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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gff__base__record_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/writers/gff_base_record.cpp Source File

mMethod(other.mMethod),

mSeqStart(other.mSeqStart),

mSeqStop(other.mSeqStop),

mStrand(other.mStrand),

&

)

&

)

vector<string>&

)

(it == mAttributes.end() || it->second.empty()) {

vector<string>& values)

(values.empty()) {

[

] = vector<string>(values.begin(), values.end());

(vector<string>::const_iterator cit = values.begin();

cit != values.end(); ++cit) {

current = *cit;

vector<string>::iterator iit = std::find(

vector<string>& values)

[

] = vector<string>(values.begin(), values.end());

& seqId)

& method)

&

)

seqStart,

seqStop,

(

==

) {

& score)

(lhs->first < rhs->first);

(lhs->first < rhs->first);

vector<TAttrCit> SORTATTRS;

SORTATTRS sortedAttrs;

(ait->first !=

) {

sortedAttrs.push_back(ait);

(SORTATTRS::const_iterator cit = sortedAttrs.begin();

cit != sortedAttrs.end(); ++cit) {

&

= (*cit)->first;

got_values =

;

(

vit : (*cit)->second)

(!singleValue.empty()) {

vector<TScoreCit> SORTSCORES;

SORTSCORES sortedScores;

sortedScores.push_back(ait);

(

cit : sortedScores)

&

= cit->first;

&

= gapAttr->first;

&

)

constexpr

escaped_no_range = charset{ 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31,

,

,

,

,

,

, 0x7F,

};

constexpr

escaped_range_value = charset{ 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31,

,

,

,

,

,

, 0x7F };

& escaped = (

==

||

==

) ? escaped_range_value : escaped_no_range;

constexpr

hexa_numbers[] =

;

replacement[0] =

;

thread_local

;

(

= 0;

<

.size(); ++

)

replacement[1] = hexa_numbers[c / 16];

replacement[2] = hexa_numbers[c % 16];

.append(

.data() + last_pos,

- last_pos);

.append(replacement, 3);

TScores::const_iterator TScoreCit

void SetPhase(unsigned int)

TScores::iterator TScoreIt

virtual string StrType() const

virtual string StrSeqStop() const

virtual string StrAttributes() const

const string & xEscapedValue(const string &key, const string &value) const

bool DropAttributes(const string &)

virtual string StrScore() const

void SetSeqId(const string &)

void SetLocation(unsigned int, unsigned int, ENa_strand=objects::eNa_strand_unknown)

virtual ~CGffBaseRecord()

bool GetAttributes(const string &, vector< string > &) const

void SetType(const string &)

virtual string StrPhase() const

void SetMethod(const string &)

objects::ENa_strand SeqStrand() const

void SetStrand(ENa_strand)

bool SetAttribute(const string &, const string &)

TAttributes::iterator TAttrIt

TAttributes::const_iterator TAttrCit

const string & xEscapedString(const string &value) const

virtual string StrSeqStart() const

void SetScore(const CScore &)

bool AddAttributes(const string &, const vector< string > &)

bool SetAttributes(const string &, const vector< string > &)

virtual string StrSeqId() const

bool AddAttribute(const string &, const string &)

static const char * ATTR_SEPARATOR

virtual string StrStrand() const

CGffBaseRecord(const string &id="")

virtual string StrMethod() const

const_iterator begin() const

const_iterator end() const

iterator_bool insert(const value_type &val)

const_iterator find(const key_type &key) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const struct attribute attributes[]

bool lessScoreCit(const CGffBaseRecord::TScoreCit &lhs, const CGffBaseRecord::TScoreCit &rhs)

bool lessAttrCit(const CGffBaseRecord::TAttrCit &lhs, const CGffBaseRecord::TAttrCit &rhs)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string DoubleToString(double value, int precision=-1, TNumToStringFlags flags=0)

Convert double to string.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static string UIntToString(unsigned int value, TNumToStringFlags flags=0, int base=10)

Convert UInt to string.

bool IsStr(void) const

Check if variant Str is selected.

const TStr & GetStr(void) const

Get the variant data.

bool IsSetId(void) const

Check if a value has been assigned to Id data member.

bool IsReal(void) const

Check if variant Real is selected.

TInt GetInt(void) const

Get the variant data.

bool IsInt(void) const

Check if variant Int is selected.

const TValue & GetValue(void) const

Get the Value member data.

bool IsSetValue(void) const

Check if a value has been assigned to Value data member.

TReal GetReal(void) const

Get the variant data.

const TId & GetId(void) const

Get the Id member data.

ENa_strand

strand of nucleic acid

@ eNa_strand_both_rev

in reverse orientation

@ eNa_strand_both

in forward orientation

constexpr auto sort(_Init &&init)

const struct ncbi::grid::netcache::search::fields::KEY key

const GenericPointer< typename T::ValueType > T2 value

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