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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/graph__ci_8hpp_source.html below:

NCBI C++ ToolKit: include/objmgr/graph_ci.hpp Source File

84 return

GetAnnot() == graph.

GetAnnot

() &&

89 return

!(*

this

== graph);

93 return

(GetAnnot() < graph.

GetAnnot

()) ||

102 if

( !m_MappedGraph ) {

105 return

*m_MappedGraph;

110 return

GetOriginalGraph().IsSetTitle();

114 return

GetOriginalGraph().GetTitle();

119 return

GetOriginalGraph().IsSetComment();

123 return

GetOriginalGraph().GetComment();

128 if

( !m_MappedLoc ) {

136 return

GetOriginalGraph().IsSetTitle_x();

140 return

GetOriginalGraph().GetTitle_x();

145 return

GetOriginalGraph().IsSetTitle_y();

149 return

GetOriginalGraph().GetTitle_y();

154 return

GetOriginalGraph().IsSetComp();

158 return

GetOriginalGraph().GetComp();

163 return

GetOriginalGraph().IsSetA();

167 return

GetOriginalGraph().GetA();

172 return

GetOriginalGraph().IsSetB();

176 return

GetOriginalGraph().GetB();

181 if

( m_MappedGraph ) {

182 return

m_MappedGraph->GetNumval();

184 if

( !m_GraphRef->GetMappingInfo().IsMapped() ) {

185 return

GetOriginalGraph().GetNumval();

189

numval += it->GetLength();

202 const TRange

& GetMappedGraphTotalRange(

void

)

const

;

205 const TGraphRanges

& GetMappedGraphRanges(

void

)

const

;

216 void

MakeMappedGraph(

void

)

const

;

217 void

MakeMappedLoc(

void

)

const

;

218 void

MakeMappedGraphData(

CSeq_graph

& dst)

const

;

353 void

x_Update(

void

);

User-defined methods of the data storage class.

TAnnotIndex GetAnnotIndex(void) const

bool operator!=(const CAnnotTypes_CI &it) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

CVect2< NCBI_PROMOTE(int,U) > operator*(int v1, const CVect2< U > &v2)

bool IsValid(const CSeq_point &pt, CScope *scope)

Checks that point >= 0 and point < length of Bioseq.

vector< TRange > TGraphRanges

CGraph_CI & operator--(void)

const string & GetTitle_x(void) const

TSeqPos GetComp(void) const

const string & GetTitle(void) const

const CMappedGraph * operator->(void) const

CGraphRanges::TGraphRanges TGraphRanges

bool IsSetTitle(void) const

bool operator<(const CMappedGraph &graph) const

CSeq_annot_Handle GetAnnot(void) const

Get containing annot handle.

const string & GetTitle_y(void) const

TSeqPos GetNumval(void) const

bool operator!=(const CMappedGraph &graph) const

bool IsSetComp(void) const

CConstRef< CSeq_loc > m_MappedLoc

DECLARE_OPERATOR_BOOL(IsValid())

CGraphRanges::TRange TRange

CRef< CAnnot_Collector > m_Collector

CMappedGraph()

empty CMappedGraph

const CSeq_graph & GetMappedGraph(void) const

Graph mapped to the master sequence.

const CGraph_CI & begin() const

CGraph_CI & operator++(void)

CGraph_CI(const CGraph_CI &it, EAtEnd)

bool IsSetTitle_x(void) const

bool operator!=(const CGraph_CI &it) const

bool IsSetTitle_y(void) const

CGraph_CI(void)

Create an empty iterator.

const CMappedGraph & operator*(void) const

bool operator==(const CMappedGraph &graph) const

Check if it's the same graph.

CConstRef< CSeq_graph > m_MappedGraph

const CSeq_graph & GetOriginalGraph(void) const

Get original graph with unmapped location/product.

const CSeq_loc & GetLoc(void) const

bool IsSetComment(void) const

const string & GetComment(void) const

const CAnnotObject_Ref * m_GraphRef

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJMGR_EXPORT

ENa_strand

strand of nucleic acid

const TGraph & GetGraph(void) const

Get the Graph member data.

S & operator--(CNetRef< S > &r, int)

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