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NCBI C++ ToolKit: src/objmgr/graph_ci.cpp Source File

(from < src.size() && to <= src.size());

dst.insert(dst.end(), src.begin() + from, src.begin() + to);

( src_data.

() ) {

from = it->GetFrom()/comp;

to = it->GetTo()/comp + 1;

from = it->GetFrom()/comp;

to = it->GetTo()/comp + 1;

from = it->GetFrom()/comp;

to = it->GetTo()/comp + 1;

(

!= &iter ) {

CAnnotTypes_CI::operator=(iter);

bool MappedSeq_locNeedsUpdate(void) const

const CGraphRanges * GetGraphRanges(void) const

bool IsMapped(void) const

void UpdateMappedSeq_loc(CRef< CSeq_loc > &loc, CRef< CSeq_point > &pnt_ref, CRef< CSeq_interval > &int_ref, const CSeq_feat *orig_feat) const

bool IsPartial(void) const

const CSeq_loc & GetMappedSeq_loc(void) const

const CSeq_annot_Handle & GetSeq_annot_Handle(void) const

TAnnotIndex GetAnnotIndex(void) const

CAnnotMapping_Info & GetMappingInfo(void) const

CAnnot_Collector & GetCollector(void)

const TIterator & GetIterator(void) const

CRef< CCreatedFeat_Ref > m_CreatedMapped

void ReleaseRefsTo(CRef< CSeq_feat > *feat, CRef< CSeq_loc > *loc, CRef< CSeq_point > *point, CRef< CSeq_interval > *interval)

void ResetRefsFrom(CRef< CSeq_feat > *feat, CRef< CSeq_loc > *loc, CRef< CSeq_point > *point, CRef< CSeq_interval > *interval)

Helper class for mapping graphs.

void CopyGraphData(const TData &src, TData &dst, TSeqPos from, TSeqPos to)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

const TGraphRanges & GetRanges(void) const

const TRange & GetTotalRange(void) const

void MakeMappedGraph(void) const

CGraphRanges::TGraphRanges TGraphRanges

void MakeMappedLoc(void) const

const TGraphRanges & GetMappedGraphRanges(void) const

Get all mapped graph ranges.

CSeq_annot_Handle GetAnnot(void) const

Get containing annot handle.

void Set(CAnnot_Collector &collector, const CAnnotObject_Ref &annot_ref)

CConstRef< CSeq_loc > m_MappedLoc

CRef< CAnnot_Collector > m_Collector

void MakeMappedGraphData(CSeq_graph &dst) const

CGraph_CI(void)

Create an empty iterator.

CConstRef< CSeq_graph > m_MappedGraph

const CSeq_graph & GetOriginalGraph(void) const

Get original graph with unmapped location/product.

const CSeq_loc & GetLoc(void) const

CGraph_CI & operator=(const CGraph_CI &iter)

const CSeq_graph::C_Graph & GetGraph(void) const

const TRange & GetMappedGraphTotalRange(void) const

Get the range of graph data used in the mapped graph.

CSeq_graph_Handle GetSeq_graph_Handle(void) const

Get original graph handle.

const CAnnotObject_Ref * m_GraphRef

void Reset(void)

Reset reference object.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

ENa_strand

strand of nucleic acid

bool IsSetComp(void) const

compression (residues/value) Check if a value has been assigned to Comp data member.

void SetMin(TMin value)

Assign a value to Min data member.

void SetAxis(TAxis value)

Assign a value to Axis data member.

TValues & SetValues(void)

Assign a value to Values data member.

void SetAxis(TAxis value)

Assign a value to Axis data member.

TByte & SetByte(void)

Select the variant.

TMin GetMin(void) const

Get the Min member data.

const TInt & GetInt(void) const

Get the variant data.

void SetNumval(TNumval value)

Assign a value to Numval data member.

TAxis GetAxis(void) const

Get the Axis member data.

TReal & SetReal(void)

Select the variant.

TInt & SetInt(void)

Select the variant.

const TGraph & GetGraph(void) const

Get the Graph member data.

TValues & SetValues(void)

Assign a value to Values data member.

const TValues & GetValues(void) const

Get the Values member data.

TMin GetMin(void) const

Get the Min member data.

TMax GetMax(void) const

Get the Max member data.

const TByte & GetByte(void) const

Get the variant data.

void SetGraph(TGraph &value)

Assign a value to Graph data member.

void SetMax(TMax value)

Assign a value to Max data member.

const TReal & GetReal(void) const

Get the variant data.

void SetMax(TMax value)

Assign a value to Max data member.

TAxis GetAxis(void) const

Get the Axis member data.

TMin GetMin(void) const

Get the Min member data.

TMax GetMax(void) const

Get the Max member data.

void SetMax(TMax value)

Assign a value to Max data member.

const TValues & GetValues(void) const

Get the Values member data.

E_Choice Which(void) const

Which variant is currently selected.

const TValues & GetValues(void) const

Get the Values member data.

void SetAxis(TAxis value)

Assign a value to Axis data member.

void Reset(void)

Reset the whole object.

void SetMin(TMin value)

Assign a value to Min data member.

TComp GetComp(void) const

Get the Comp member data.

TMax GetMax(void) const

Get the Max member data.

void SetMin(TMin value)

Assign a value to Min data member.

TValues & SetValues(void)

Assign a value to Values data member.

TAxis GetAxis(void) const

Get the Axis member data.

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