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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gene__utils_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/edit/gene_utils.cpp Source File

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50  const CGene_ref

* gene = feat.GetGeneXref();

bool IsSuppressed(void) const

namespace ncbi::objects::

CSeq_feat_Handle GetGeneWithLocus(const string &locus, bool tag) const

Find genes by locus, locus tag, or Gene-ref.

Include a standard set of the NCBI C++ Toolkit most basic headers.

CMappedFeat GetBestOverlappingFeat(const CMappedFeat &feat, CSeqFeatData::ESubtype need_subtype, sequence::EOverlapType overlap_type, CFeatTree *feat_tree=0, const SAnnotSelector *base_sel=0)

@ eOverlap_Contained

2nd contained within 1st extremes

CBioseq_Handle GetBioseqFromSeqLoc(const CSeq_loc &loc, CScope &scope, CScope::EGetBioseqFlag flag=CScope::eGetBioseq_Loaded)

Retrieve the Bioseq Handle from a location.

CConstRef< CSeq_feat > GetGeneForFeature(const CSeq_feat &feat, CScope &scope)

Finds gene for feature, but obeys SeqFeatXref directives.

const CTSE_Handle & GetTSE_Handle(void) const

Get CTSE_Handle of containing TSE.

CConstRef< CSeq_feat > GetOriginalSeq_feat(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

bool CanGetLocus(void) const

Check if it is safe to call GetLocus method.

bool CanGetLocus_tag(void) const

Check if it is safe to call GetLocus_tag method.

const TLocus_tag & GetLocus_tag(void) const

Get the Locus_tag member data.

const TLocus & GetLocus(void) const

Get the Locus member data.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.


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