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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/genomic__compart_8hpp_source.html below:

NCBI C++ ToolKit: include/algo/align/util/genomic_compart.hpp Source File

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diff_len_filter=3.0f);

Include a standard set of the NCBI C++ Toolkit most basic headers.

void FindCompartments(const list< CRef< CSeq_align > > &aligns, list< CRef< CSeq_align_set > > &align_sets, TCompartOptions options=fCompart_Defaults, float diff_len_filter=3.0f)

void JoinCompartment(const CRef< CSeq_align_set > &compartment, float gap_ratio, list< CRef< CSeq_align > > &aligns)

@ fCompart_AllowIntersectionsSubject

@ fCompart_SortByPctIdent

@ fCompart_FilterByDiffLen

@ fCompart_AllowIntersectionsBoth

@ fCompart_AllowIntersections

@ fCompart_AllowIntersectionsQuery

@ fCompart_AllowInconsistentIntersection

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XALGOALIGN_EXPORT

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