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CCigar GlbAlign (const char *query, int querylen, const char *subject, int subjectlen, int gopen, int gapextend, const char delta[256][256]) CCigar LclAlign (const char *query, int querylen, const char *subject, int subjectlen, int gopen, int gapextend, const char delta[256][256]) CCigar LclAlign (const char *query, int querylen, const char *subject, int subjectlen, int gopen, int gapextend, bool pinleft, bool pinright, const char delta[256][256]) CCigar VariBandAlign (const char *query, int querylen, const char *subject, int subjectlen, int gopen, int gapextend, const char delta[256][256], const TSignedSeqRange *subject_limits) template<class T > int EditDistance (const T &s1, const T &s2) template<class T > int MaxCommonInterval (const T &a, const T &b, int long_enough=numeric_limits< int >::max()) double Entropy (const string &seq) ◆ TCharAlign ◆ EditDistance() ◆ Entropy() ◆ GlbAlign() ◆ LclAlign() [1/2] ◆ LclAlign() [2/2] ◆ MaxCommonInterval() ◆ VariBandAlign()Definition at line 672 of file glb_align.cpp.
References a, b, delta(), CRange_Base::GetFrom(), CRange_Base::GetTo(), i, int, last(), len, next(), CCigar::PushFront(), and swap().
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