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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gff__base__columns_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/readers/gff_base_columns.cpp Source File

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62

m_strNormalizedType(

""

),

74

m_uSeqStart(rhs.m_uSeqStart),

75

m_uSeqStop(rhs.m_uSeqStop),

76

m_strSource(rhs.m_strSource),

77

m_strType(rhs.m_strType),

78

m_strNormalizedType(rhs.m_strNormalizedType),

112  return

seqidresolve(Id(),

flags

,

true

);

123

pLocation->

SetInt

().SetFrom(

static_cast<TSeqPos>

(SeqStart()));

124

pLocation->

SetInt

().SetTo(

static_cast<TSeqPos>

(SeqStop()));

126

pLocation->

SetInt

().SetStrand(Strand());

138  if

(!xInitFeatureLocation(

flags

, pFeature, seqidresolve)) {

141  if

(!xInitFeatureData(

flags

, pFeature)) {

144  return

xInitFeatureId(

flags

, pFeature);

153  unsigned int

featId = NextId();

156

pFeature->SetId(*pFeatId);

167

pFeature->SetLocation(*GetSeqLoc(

flags

, seqidresolve));

183

pFeature->SetData().SetCdregion().SetFrame(frame);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

CRef< CSeq_id > GetSeqId(TReaderFlags, SeqIdResolver=nullptr) const

virtual ~CGffBaseColumns()

virtual bool xInitFeatureId(TReaderFlags, CRef< CSeq_feat >) const

CRef< CSeq_loc > GetSeqLoc(TReaderFlags, SeqIdResolver seqidresolve=nullptr) const

static unsigned int msNextId

virtual bool xInitFeatureData(TReaderFlags, CRef< CSeq_feat >) const

virtual bool InitializeFeature(TReaderFlags, CRef< CSeq_feat >, SeqIdResolver=nullptr) const

virtual bool xInitFeatureLocation(TReaderFlags, CRef< CSeq_feat >, SeqIdResolver=nullptr) const

ENa_strand Strand() const

static CRef< CSeq_id > AsSeqId(const string &rawId, long flags=0, bool localInts=true)

Convert a raw ID string to a Seq-id, based in given customization flags.

Include a standard set of the NCBI C++ Toolkit most basic headers.

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TId & SetId(void)

Select the variant.

TLocal & SetLocal(void)

Select the variant.

@ eFrame_not_set

not set, code uses one

ENa_strand

strand of nucleic acid

static bool GetSeqId(const T &d, set< string > &labels, const string name="", bool detect=false, bool found=false)

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