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1 #ifndef ALGO_BLAST_GUMBEL_PARAMS__GENERAL_SCORE_MATRIX___HPP 2 #define ALGO_BLAST_GUMBEL_PARAMS__GENERAL_SCORE_MATRIX___HPP 71 unsigned intsub_size = 25);
79 const char* alphabet =
NULL);
123 Int4GetScore(
char a,
char b)
const;
154 return "UnknownError";
Exceptions for CGeneralScoreMatrix.
virtual const char * GetErrCodeString(void) const override
Get error code interpreted as text.
NCBI_EXCEPTION_DEFAULT(CGeneralScoreMatrixException, CException)
Score matrix that can take any value.
const char * GetResidueOrder(void) const
Get order of residues in the score matrix.
unsigned int GetNumResidues(void) const
Get number of residues.
CGeneralScoreMatrix & operator=(const CGeneralScoreMatrix &)
Forbid assignment operator.
unsigned int m_NumResidues
EScoreMatrixName
Names of standard scoring matrices.
const Int4 ** GetMatrix(void) const
Access matrix values.
TErrCode GetErrCode(void) const
Get error code.
int32_t Int4
4-byte (32-bit) signed integer
uint32_t Uint4
4-byte (32-bit) unsigned integer
#define END_NCBI_SCOPE
End previously defined NCBI scope.
#define END_SCOPE(ns)
End the previously defined scope.
#define BEGIN_NCBI_SCOPE
Define ncbi namespace.
#define BEGIN_SCOPE(ns)
Define a new scope.
const struct ncbi::grid::netcache::search::fields::SIZE size
Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.
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