacementIds(), CRemoteBlast::x_GetRequestInfoFromFile(), CRemoteBlast::x_GetRequestInfoFromRID(), CBuildDatabase::x_GetScope(), CGapStatsApplication::x_GetScope(), CBlastHitMatrixCGIApplication::x_GetSeqAnnot(), CEditObjectSeq_feat::x_GetSeqFeatCopy(), CCompartApp::x_GetSeqLength(), CAlnVec::x_GetSeqVector(), IEditingActionFeat::x_GetSublocOnBioseq(), CSeqDBVol::x_GetTaxDefline(), CCommonComponentScorer::x_GetUserCompList(), CFastaExportJob::x_GetWholeLoc(), CFeatureGenerator::SImplementation::x_HandleCdsExceptions(), CEditObjectSeq_feat::x_HandleCdsProduct(), CThreadInPool< TRequest >::x_HandleOneRequest(), variation::CVariationUtil::x_InferNAfromAA(), CRemoteBlast::x_Init(), CAlnSpanVertModel::x_Init(), CWGSGiIterator::x_Init(), CSequenceDataTester::x_Init(), CBlastRPSInfo::x_Init(), CAlignDataSource::x_Init(), CNcbiRegistry::x_Init(), CSeqMasterIndex::x_Init(), CGencollIdMapper::x_Init_SeqLocMappers(), CPhyTreeCalc::x_InitAlignDS(), CBlastDBCmdApp::x_InitBlastDB(), CBlastDBCmdApp::x_InitBlastDB_TaxIdList(), CBl2Seq::x_InitCLocalBlast(), CHttpRequest::x_InitConnection(), CHttpRequest::x_InitConnection2(), CMixedStrands::x_InitDialog(), CSeq_annot_Info::x_InitFeatKeys(), CSeq_annot_Info::x_InitFeatTableKeys(), CElementaryMatching::x_InitFilteringVector(), CFeatureTrack::x_InitGlyphs_Recursive(), CBlastHitMatrix::x_InitGraphics(), CSeq_annot_Info::x_InitGraphKeys(), CGraphTrack::x_InitGrid(), CGridWidget::x_InitGrid(), CSeqMasterIndex::x_Initialize(), CSearchDatabase::x_InitializeDb(), CSubmissionWizard::x_InitializeSubmitBlock(), CFeatureTableReader_Imp::x_InitId(), CSeq_annot_Info::x_InitLocsKeys(), CBlastSearchTask::x_InitMonitoringStage(), CBlastHitMatrix::x_InitObjectManager(), CMakeProfileDBApp::x_InitOutputDb(), CMakeProfileDBApp::x_InitProgramParameters(), CPdfGrabber::x_InitRenderer(), CSVGGrabber::x_InitRenderer(), CDeltaBlastTestFixture::x_InitScope(), CMultiAlignerFixture::x_InitScope(), CAlnPrinterFixture::x_InitScope(), CPsiBl2Seq::x_InitSubject(), variation_ref::CHgvsParser::x_InstToString(), variation_ref::CHgvsParser::x_int_fuzz(), variation::CHgvsParser::x_int_fuzz(), CSubPrepIntroPanel::x_LaunchSubmitEditor(), CPhyloForce::x_Layout(), CMetaRegistry::x_Load(), CSGAlignmentJob::x_LoadAlignments(), CAlignmentTrack::x_LoadAlignmentSettings(), CTSE_Split_Info::x_LoadAnnot(), CNgAlignApp::x_LoadAssembly(), CSplitDataLoader::x_LoadData(), CBatchFeatJob::x_LoadFeatProducts(), CSeqGraphicConfig::x_LoadFeatSettings(), CSeqTextJob::x_LoadFeatureTypes(), CSGSegmentSmearJob::x_LoadFromDeltaSeqs(), CSGSegmentSmearJob::x_LoadFromNA(), CSGSegmentSmearJob::x_LoadFromNetCache(), CLDBlockJob::x_LoadFtable(), CSGSeqGraphJob::x_LoadGraph(), CSGSeqGraphJob::x_LoadGraphFromCoverageGraph(), CAlignmentTrack::x_LoadMatePairSettings(), CSGSeqGraphJob::x_LoadSeqTable(), CColumnarVCFReaderApp::x_LoadSerializedData(), CGraphOverlay::x_LoadSettings(), CGraphTrack::x_LoadSettings(), CSegmentMapTrack::x_LoadSettings(), CSequenceTrack::x_LoadSettings(), CAlignmentTrack::x_LoadSettings(), CGeneModelTrack::x_LoadSettings(), CSixFramesTransTrack::x_LoadSettings(), CAgpconvertApplication::x_LoadTemplate(), CLDS2_DataLoader::x_LoadTSE(), CProjectService::x_LoadWorkspace(), variation_ref::CHgvsParser::x_location(), CDBConnectionFactory::x_LogConnection(), CAutodefJob::x_MakeChanges(), CObjMgr_QueryFactory::x_MakeLocalQueryData(), CObjMgrFree_QueryFactory::x_MakeLocalQueryData(), CSequenceUpdater::x_MakeNewEntry(), CObjMgr_QueryFactory::x_MakeRemoteQueryData(), CObjMgrFree_QueryFactory::x_MakeRemoteQueryData(), CMappingRange::x_Map_Fuzz(), CSeq_annot_Info::x_MapAnnotObject(), CFeatureGenerator::SImplementation::x_MapFeature(), CFeaturePropagator::x_MapLocation(), CFeatureGenerator::SImplementation::SMapper::x_Mapper(), CSeq_loc_Mapper_Base::x_MapSeq_align(), CSeq_loc_Mapper_Base::x_MapSeq_loc(), CSGSegmentMapJob::x_MergeSeqSegments(), CNewCleanup_imp::x_MoveNpSrc(), CBlastSearchTask::x_NextSubTask(), CSeqTableGridPanel::x_OnCopyCells(), CSearchToolBase::x_OnJobCanceled(), CScoreCache::x_OnJobCanceled(), CSnpTrack::x_OnJobCompleted(), CSearchToolBase::x_OnJobCompleted(), CScoreCache::x_OnJobCompleted(), CSearchToolBase::x_OnJobFailed(), CScoreCache::x_OnJobFailed(), CSUCRefreshCntrl::CSUCRefreshCntrlHelper::x_OnJobNotification(), CSeqTableGridPanel::x_OnPasteCells(), CGraphTrack::x_OnSettingsIconClicked(), CVcfLoadingJob::x_OnVCFVariantListReady(), CSeqDBVol::x_OpenAllColumns(), CSeqDBVol::x_OpenGiFile(), CSeqDBVol::x_OpenHdrFile(), CSeqDBVol::x_OpenSeqFile(), CSeq_loc_Mapper_Base::x_OptimizeSeq_loc(), CGC_Assembly_Parser::x_ParseGCSequence(), CDataLoaderPatcher::x_PatchLock(), CGFFReader::x_PlaceFeature(), variation::CHgvsParser::x_PlacementCoordsToStr(), CFeatTableView::x_PreAttachToProject(), CBinsJob::x_PreFetchFtable(), CLocalVDBBlast::x_PreparePssm(), CSearchJobBase::x_PrepareSearch(), CAlnMultiCGIApplication::x_PreProcess(), CNetScheduleHandler::x_PrintCmdRequestStop(), CNetStorageHandler::x_PrintMessageRequestStart(), CNetStorageHandler::x_PrintMessageRequestStop(), CPSGS_WGSProcessor::x_ProcessBlobBySeqIdRequest(), CIgBlast::x_ProcessCResult(), CMacroApplySrcTablePanel::x_ProcessFirstLine(), CCleanupApp::x_ProcessHugeFileBlob(), CMakeClusterDBApp::x_ProcessInputData(), CMakeClusterDBApp::x_ProcessInputFile(), CGeneModelFeatJob::x_ProcessLandMarkFeatures(), CXcompareAnnotsApplication::x_ProcessMappingRange(), CXcompareAnnotsApplication::x_ProcessMappingRanges(), CMakeBlastDBApp::x_ProcessMaskData(), CNetScheduleHandler::x_ProcessMsgRequest(), CCleanupApp::x_ProcessOneFile(), CId2ReaderBase::x_ProcessPacket(), CNetScheduleHandler::x_ProcessQueueInfo(), CPSGS_WGSProcessor::x_ProcessResolveRequest(), CBlastVdbCmdApp::x_ProcessSearchRequest(), CXcompareAnnotsApplication::x_ProcessSeqAlignSetFromFile(), CNetScheduleHandler::x_ProcessSetQueue(), CCleanupApp::x_ProcessTraditionally(), CPromote::x_PromoteRna(), variation_ref::CVariationUtil::x_ProtToPrecursor(), CWriteDB_Impl::x_Publish(), CSeq_align_Mapper_Base::x_PushExonPart(), CSeq_loc_Mapper_Base::x_PushLocToDstMix(), CSeq_loc_Mapper_Base::x_PushSourceRange(), variation_ref::CHgvsParser::x_range(), CAppNWA::x_ReadFastaFile(), CSplignApp::x_ReadFastaSetId(), CGapStatsApplication::x_ReadFileOrAccn(), CPhrapReader::x_ReadOldFormatData(), CPhrapReader::x_ReadRead(), CMultiAlignerFixture::x_ReadRpsArchive(), CDeltaBlastTestFixture::x_ReadSeqEntriesFromFile(), CPsiBl2SeqTestFixture::x_ReadSeqEntriesFromFile(), CPsiBlastTestFixture::x_ReadSeqEntriesFromFile(), CMacroFunction_StringFastConstraints::x_ReadSynonymsFor(), CMacroFunction_StringSlowConstraints::x_ReadSynonymsFor(), CFeatureTblFr::x_RefreshTable(), CFeatureTrack::x_RegroupFeats(), CDataSource::x_ReleaseLastLoadLock(), CNCBlobVerManager::x_ReleaseMgr(), variation::CVariationUtil::x_Remap(), CRemoteSeqSearch::x_RemoteBlast(), CRemotePssmSearch::x_RemoteBlast(), CSequenceUpdater::x_RemoveNewIDInFeature(), CSeqGraphicPane::x_Render(), CBlastHitMatrix::x_RenderImage(), CTextSelHandler::x_RenderSelectedFeatures(), CTable2AsnValidator::x_ReportDiscrepancies(), CCDDClientPool::x_RequestBlobData(), CNewCleanup_imp::x_RescueMolInfo(), CTSE_Info::x_Reset(), CGFFReader::x_Reset(), CSeqTable_multi_data::x_ResetCache(), CSeqTable_sparse_index::x_ResetCache(), CFeatureTableReader_Imp::x_ResetFeat(), CHugeAsnReader::x_ResetIndex(), CBl2Seq::x_ResetInternalDs(), CDesktopCanvas::x_ResetSelected(), CBioseq_Info::x_ResetSeqMap(), CNetBlastSubmittingJob::x_ResetState(), CNetBlastMonitoringJob::x_ResetState(), CEditAppJob::x_ResetState(), CAppJob::x_ResetState(), CAlnVecRow::x_ResetTrackPanel(), CGFFReader::x_ResolveID(), CBuildDatabase::x_ResolveRemoteId(), CTSE_ScopeInfo::x_RestoreAdded(), CFlatFeatureRetrieveJob::x_Run(), CFlatFileSequenceListJob::x_Run(), CMagicBlast::x_Run(), CPsiBlastApp::x_RunLocalPsiBlastIterations(), CDBLBClientApp::x_RunLookup(), CRPSBlastApp::x_RunMTBySplitDB(), CRPSTBlastnApp::x_RunMTBySplitDB(), CTblastnApp::x_RunMTBySplitDB(), CRPSBlastApp::x_RunMTBySplitQuery(), CRPSTBlastnApp::x_RunMTBySplitQuery(), CMergeTree::x_Search_Iter(), CMergeTree::x_Search_Recur(), CBlastKmer::x_SearchMultipleQueries(), CSeq_entry_Info::x_Select(), CPSGS_CDDProcessor::x_SendAnnotInfo(), CNewCleanup_imp::x_SeqFeatCDSGBQualBC(), variation_ref::CHgvsParser::x_SeqPntToStr(), CScopeTransaction::x_Set(), CIgBlast::x_SetAnnotation(), CRemoteBlast::x_SetDatabase(), CBioseqContext::x_SetId(), CDataSource::x_SetLoadLock(), CBioseqContext::x_SetLocation(), CMacroFunction_ApplyFeature::x_SetLocation(), CCDSTranslationPanel::x_SetLocationForProtein(), CBioseqContext::x_SetMapper(), CReportEntry::x_SetMrnaMapper(), CSeq_align::x_SetNamedScore(), CViewGraphic::x_SetNonAsnInput(), CBioseq_Info::x_SetObject(), CBioseq_set_Info::x_SetObject(), CSeq_annot_Info::x_SetObject(), CSeq_entry_Info::x_SetObject(), CSplign::x_SetPattern(), CCDSTranslationPanel::x_SetProtein(), CGuiRegistry::x_SetRegistry(), CSeq_annot_Info::x_SetSNP_annot_Info(), CRemoteBlast::x_SetSubjectSequences(), CSeqDBOIDList::x_Setup(), CApplyRNAITSDlg::x_SetupAlnMgr(), CIgBlast::x_SetupCRegionSearch(), CIgBlast::x_SetupDbSearch(), CIgBlast::x_SetupDJSearch(), CIgBlast::x_SetupNoOverlapDSearch(), CPsiBl2SeqTestFixture::x_SetupSubject(), CIgBlast::x_SetupVSearch(), CUnorderedSplitter::x_SplitDeltaExt(), CLayoutTrackHandler::x_StartMoving(), CSeqTextPanel::x_StartSearch(), CLayoutTrackHandler::x_StopMoving(), CThreadPool_ThreadImpl::x_TaskFinished(), CSeqTest::x_TestAllCdregions(), CTracebackSearchTestFixture::x_Traceback(), CSearchJobBase::x_TransferResults(), CCDSTranslationPanel::x_Translate(), CFeaturePropagator::x_TruncateToStopCodon(), CSeqDBVol::x_UnleaseGiFile(), CSeqDBVol::x_UnleasePigFile(), CSeqDBVol::x_UnleaseStrFile(), CSeqDBVol::x_UnleaseTiFile(), CGraphOverlay::x_UpdateBoundingBox(), CSnpTrack::x_UpdateData(), CCreateGeneModelTask::x_UpdateGeneOnSequence(), CHistogramGlyph::x_UpdateLegend(), CIdentifiersPanel::x_UpdateXrefDescriptions(), CFeatureSearchJob::x_ValidateParams(), CComponentSearchJob::x_ValidateParams(), CCpgSearchJob::x_ValidateParams(), COrfSearchJob::x_ValidateParams(), CSequenceSearchJob::x_ValidateParams(), CVcfSearchJob::x_ValidateParams(), CBedReader::xAppendFeatureBlock(), CBedReader::xAppendFeatureCds(), CBedReader::xAppendFeatureChrom(), CBedReader::xAppendFeatureGene(), CBedReader::xAppendFeatureRna(), CBedReader::xAppendFeatureThick(), CGtfWriter::xAssignFeaturesTranscript(), CGtfAnnotAssembler::xCreateCds(), CGtfAnnotAssembler::xCreateGene(), CGtfAnnotAssembler::xCreateMrna(), XGapToSeqLocEx(), xgbint_ver(), CFeatTableEdit::xGenerate_mRNA_Product(), CGff2Writer::xGenerateMissingTranscript(), CBsDiffApp::xGetBioSource(), CGenbankIdResolve::xGetDefaultScope(), CEditObjectFeaturePropagate::xGetEditCommandAllSequences(), CEditObjectFeaturePropagate::xGetEditCommandSingleSequence(), CEmbl2Asn::xGetEntry(), CGenbank2Asn::xGetEntry(), seqsubmit_split::CSeqSubSplitter::xGetInputObject(), CSrcWriter::xInit(), CGff3ImportData::xInitializeDbxref(), CFeatTableEdit::xMakeGeneForFeature(), XMLGetDescr(), XMLRefs(), CFeatureTableReader::xParseCdregions(), CUCSCRegionReader::xParseFeature(), CBedReader::xParseFeatureUserFormat(), CGvfReader::xParseStructuredComment(), CMultiReaderApp::xProcessBed(), CMicroArrayReader::xProcessFeature(), CMultiReader::xReadASN1Text(), seqsubmit_split::CSeqSubSplitter::xTryProcessSeqEntry(), CAlnPrinterFixture::~CAlnPrinterFixture(), CBlastnNode::~CBlastnNode(), CBlastNode::~CBlastNode(), CBlastpNode::~CBlastpNode(), CBlastScopeSourceWrapper::~CBlastScopeSourceWrapper(), CBlastxNode::~CBlastxNode(), CDatabase::~CDatabase(), CDeltaBlastTestFixture::~CDeltaBlastTestFixture(), CGlVboNode::~CGlVboNode(), CMagicBlastTestFixture::~CMagicBlastTestFixture(), CMemoryChunk::~CMemoryChunk(), CMergeTree::~CMergeTree(), CMultiAlignerFixture::~CMultiAlignerFixture(), CNSTDatabase::~CNSTDatabase(), CPsiBl2SeqTestFixture::~CPsiBl2SeqTestFixture(), CPsiBlastTestFixture::~CPsiBlastTestFixture(), CQueryFactoryInfo::~CQueryFactoryInfo(), CRef< CAlnMixSegment >::~CRef(), CRPSBlastNode::~CRPSBlastNode(), CRPSTBlastnNode::~CRPSTBlastnNode(), CSeqDBLMDBEntry::~CSeqDBLMDBEntry(), CTblastnNode::~CTblastnNode(), and CVDBSeqInfoSrc::~CVDBSeqInfoSrc().
◆ Reset() [6/7]template<class C , class Locker >
Reset reference object.
This sets the pointer to object to null, and removes reference count to object and deletes the object if this is the last reference to the object.
Definition at line 1439 of file ncbiobj.hpp.
Referenced by CChangeUnindexedObjectCommand< T >::Add(), CAlnTableDS::Add(), CChangeUnindexedObjectCommand< T >::AddBioseq(), CLinkUtils::AddDbxrefLinksForSNP(), CStatusBarService::AddEventMessage(), CSelectionEvent::AddObjectSelection(), CTableAnnotDataSource::AddSeqLoc(), CWriteDB_Impl::AddSequence(), CAddCitSubForUpdate::ApplyToCSeq_entry(), CReverseAuthorNames::ApplyToPubdesc(), CSuspect_rule::ApplyToString(), CSeq_feat_Descr::Assign(), CSeq_id_Descr::Assign(), CConstRef< CSeq_loc >::AtomicReleaseTo(), CDiscrepancyVisitorImpl< _Name >::Autofix(), CBuildAlnVecJob::Build(), BuildAlignDataSource(), CMacroBioData_FeatIterBase::BuildEditedObject(), CMacroBioData_FeatIntervalIter::BuildEditedObject(), CMacroBioData_SeqAlignIter::BuildEditedObject(), CMacroBioData_SeqIter::BuildEditedObject(), CMacroBioData_SeqSetIter::BuildEditedObject(), CMacroBioData_TSEntryIter::BuildEditedObject(), CUpdateSeq_Input::CalculateAlignmentForUnitTest(), CApplyObject::CApplyObject(), CBioseqIndex::CBioseqIndex(), CDensegGraphicDataSource::CDensegGraphicDataSource(), CFastaTitleItem::CFastaTitleItem(), CFeaturePropagator::CFeaturePropagator(), CFlatFileTextItem::CFlatFileTextItem(), CGumbelParamsOptions::CGumbelParamsOptions(), CHistComment::CHistComment(), CLDBlockGlyph::CLDBlockGlyph(), CConn_IOStream::Close(), CCrossPanelIR::ColorBySegments(), Convert_Bioseq_Seq_entry(), Convert_BioTreeContainer_Seq_id(), CSeq_loc_Conversion::ConvertInterval(), CSeq_loc_Conversion::ConvertPoint(), CSeq_loc_Conversion::ConvertSimpleMix(), CUnculturedTool::CorrectBioSource(), CCulturedTool::CorrectBioSource(), CPeriodicTestJob::CPeriodicTestJob(), CPsiBlastInputData::CPsiBlastInputData(), CTableReaderMacro::CreateMacros(), CGuiObjectInfoComponent::CreateObject(), CGuiObjectInfoSeq_feat::CreateObject(), CGuiObjectInfoSeq_align::CreateObject(), CSequenceEditingEventHandler::CreateSeqSubmit(), CEditObjectSeq_desc::CreateWindow(), CReferenceItem::CReferenceItem(), CSeq_id_Handle_Wrapper::CSeq_id_Handle_Wrapper(), CSimpleGraphicDataSource::CSimpleGraphicDataSource(), CMacroBioData_PubdescIter::CSubmitblockIter::CSubmitblockIter(), CValidErrItem::CValidErrItem(), CTextPanel::DataLoaded(), CPluginReply::DecomposeRaw(), CDeltaBlastApp::DoPsiBlastIterations(), CBioseqEditor::EditSelection(), CCmdDelBioseqInst::Execute(), CCmdDelBioseq::Execute(), CCmdDelBioseqSet::Execute(), CCmdDelSeq_align::Execute(), CCmdDelSeq_graph::Execute(), CAssemblyObjectLoader::Execute(), ExtendToGapsOrEnds(), CSeq_align::FindExt(), CSeq_feat::FindExt(), variation::CVariationUtil::FindLocationProperties(), CCIGAR_Formatter::FormatByReferenceId(), CCIGAR_Formatter::FormatByReferenceRow(), CCIGAR_Formatter::FormatByTargetId(), CCIGAR_Formatter::FormatByTargetRow(), CGBSeqFormatter::FormatFeature(), CFlatGatherer::Gather(), CValidError_imp::GatherTentativeName(), CGeneFinder::GetAssociatedGeneInfo(), GetBestCdsForMrna(), GetBestMrnaForCds(), CScope_Impl::GetBioseqHandle(), CValidError_imp::GetCDSGivenProduct(), CLayoutGroup::GetChild(), CBulkEditFeatDlg::GetCommand(), IPubDescEditor::GetCommand(), CUnculTaxTool::GetCommandFromValuesTable(), CGroupMapWidget::GetCurrentItem(), CSeq_loc_Conversion::GetDstMix(), CEditObjectFeaturePropagate::GetEditCommand(), CEditObjectSeq_desc::GetEditCommand(), CSeqUtils::GetFeatLocation(), CFeatureGenePanel::GetGeneToEdit(), CAppJobDispatcher::GetJobError(), CGuiObjectInfoVariation::GetLinks(), CAnnotObject_Info::GetMaps(), CSeqGraphicPane::GetMarker(), CValidError_imp::GetmRNAGivenProduct(), GetMRNATranslationProblems(), CGC_Assembly::GetName(), CBlastDbAllBioseqSource::GetNext(), CSeqEntrySource::GetNext(), CFastaBioseqSource::GetNext(), CSeqEntryGetSource::GetNext(), CDBLinkField::GetObjects(), CSrcTableColumnBase::GetObjects(), CStructuredCommentField::GetObjects(), CFeatureSeqTableColumnBase::GetObjects(), CTableDataGCAssembly::GetObjectValue(), GetOptionsForSet(), GetOverlappingFeatures(), GetOverlappingGene(), CSeq_id_Textseq_Info::GetPackedSeqId(), CSeq_id_General_Id_Info::GetPackedSeqId(), CSeq_id_General_Str_Info::GetPackedSeqId(), CSeq_id_Gi_Info::GetPackedSeqId(), CMacroBioData_FeatIterBase::GetScopedObject(), CMacroBioData_FeatIntervalIter::GetScopedObject(), CMacroBioData_BioSourceIter::GetScopedObject(), CMacroBioData_PubdescIter::GetScopedObject(), CMacroBioData_SeqdescIter::GetScopedObject(), CMacroBioData_MolInfoIter::GetScopedObject(), CMacroBioData_UserObjectIter::GetScopedObject(), CMacroBioData_SeqAlignIter::GetScopedObject(), CMacroBioData_SeqIter::GetScopedObject(), CMacroBioData_SeqSetIter::GetScopedObject(), CMacroBioData_TSEntryIter::GetScopedObject(), CProjectTreeView::GetSelection(), CFlatFileGenerator::GetSeqFeatText(), CProjectTreeView::GetSingleObject(), CProjectItemExtra::GetStr(), CCommentItem::GetStringForTPA(), CTableDataGCAssembly::GetStringValue(), CGeneFinder::GetSuppressionCheckGeneRef(), CGC_Assembly::GetTaxId(), GetTitle(), CGuiObjectInfoComponent::GetToolTip(), CBulkCmdDlg::GetTopLevelSeqEntryAndProcessor(), CValidatePanel::GetTopSeqAndSeqSubmit(), IEditingAction::GetUpdateMRNAProductNameCmd(), CBulkCDS::GetUpdateMRNAProductNameCmd(), GetXrpForOverlap(), CAssemblyTrackingPanel::Init(), CSeqDesktopPanel::Init(), CFeatTableDS::Init(), CSparseAlignment::Init(), CSeq_align_Mapper_Base::InitExon(), CMPCrossAlignView::InitView(), CPhyTreeView::InitView(), CSeqTextView::InitView(), CViewGraphic::InitView(), CTextPanel::InitWidget(), CSeqDesktopPanel::InitWidget(), CMacroInterpreter::InterpretDoFunctions(), CGC_Assembly::IsGenBank(), CGC_Assembly::IsRefSeq(), CmRNACDSLinker::LinkSelectedFeatures(), CEditObjectSeq_desc::LocationChange(), CMappedGraph::MakeMappedGraph(), CMappedGraph::MakeMappedLoc(), CLocationConstraintMatcher::Match(), CEditObjectSeq_desc::MolInfoLocationChange(), CMacroBioData_BioSourceIter::Next(), CMacroBioData_PubdescIter::Next(), CMacroBioData_SeqdescIter::Next(), CMacroBioData_MolInfoIter::Next(), CMacroBioData_StructCommentIter::Next(), CMacroBioData_DBLinkIter::Next(), CMacroBioData_AutodefOptsIter::Next(), CDesktopViewContext::OnCopySelection(), CDesktopViewContext::OnCutSelection(), CEditingBtnsPanel::OnDataChange(), job_future_base::OnJobFailed(), CDiscrepancyPanel::OnSequester(), CAlign_CI::operator*(), CAlign_CI::operator++(), CRangeWithFuzz::operator+=(), CAlign_CI::operator--(), CAlign_CI::operator=(), CConstRef< CSeq_loc >::operator=(), operator>>(), PackedSeqLocToMaskedQueryRegions(), CFastaReader::ParseGapLine(), CVcfVariant::ParseInfoColumns(), CDiscrepancyContext::PopulateBioseq(), CDiscrepancyContext::PopulateSeqSet(), CPluginObject::PostRead(), CSequenceEditingEventHandler::PrepareSeqSubmit(), CTabularFormatter_AssemblyInfo::Print(), CBlastFormat::PrintOneResultSet(), CBlastFormat::PrintReport(), CTbl2AsnApp::ProcessHugeFile(), CHugeFileDemoApp::ProcessHugeSeqEntry(), ProductToSource(), CRelation::RelationFromUserObject(), RemoveEarlierDates(), CCleanup::RemoveUnseenTitles(), CDiscrepancyContext::ReplaceObject(), CMessageSlot::Reset(), job_future_base::reset(), CAlnChunkSegment::Reset(), CValidError_imp::Reset(), CPluginObject::Reset(), CSeq_id_Handle::Reset(), CMappedGraph::Reset(), CSeq_feat_Handle::Reset(), CSplitBlob::Reset(), CFlatFileContext::Reset(), CRangeWithFuzz::ResetFuzzFrom(), CRangeWithFuzz::ResetFuzzTo(), CSeq_loc_Conversion::ResetKeepPartial(), CRepeatMaskerReader::ResetSeqIdResolver(), CUpdateSeq_Input::ResetUpdateSequence(), SRelLoc::Resolve(), CAlign_CI::Rewind(), CLocalPssmSearch::Run(), CJobFutureJob< _Fty, void >::Run(), CPrimeNumbersJob::Run(), CPsiBlastApp::Run(), CFeatTreeSampleApp::Run(), s_CheckQuals_cdregion(), s_CitSubMatch(), s_ExtractSeqId(), variation::CVariationUtil::s_FindConsequenceForPlacement(), s_FindLatest(), s_FindLatestCitSub(), s_GetFieldAt(), s_GetModelEvidance(), s_GetOptionsForSet(), s_GetOriginalId(), s_GetProtFeatures(), s_GetQueryBioseq(), s_GetRnaMappingLocs(), s_LocationSpansMultipleSeqs(), CMacroFunction_RefreshDefline::s_RefreshDeflineCommand(), s_RunPsiVDBSearch(), CMappedGraph::Set(), CMappedFeat::Set(), CUpdateSeq_Input::SetAlignment(), CReportEntry::SetAlignment(), CProjectedMappingInfo::SetAlignmentDataSource(), CAssemblyTrackingPanel::SetBioseq(), CCulturedTool::SetBioSource(), CReportEntry::SetCds(), CAlignGlyph::SetConfig(), CLayoutGroup::SetConfig(), CLinkedFeatsGroup::SetConfig(), CHistogramGlyph::SetConfig(), CLegendItemGlyph::SetConfig(), CStructuredCommentField::SetConstraint(), CDBLinkField::SetConstraint(), CPubField::SetConstraint(), CCrossPanelIR::SetDataSource(), CTSE_ScopeInfo::SetEditTSE(), CFeatureGenerator::SImplementation::SetFeatureExceptions(), CFastaReader::SetGapLinkageEvidences(), CCleanup::SetGenePartialByLongestContainedFeature(), SAnnotSelector::SetLimitNone(), SAnnotSelector::SetLimitSeqAnnot(), SAnnotSelector::SetLimitSeqEntry(), SAnnotSelector::SetLimitTSE(), CSourceFeatureItem::SetLoc(), CFlatFileContext::SetLocation(), CGuiObjectInfoSeq_feat::SetLocation(), CDiscrepancyObject::SetMoreInfo(), CReportEntry::SetMrna(), CVcfFeatureDS::SetNonAsnDataRegistry(), CPluginObject::SetObject(), CMappedFeatOrObject::SetObject(), CValidErrItem::SetObject(), CViewGraphic::SetOrigObject(), CLinkedFeatsGroup::SetParentFeat(), CTextPanel::SetPosition(), CPluginObject::SetProject(), CEventRecordDetailsDlg::SetRecord(), CMessageSlot::SetRecord(), CReferenceItem::SetRemark(), CAlignGlyph::SetScore(), CGumbelParamsOptions::SetScoreMatrix(), CSeq_annot_SplitInfo::SetSeq_annot(), CSeq_data_SplitInfo::SetSeq_data(), CRepeatMaskerReader::SetSeqIdResolver(), CAlignModel::SetTargetId(), CSubstMatrix::SetTranslationTable(), CValidError_imp::Setup(), variation_ref::CVariationUtil::SetVariantProperties(), sGetValidateObject(), CStatusBarService::ShutDownService(), SourceToProduct(), SRelLoc::SRelLoc(), CCitSubUpdater::sx_GetCitSubForSequence(), IGuiCoreHelper::Sync(), CGuiCoreHelper::Sync(), testResultAlignments(), CIdHandler::ToCanonical(), CFeatureGenerator::SImplementation::TransformProteinAlignToTranscript(), TrimEntry(), CCmdDelBioseqSet::Unexecute(), CCmdDelSeq_align::Unexecute(), CCmdDelSeq_graph::Unexecute(), CSequenceUpdater::Update(), UpdatemRNAProduct(), CUpdateSeqPanel::UpdatePanel(), CValidError_bioseq::ValidateCDSUTR(), CValidError_desc::ValidateSeqDesc(), CAlnTableDS::x_AddAlign(), CReferenceItem::x_AddAuthors(), CGuiObjectInfoSeq_feat::x_AddExtraInfo(), CRangeWithFuzz::x_AddFuzz(), CFlatSeqLoc::x_AddID(), CReferenceItem::x_AddImprint(), CFeatureItem::x_AddQualProteinId(), CSeqMap::x_AddSegment(), variation::CHgvsParser::x_AsHgvsInstExpression(), CNewCleanup_imp::x_CleanupGenbankBlock(), CAdvancedAlignCleanup::x_CleanupProsplignCompartment(), CAlnMultiDSBuilder::x_Clear(), CFlatGatherer::x_CollectSourceFeatures(), CMaskedRangeSet::x_CombineLocs(), CSeq_id_Resolver__ChrNamesFromGC::x_Create(), CSGFeatureJob::x_CreateCrossOriginGlyphs(), CSGFeatureJob::x_CreateFeature1(), CTreeBuilderJob::x_CreateProjectItems(), CMacroFunction_SwapRelFeatQual::x_DoDestFeatFieldsExist(), CEmblGatherer::x_DoSingleSection(), CFtableGatherer::x_DoSingleSection(), CGenbankGatherer::x_DoSingleSection(), CCdsGlyph::x_DrawProtSeqWithMapping(), CFeatGlyph::x_DrawRNAProductSequence(), CTSE_Lock::x_Drop(), CNewCleanup_imp::x_ExtendSingleGeneOnMrna(), CWriteDB_Impl::x_ExtractDeflines(), variation::CHgvsParser::x_FindAssertedSequence(), CScope_Impl::x_FindBioseqInfo(), CFlatGatherer::x_FlushComments(), CCIGAR_Formatter::x_FormatDensegRows(), CCIGAR_Formatter::x_FormatLine(), CFlatGatherer::x_GatherAlignments(), CFlatGatherer::x_GatherFeatures(), CFlatGatherer::x_GatherFeaturesIdx(), CFlatGatherer::x_GatherFeaturesOnRange(), CFlatGatherer::x_GatherFeaturesOnRangeIdx(), CFlatGatherer::x_GatherFeaturesOnWholeLocation(), CFlatGatherer::x_GatherFeaturesOnWholeLocationIdx(), CAccessionItem::x_GatherInfo(), CDateItem::x_GatherInfo(), CFeatHeaderItem::x_GatherInfo(), CFlatGatherer::x_GatherReferences(), CFlatGatherer::x_GatherSequence(), CFlatGatherer::x_GatherSourceFeatures(), CFlatGatherer::x_GatherSourceOrganism(), CTaxValidationAndCleanup::x_GatherSources(), CFeatureItem::x_GetAssociatedProtInfo(), CFeatureItem::x_GetAssociatedProtInfoIdx(), CGuiObjectInfoSeq_feat::x_GetFeatLocation(), CValidatePanel::x_GetObjectsFromProjectItem(), CTableDataValidate::x_GetRowData(), CGeneFeatFromOtherFeatDlg::x_GetSelectedFeats(), CCorrectGenesDialog::x_GetSelectedPair(), CPrimaryItem::x_GetStrForPrimary(), CSeqMap::x_GetSubSeqMap(), CMultiAlignView::x_GetValidInputData(), CFeatureGenerator::SImplementation::x_HandleRnaExceptions(), variation::CVariationUtil::CCdregionIndex::x_Index(), CAnnotCompare_AlignDS::x_Init(), CBioseqContext::x_Init(), CReferenceItem::x_Init(), CSDB_Exception::x_Init(), CSeq_align_Mapper_Base::x_Init(), CSequenceDataTester::x_Init(), CBioseqIndex::x_InitDescs(), CBioseqIndex::x_InitFeats(), CSeq_loc_Mapper::x_InitGCSequence(), CSeqMasterIndex::x_Initialize(), CSeq_loc_Mapper::x_InitializeSeqMapUp(), CDenseg_CI::x_InitIterator(), CSparse_CI::x_InitIterator(), CReferenceItem::x_InitProc(), CDenseg_CI::x_InitSegment(), CSparse_CI::x_InitSegment(), CBioseqIndex::x_InitSource(), CSeq_loc_Mapper::x_IsUCSCRandomChr(), CSubmissionWizard::x_LoadProjectItemData(), CTSE_Lock::x_Lock(), variation::CHgvsParser::x_PlacementCoordsToStr(), CRNAPanel::x_PopulateTranscriptID(), CAlignSpanView::x_PreAttachToProject(), CCrossAlignView::x_PreAttachToProject(), CFeatTableView::x_PreAttachToProject(), CFlatGatherer::x_PrepareAnnotDescStrucComment(), CGapStatsApplication::x_PrintSummaryView(), CBlastFormat::x_PrintTabularReport(), CBlastFormat::x_PrintTaxReport(), CProSplignJob::x_ProcessCompartment(), CHugeFileDemoApp::x_ProcessFileTraditionally(), CXcompareAnnotsApplication::x_ProcessSeqAlignSetFromFile(), CDataSource::x_ReleaseLastLock(), CTSE_Lock::x_Relock(), CMacroInterpreter::x_Reset(), CHugeAsnReader::x_ResetIndex(), CWriteDB_Impl::x_ResetSequenceData(), CFlatFeatureRetrieveJob::x_Run(), CSeqDesktopPanel::x_SaveSelection(), CTextPanel::x_SelectFlatFileSequence(), CSeqMap::x_SetChunk(), CWriteDB_Impl::x_SetDeflinesFromBinary(), CBioseqContext::x_SetEncode(), CDeflineGenerator::x_SetFlags(), CRangeWithFuzz::x_SetFuzz(), CReportEntry::x_SetId(), CDataSource::x_SetLock(), CFlatItem::x_SetObject(), CSeqMap::x_SetObject(), CReportEntry::x_SetRnaCds(), CFlatItem::x_SetSkip(), CDeflineGenerator::x_SetTitleFromNM(), CSequenceEditingEventHandler::x_SetUpTSEandUnDoManager(), CAlignTabExportPage2::x_StartNAAlignNamesJob(), CSeq_descr_CI::x_Step(), CFlatGatherer::x_StructuredComments(), CStatusBarService::x_TerminateEventMode(), CTSE_Lock::x_Unlock(), CSingleFeatValidator::x_ValidateGeneXRef(), CFeatTableEdit::xGetLinkedFeature(), and CConstRef< CSeq_loc >::~CConstRef().
◆ Reset() [7/7]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Reset the containing pointer to null.
Definition at line 2722 of file ncbiobj.hpp.
Referenced by CAppJobEventTranslator::CAppJobEventTranslator(), CWeakRef< CQueue >::CWeakRef(), CSeqGraphicPane::OnLeftDown(), CSeqGraphicPane::OnLeftUp(), CSeqGraphicPane::OnMotion(), CWeakRef< CQueue >::operator=(), CAllOtherFeaturesTrack::SetProxy(), CAlnVecRow::x_GetAlignmentTooltip(), CAlnVecRow::x_HitTest(), CNetScheduleHandler::x_ProcessMsgQueue(), and CNetScheduleHandler::x_ProcessSetQueue().
◆ SetAllocFillMode() [1/2] void CObject::SetAllocFillMode ( const string & value ) static ◆ SetAllocFillMode() [2/2] ◆ SetChunkSize() void CObjectMemoryPool::SetChunkSize ( size_t chunk_size ) ◆ SetMallocThreshold() void CObjectMemoryPool::SetMallocThreshold ( size_t malloc_threshold ) ◆ StopMonitoring() void CObjectCounterLocker::StopMonitoring ( void ) static ◆ swap() [1/6]template<class C , class L >
void swap ( NCBI_NS_NCBI::CConstIRef< C, L > & ref1, NCBI_NS_NCBI::CConstIRef< C, L > & ref2 ) inlineDefinition at line 2892 of file ncbiobj.hpp.
◆ swap() [2/6]template<class C , class L >
void swap ( NCBI_NS_NCBI::CConstRef< C, L > & ref1, NCBI_NS_NCBI::CConstRef< C, L > & ref2 ) inlineDefinition at line 2910 of file ncbiobj.hpp.
◆ swap() [3/6]template<class C , class L >
void swap ( NCBI_NS_NCBI::CIRef< C, L > & ref1, NCBI_NS_NCBI::CIRef< C, L > & ref2 ) inlineDefinition at line 2901 of file ncbiobj.hpp.
◆ swap() [4/6]template<class C , class L >
BEGIN_STD_SCOPE void swap ( NCBI_NS_NCBI::CRef< C, L > & ref1, NCBI_NS_NCBI::CRef< C, L > & ref2 ) inline ◆ swap() [5/6]template<class C , class L >
void swap ( NCBI_NS_NCBI::CWeakIRef< C, L > & ref1, NCBI_NS_NCBI::CWeakIRef< C, L > & ref2 ) inlineDefinition at line 2928 of file ncbiobj.hpp.
◆ swap() [6/6]template<class C , class L >
void swap ( NCBI_NS_NCBI::CWeakRef< C, L > & ref1, NCBI_NS_NCBI::CWeakRef< C, L > & ref2 ) inlineDefinition at line 2919 of file ncbiobj.hpp.
◆ Swap() [1/6]template<class C , class Locker >
Swaps the pointer with another reference.
Definition at line 754 of file ncbiobj.hpp.
Referenced by CTempRefSwap< TObject >::CTempRefSwap(), CNCBlobVerManager::FinalizeWriting(), CSNPClient::GetFileInfo(), CWGSClient::GetWGSDb(), CCacheWithLock< Key, Value, Less >::CLock::operator=(), CBinaryRangeCacheWithLock< Position, Value >::CLock::operator=(), CAnnotMapping_Info::Swap(), CHeapScope::Swap(), CSeq_annot_Handle::Swap(), CSeq_entry_Handle::Swap(), CTSE_Handle::Swap(), CIRef< IAlignRow >::Swap(), CWeakRef< CQueue >::Swap(), CSNPDataLoader_Impl::x_GetFileInfo(), CWGSDataLoader_Impl::x_GetFileInfo(), and CTempRefSwap< TObject >::~CTempRefSwap().
◆ Swap() [2/6]template<class C , class Locker >
◆ Swap() [3/6]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Swaps the pointer with another reference.
Definition at line 2150 of file ncbiobj.hpp.
◆ Swap() [4/6]template<class Interface , class Locker = CInterfaceObjectLocker<Interface>>
Swaps the pointer with another reference.
Definition at line 2312 of file ncbiobj.hpp.
◆ Swap() [5/6]template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ Swap() [6/6]template<class Interface , class Locker = CWeakInterfaceLocker<Interface>>
Swap values of this reference with another.
Definition at line 2856 of file ncbiobj.hpp.
◆ ThrowNullPointerException() [1/4] void CObject::ThrowNullPointerException ( const type_info & type ) static ◆ ThrowNullPointerException() [2/4] void CObject::ThrowNullPointerException ( void ) static ◆ ThrowNullPointerException() [3/4]template<class C , class Locker >
static void CRef< C, Locker >::ThrowNullPointerException ( void ) inlinestatic ◆ ThrowNullPointerException() [4/4]template<class C , class Locker >
◆ TransferLock() [1/2] ◆ TransferLock() [2/2]template<class Interface >
Definition at line 596 of file ncbiobj.hpp.
◆ Unlock() [1/2] void CObjectCounterLocker::Unlock ( const CObject * object ) const ◆ Unlock() [2/2]template<class Interface >
Definition at line 575 of file ncbiobj.hpp.
◆ UnlockRelease() [1/2] void CObjectCounterLocker::UnlockRelease ( const CObject * object ) const ◆ UnlockRelease() [2/2]template<class Interface >
Definition at line 582 of file ncbiobj.hpp.
◆ x_AddWeakReference() ◆ x_AssignFromRef() [1/2]template<class C , class Locker >
◆ x_AssignFromRef() [2/2]template<class C , class Locker >
◆ x_InitErrCode() ◆ x_LockFromMoveConstructor() [1/2]template<class C , class Locker >
void CRef< C, Locker >::x_LockFromMoveConstructor ( const Locker & src_locker ) inlineprivate ◆ x_LockFromMoveConstructor() [2/2]template<class C , class Locker >
void CConstRef< C, Locker >::x_LockFromMoveConstructor ( const Locker & src_locker ) inlineprivate ◆ x_LockFromPtr() [1/2]template<class C , class Locker >
void CRef< C, Locker >::x_LockFromPtr ( ) inlineprivate ◆ x_LockFromPtr() [2/2]template<class C , class Locker >
◆ x_LockFromRef() [1/2]template<class C , class Locker >
void CRef< C, Locker >::x_LockFromRef ( ) inlineprivate ◆ x_LockFromRef() [2/2]template<class C , class Locker >
◆ x_MoveAssign() [1/2]template<class C , class Locker >
◆ x_MoveAssign() [2/2]template<class C , class Locker >
◆ x_UpdateCObjectPtr() CObject * CPtrToObjectProxy::x_UpdateCObjectPtr ( void ) inlineprivate ◆ ~CConstRef()template<class C , class Locker >
◆ ~CObject() CObject::~CObject ( void ) virtualDestructor.
Definition at line 750 of file ncbiobj.cpp.
References _ASSERT, count, eMagicCounterDeleted, eMagicCounterPoolDeleted, ERR_POST_X, CObject::m_Counter, CObject::ObjectStateIsAllocatedInPool(), CObject::ObjectStateReferenced(), CObject::ObjectStateUnreferenced(), CObject::ObjectStateValid(), and ObjFatal.
◆ ~CObjectEx() CObjectEx::~CObjectEx ( void ) virtualDefinition at line 1287 of file ncbiobj.cpp.
◆ ~CObjectMemoryPool() CObjectMemoryPool::~CObjectMemoryPool ( void ) ◆ ~CPtrToObjectProxy() CPtrToObjectProxy::~CPtrToObjectProxy ( void )Definition at line 1298 of file ncbiobj.cpp.
◆ ~CRef()template<class C , class Locker >
◆ ~CWeakObject() CWeakObject::~CWeakObject ( void ) virtual ◆ eCounterBitsCanBeDeleted const TCount CObject::eCounterBitsCanBeDeleted = 1 << 0 staticDefine possible object states.
When TCounter is signed, all valid values start with 01; when it is unsigned, they start with 1. In other words, when TCounter is signed, the msb (most significant bit) is 0, and the bit after that is a 1; and if the counter is unsigned, then the msb is 1.
Least significant bits are the "memory" bits and the most significant bit (or the one after it) is the "valid" bit.
The following bit positions have special significance:
Possible bit patterns:
Definition at line 335 of file ncbiobj.hpp.
Referenced by CObject::ObjectStateCanBeDeleted(), and CObject::ObjectStateIsAllocatedInPool().
◆ eCounterBitsInPlainHeap ◆ eCounterBitsPlaceMask ◆ eCounterStateMask Initial value:=
static const TCount eCounterBitsPlaceMask
Mask for 'in heap' state flags.
static const TCount eCounterValid
Minimal value for valid objects (reference counter is zero) Must be a single bit value.
Valid object, and object in heap.
Definition at line 355 of file ncbiobj.hpp.
◆ eCounterStep const int CObject::eCounterStep = 1 << 2 static ◆ eCounterValid ◆ m_ChunkSize size_t CObjectMemoryPool::m_ChunkSize private ◆ m_CounterThe actual reference counter.
Definition at line 400 of file ncbiobj.hpp.
Referenced by CObject::AddReference(), CObject::DeleteThis(), CObject::DoDeleteThisObject(), CObject::DoNotDeleteThisObject(), CObject::InitCounter(), CObject::operator delete(), CObject::ReleaseReference(), CObject::RemoveLastReference(), CObject::RemoveReference(), CWeakObject::x_AddWeakReference(), and CObject::~CObject().
◆ m_CurrentChunk ◆ m_Data [1/3]template<class C , class Locker >
Pointer to object.
Definition at line 1248 of file ncbiobj.hpp.
Referenced by CRef< CAlnMixSegment >::AtomicReleaseTo(), CRef< CAlnMixSegment >::AtomicResetFrom(), CRef< CAlnMixSegment >::AtomicSwap(), CRef< CAlnMixSegment >::Empty(), CRef< CAlnMixSegment >::GetLocker(), CRef< CAlnMixSegment >::GetNCPointerOrNull(), CRef< CAlnMixSegment >::GetNonNullNCPointer(), CRef< CAlnMixSegment >::GetNonNullPointer(), CRef< CAlnMixSegment >::GetPointerOrNull(), CRef< CAlnMixSegment >::IsNull(), CRef< CAlnMixSegment >::NotEmpty(), CRef< CAlnMixSegment >::NotNull(), CRef< CAlnMixSegment >::operator!(), CConstRef< CSeq_loc >::operator=(), CRef< CAlnMixSegment >::operator=(), CRef< CAlnMixSegment >::Release(), CRef< CAlnMixSegment >::ReleaseOrNull(), CRef< CAlnMixSegment >::Reset(), CRef< CAlnMixSegment >::Swap(), CRef< CAlnMixSegment >::x_AssignFromRef(), CRef< CAlnMixSegment >::x_LockFromMoveConstructor(), CRef< CAlnMixSegment >::x_LockFromPtr(), CRef< CAlnMixSegment >::x_LockFromRef(), and CRef< CAlnMixSegment >::x_MoveAssign().
◆ m_Data [2/3]template<class C , class Locker >
Pointer to object.
Definition at line 1789 of file ncbiobj.hpp.
Referenced by CConstRef< CSeq_loc >::AtomicReleaseTo(), CConstRef< CSeq_loc >::AtomicResetFrom(), CConstRef< CSeq_loc >::AtomicSwap(), CConstRef< CSeq_loc >::Empty(), CConstRef< CSeq_loc >::GetLocker(), CConstRef< CSeq_loc >::GetNonNullPointer(), CConstRef< CSeq_loc >::GetPointerOrNull(), CConstRef< CSeq_loc >::IsNull(), CConstRef< CSeq_loc >::NotEmpty(), CConstRef< CSeq_loc >::NotNull(), CConstRef< CSeq_loc >::operator!(), CConstRef< CSeq_loc >::operator=(), CConstRef< CSeq_loc >::Release(), CConstRef< CSeq_loc >::ReleaseOrNull(), CConstRef< CSeq_loc >::Reset(), CConstRef< CSeq_loc >::Swap(), CConstRef< CSeq_loc >::x_AssignFromRef(), CConstRef< CSeq_loc >::x_LockFromMoveConstructor(), CConstRef< CSeq_loc >::x_LockFromPtr(), CConstRef< CSeq_loc >::x_LockFromRef(), and CConstRef< CSeq_loc >::x_MoveAssign().
◆ m_Data [3/3] ◆ m_Lockertemplate<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ m_MallocThreshold size_t CObjectMemoryPool::m_MallocThreshold private ◆ m_Proxytemplate<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
◆ m_Ptr ◆ m_SelfPtrProxy ◆ m_WeakPtr ◆ CConstRef [1/2]template<class C , class Locker >
template<class TDerived , class TLocker >
Definition at line 630 of file ncbiobj.hpp.
◆ CConstRef [2/2]template<class C , class Locker >
template<class TDerived , class TLocker >
Definition at line 1277 of file ncbiobj.hpp.
◆ CObjectMemoryPool ◆ CPtrToObjectProxy ◆ CReftemplate<class C , class Locker >
template<class TDerived , class TLocker >
Definition at line 629 of file ncbiobj.hpp.
◆ CWeakIRef< C, Locker >template<class C , class Locker = typename CWeakLockerTraits<C>::TLockerType>
Definition at line 2775 of file ncbiobj.hpp.
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