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NCBI C++ ToolKit: include/algo/align/util/genomic_compart.hpp File Reference

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Definition at line 43 of file genomic_compart.hpp.

Definition at line 385 of file genomic_compart.cpp.

References set< Key, Compare >::begin(), count, Difference(), eNa_strand_minus, eNa_strand_plus, set< Key, Compare >::end(), fCompart_AllowInconsistentIntersection, fCompart_AllowIntersectionsBoth, fCompart_AllowIntersectionsQuery, fCompart_AllowIntersectionsSubject, fCompart_FilterByDiffLen, fCompart_SortByPctIdent, fCompart_SortByScore, CSeq_id_Handle::GetHandle(), hex(), i, set< Key, Compare >::insert(), int, IsConsistent(), IsIntersectingQuery(), IsIntersectingSubject(), ITERATE, kMax_Int, max(), min(), NON_CONST_ITERATE, r(), SCompartScore::Reset(), CRef< C, Locker >::Reset(), REVERSE_ITERATE, CSeq_align_set_Base::Set(), ct::sort(), swap(), SCompartScore::total_range, and SCompartScore::total_size.

Referenced by BOOST_AUTO_TEST_CASE(), CAdvancedAlignCleanup::GetGenomicCompartments(), CTestCompartApplication::Run(), CBLASTSeqToolJob::x_CreateProjectItems(), and CMergeAligner::x_MergeAlignments().

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