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NCBI C++ ToolKit: include/objtools/readers/gff2_data.hpp Source File

list<string>& )

;

vector<CTempStringEx>&

,

vector< string >& )

;

virtual bool xUpdateFeatureData(TReaderFlags, CRef< CSeq_feat >, SeqIdResolver=nullptr) const

bool IsMultiParent() const

TAttributes::const_iterator TAttrCit

static string xNormalizedAttributeValue(const CTempString &)

virtual bool xMigrateAttributes(TReaderFlags, CRef< CSeq_feat >) const

TAttributes::iterator TAttrIt

bool GetAttribute(const string &, string &) const

map< string, string > TAttributes

virtual bool UpdateFeature(TReaderFlags, CRef< CSeq_feat >, SeqIdResolver=nullptr) const

virtual bool AssignFromGff(const string &)

virtual bool InitializeFeature(TReaderFlags, CRef< CSeq_feat >, SeqIdResolver=nullptr) const

static void TokenizeGFF(vector< CTempStringEx > &columns, const CTempStringEx &line)

const TAttributes & Attributes() const

CGff2Record(const CGff2Record &rhs)

virtual bool xInitFeatureData(TReaderFlags, CRef< CSeq_feat >) const

static bool xMigrateAttributeDefault(TAttributes &, const string &, CRef< CSeq_feat >, const string &, TReaderFlags)

static bool xMigrateAttributeSingle(TAttributes &, const string &, CRef< CSeq_feat >, const string &, TReaderFlags)

virtual bool xMigrateAttributesGo(TReaderFlags, CRef< CSeq_feat >, TAttributes &) const

virtual bool xMigrateAttributesOrgName(TReaderFlags, CRef< CSeq_feat >, TAttributes &) const

virtual bool xMigrateAttributesSubSource(TReaderFlags, CRef< CSeq_feat >, TAttributes &) const

bool IsAlignmentRecord() const

bool xSplitGffAttributes(const string &, vector< string > &) const

static string xNormalizedAttributeKey(const CTempString &)

virtual bool xAssignAttributesFromGff(const string &, const string &)

const string & Type() const

CRef< CSeq_id >(*)(const string &, TReaderFlags, bool) SeqIdResolver

CTempString implements a light-weight string on top of a storage buffer whose lifetime management is ...

container_type::const_iterator const_iterator

container_type::iterator iterator

const_iterator begin() const

const_iterator end() const

iterator_bool insert(const value_type &val)

static const column_t columns[]

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

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