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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gff3__alignment__data_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/writers/gff3_alignment_data.cpp Source File

Go to the SVN repository for this file.

(

==

) {

* strProtMatch =

;

* strEstMatch =

;

* strTransNucMatch =

;

* strCdnaMatch =

;

= strProtMatch;

= strCdnaMatch;

= strCdnaMatch;

= strTransNucMatch;

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

void SetScore(const CScore &)

virtual void SetMatchType(const CSeq_id &, const CSeq_id &)

static CGffFeatureContext sDummyContext

string StrAttributes() const

Include a standard set of the NCBI C++ Toolkit most basic headers.

static const char * str(char *buf, int n)

static EAccessionInfo IdentifyAccession(const CTempString &accession, TParseFlags flags=fParse_AnyRaw)

Deduces information from a bare accession a la WHICH_db_accession; may report false negatives on prop...

EAccessionInfo

For IdentifyAccession (below)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string DoubleToString(double value, int precision=-1, TNumToStringFlags flags=0)

Convert double to string.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

bool IsStr(void) const

Check if variant Str is selected.

const TStr & GetStr(void) const

Get the variant data.

bool IsSetId(void) const

Check if a value has been assigned to Id data member.

TInt GetInt(void) const

Get the variant data.

bool IsInt(void) const

Check if variant Int is selected.

const TValue & GetValue(void) const

Get the Value member data.

bool IsSetValue(void) const

Check if a value has been assigned to Value data member.

TReal GetReal(void) const

Get the variant data.

const TId & GetId(void) const

Get the Id member data.

const struct ncbi::grid::netcache::search::fields::KEY key

const GenericPointer< typename T::ValueType > T2 value

const CharType(& source)[N]

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