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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/genus__species__fixup_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/genus_species_fixup.cpp Source File

modified =

;

biosource.

().ResetCommon();

biosource.

(*new_org);

new_name = biosource.

().GetTaxname();

(!new_name.empty() && new_name != name)

vector<string> submit;

vector<CRef<COrg_ref>> request_list;

(

&& it : submit)

request_list.push_back(new_org);

(reply->IsSetReply() )

& ans = reply->GetReply();

(

&& it : ans)

it->GetData().IsSetOrg() &&

it->GetData().GetOrg().GetTaxId() >= 0)

org->

(it->GetData().GetOrg());

vector<string> words;

(words.size() == 1)

vector<string> subwords;

(

= 0;

< subwords.size() - 1;

++)

new_name = subwords[0];

(

j = 1; j <=

; j++)

new_name +=

+ subwords[j];

new_name +=

+ subwords[

+1];

(

j =

+2; j < subwords.size(); j++)

new_name +=

+ subwords[j];

submit.push_back(new_name);

(words.size() == 2)

new_name = words[0] +

+ words[1] +

+ words[2] +

+ words[3];

submit.push_back(new_name);

new_name = words[0] +

+ words[1] +

+ words[2];

submit.push_back(new_name);

(words.size() >= 2)

new_name = words[0] +

+ words[1];

submit.push_back(new_name);

User-defined methods of the data storage class.

const string & GetTaxname(void) const

bool IsSetTaxname(void) const

static void s_PermuteTaxname(const string &name, vector< string > &submit)

static void s_GetNameFromTaxonServer(CRef< objects::COrg_ref > org)

CRef< CCmdComposite > GetCommand(objects::CSeq_entry_Handle tse)

virtual bool x_ApplyToBioSource(objects::CBioSource &biosource)

static bool s_HasTaxId(const objects::CBioSource &)

virtual CRef< CTaxon3_reply > SendOrgRefList(const vector< CRef< COrg_ref > > &list, COrg_ref::fOrgref_parts result_parts=COrg_ref::eOrgref_default, fT3reply_parts t3result_parts=eT3reply_default)

CRef< CCmdComposite > x_GetCommand(objects::CSeq_entry_Handle tse, const string &title)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

@ fSplit_Tokenize

All delimiters are merged and trimmed, to get non-empty tokens only.

@ eNocase

Case insensitive compare.

void SetSubtype(TSubtype value)

Assign a value to Subtype data member.

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

const TOrg & GetOrg(void) const

Get the Org member data.

void SetOrg(TOrg &value)

Assign a value to Org data member.

void SetName(const TName &value)

Assign a value to Name data member.

TSubtype & SetSubtype(void)

Assign a value to Subtype data member.

const TTaxname & GetTaxname(void) const

Get the Taxname member data.

void SetTaxname(const TTaxname &value)

Assign a value to Taxname data member.

#define EDIT_EACH_ORGMOD_ON_ORGNAME(Itr, Var)

#define ERASE_ORGMOD_ON_ORGNAME(Itr, Var)

ERASE_ORGMOD_ON_ORGNAME.

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