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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gff__feature__record_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/writers/gff_feature_record.cpp Source File

wrapSize,

wrapPoint)

(wrapSize != 0 &&

< wrapPoint) {

mGapIsTrivial(

),

mAccumulatedMatches(0)

(!baseAttributes.empty()) {

@ eExtreme_Positional

numerical value

@ eExtreme_Biological

5' and 3'

void AddInsertion(unsigned int)

void AddMatch(unsigned int)

void AddReverseShift(unsigned int)

void AddDeletion(unsigned int)

unsigned int mAccumulatedMatches

string StrAttributes() const

void AddForwardShift(unsigned int)

CGffAlignRecord(const string &id="")

virtual string StrAttributes() const

void SetLocation(unsigned int, unsigned int, ENa_strand=objects::eNa_strand_unknown)

void SetStrand(ENa_strand)

bool SetAttribute(const string &, const string &)

static const char * ATTR_SEPARATOR

void InitLocation(const CSeq_loc &)

const CSeq_loc & Location() const

void SetLocation(const CSeq_interval &, unsigned int, unsigned int=0)

void SetGbKeyFrom(CMappedFeat)

void SetEndpoints(unsigned int start, unsigned int stop, ENa_strand strand)

CGffFeatureRecord(const string &id="")

virtual ~CGffFeatureRecord()

string GetKey(EVocabulary vocab=eVocabulary_full) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const struct attribute attributes[]

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Override Assign() to incorporate cache invalidation.

TSeqPos GetStart(ESeqLocExtremes ext) const

Return start and stop positions of the seq-loc.

TSeqPos GetStop(ESeqLocExtremes ext) const

ENa_strand GetStrand(const CSeq_loc &loc, CScope *scope=0)

Returns eNa_strand_unknown if multiple Bioseqs in loc Returns eNa_strand_other if multiple strands in...

const CSeqFeatData & GetData(void) const

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

ENa_strand

strand of nucleic acid

TFrom GetFrom(void) const

Get the From member data.

bool CanGetTo(void) const

Check if it is safe to call GetTo method.

bool IsSetStrand(void) const

Check if a value has been assigned to Strand data member.

TStrand GetStrand(void) const

Get the Strand member data.

TTo GetTo(void) const

Get the To member data.

bool CanGetFrom(void) const

Check if it is safe to call GetFrom method.

const struct ncbi::grid::netcache::search::fields::SIZE size

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