Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gene__model__track_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq_graphic/gene_model_track.cpp Source File

DECLARE_EVENT_TABLE()

features: gene, RNAs, coding regions and Exons.

model is

group of \

linked gene, RNAs, coding regions and Exons.

gene model may contain one \

more pairs of linked RNA and coding region.");

, m_AnnotNameUpdated(

)

m_DS->SetJobListener(

);

m_cdsFeatSel.IncludeFeatSubtype(subtype);

x_RegisterIcon(

(eIcon_Content,

,

,

));

(eIcon_Layout,

,

,

));

title =

;

(vis_range.

()) {

( ; feature_iter; ++feature_iter) {

seq_entry.

().push_back(pAnnot);

(

<<

);

(preset_style.empty()) {

(

));

item = menu.AppendCheckItem(

+ curr_id++,

(

));

item = menu.AppendCheckItem(

item = menu.AppendCheckItem(

wxMenuItem* item = menu.AppendRadioItem(id_base + iter->first,

wxMenuItemList& item_list = menu.GetMenuItems();

(wxMenuItemList, iter, item_list) {

label1 < label2;

= objs.size();

*

(objs.front().GetPointer());

the_genes.push_back(*iter);

gene_track_label;

gene_track_label += count_str +

;

gene_track_label +=

+ count_str +

;

(

.m_ExtraObj.NotEmpty()) {

(

);

hist_track->

(

);

container->

(gene_track_label);

(

+ gene_track_label);

(

.m_ObjectList.empty()) {

+ (

> 1 ?

:

));

( !requests.empty() ) {

obj_num = objs.size();

(obj_num == 0 || !

.m_Owner) {

parent_group->

(p_feat, group);

feat->

().GetData().GetSubtype()));

group->Update(

);

group->UpdateLayout();

(

.m_Results.empty()) {

((

.m_ObjectList.empty() && !

.m_ExtraObj) ||

( !

.m_ObjectList.empty() ) {

(

& obj :

.m_ObjectList) {

groups[feat->

().GetData().GetSubtype()].push_back(obj);

last_group = p_feat;

(

& gr : groups) {

parent_group->

(last_group, group);

group->Set(gr.second);

parent_group->

(

);

(dbxrefHighlights.

() == it_geneid)

need_highlight =

;

CLayoutGroup::TObjectList::iterator iter = objs.begin();

(iter != objs.end()) {

obj_cnt = objs.size();

group->HideGeneAndLabel();

}

( !compact_mode ) {

group->HideGeneAndLabel();

(!group->GetChildren().empty()) {

* first_glyph = group->SetChildren().front();

feat_confs, feat, requests, compact_mode)) {

need_highlight =

;

group->SetHighlighted(

);

group->SetParentFeat(parent_gene);

group->SetLayoutPolicy(

);

group->SetGroup().SetRenderingContext(

);

feat_confs,

, requests, compact_mode)) {

need_highlight =

;

(need_highlight) {

group->SetHighlighted(

);

(feat->

().GetData().GetSubtype() ==

group->SetLayoutPolicy(

);

group->SetLayoutPolicy(

);

feat_confs,

, requests, compact_mode)) {

need_highlight =

;

group->SetHighlighted(

);

feat->SetHideLabel(

);

feat->SetHighlighted(

);

need_highlight =

;

feat->GetFeature().GetData().GetSubtype();

show_product = feat->GetFeature().IsSetProduct() &&

(

= obj_cnt;

<= objs.size(); ++

) {

need_highlight;

p_areas->push_back(area);

(range.

()) {

( !src_annots.

() ) {

( !params.

.empty() ) {

r_cntx, params, gene_annots);

need_unnamed_track =

;

has_unnamed_track = gene_annots.count(unnamed_a) > 0;

list<int> rna_subtypes;

rna_subtypes.push_back(iter->GetSubtype());

( !src_annots.

() ) {

(list<int>, st_iter, rna_subtypes) {

( !has_unnamed_track && rna_annots.count(unnamed_a) > 0 ) {

rna_annots.

(rna_i);

need_unnamed_track =

;

( !rna_annots.

() && gene_i != gene_annots.

()) {

(rna_i != rna_annots.

()) {

rna_annots.

(rna_i);

( !src_annots.

() ) {

( !has_unnamed_track && cds_annots.count(unnamed_a) > 0 ) {

cds_annots.

(rna_i);

need_unnamed_track =

;

gene_i = gene_annots.

();

( !cds_annots.

() && gene_i != gene_annots.

()) {

(cds_i != cds_annots.

()) {

cds_annots.

(cds_i);

( !src_annots.

() ) {

gene_i = gene_annots.

();

( !exon_annots.

() && gene_i != gene_annots.

()) {

(exon_i != exon_annots.

()) {

exon_annots.

(exon_i);

unique_annots.

(iter->first);

( !unique_annots.

(iter->first).second ) {

rna_cds_exon_annots.

(*iter);

( !unique_annots.

(iter->first).second ) {

rna_cds_exon_annots.

(*iter);

rna_annots.

(iter->first);

cds_annots.

(iter->first);

exon_annots.

(iter->first);

gene_annots.

(*iter);

( !rna_annots.

() ) {

feat_params.

.push_back(iter->first);

(list<int>, st_iter, rna_subtypes) {

, ds_context, r_cntx, feat_params, src_annots);

( !rna_tracks.

()) {

tracks[iter->first] = rna_tracks.

()->second;

feat_params.

.push_back(iter->first);

, ds_context, r_cntx, feat_params, src_annots);

(!cds_tracks.

()) {

tracks[iter->first] = cds_tracks.

()->second;

feat_params.

.push_back(iter->first);

, ds_context, r_cntx, feat_params, src_annots);

(!exon_tracks.

()) {

tracks[iter->first] = exon_tracks.

()->second;

(need_unnamed_track) {

gene_model->SetAnnot(iter->first);

( !iter->second.empty() ) {

gene_model->SetTitle(iter->second);

tracks[iter->first] = gene_model.

();

(!params.

.empty())

;

list<int> rna_subtypes;

rna_subtypes.push_back(iter->GetSubtype());

(list<int>, st_iter, rna_subtypes) {

config_set->

().push_back(

);

->SetLegend_text(

);

);

choice->SetValues().push_back(

,

));

choice->SetValues().push_back(

,

,

));

choice->SetValues().push_back(

,

,

));

choice->SetValues().push_back(

,

,

));

choice->SetValues().push_back(

,

));

choice->SetValues().push_back(

,

,

));

->SetChoice_list().push_back(choice);

options_condition->SetName(

);

,

, gm_settings.

,

);

cb->SetConditions().push_back(options_condition);

->SetCheck_boxes().emplace_back(cb.Release());

,

,gm_settings.

,

);

cb->SetConditions().push_back(options_condition);

->SetCheck_boxes().push_back(cb);

,

, gm_settings.

,

);

cb->SetConditions().push_back(options_condition);

->SetCheck_boxes().push_back(cb);

,

,

, gm_settings.

,

);

cb->SetConditions().push_back(options_condition);

->SetCheck_boxes().push_back(cb);

,

, gm_settings.

);

options_condition->SetName(

);

cb->SetConditions().push_back(options_condition);

->SetCheck_boxes().push_back(cb);

->SetHidden_settings().push_back(

->SetHidden_settings().push_back(

->SetHidden_settings().push_back(

->SetHidden_settings().push_back(

(range.

()) {

vector<string> filters;

filters.push_back(params.

);

filters = seq_ds->

(iter->first, range);

(vector<string>, f_iter, filters) {

gene_model->SetAnnot(iter->first);

( !iter->second.empty() ) {

gene_model->SetTitle(iter->second);

gene_model->SetFilter(*f_iter);

User-defined methods of the data storage class.

CAppJobNotification Notification send by CAppJobEventTranslator.

CBatchJobResult – the data structure holding the seqgraphic job results for a batch job processing.

vector< CRef< CSGJobResult > > TResults

void SetCdsConfig(CCdsConfig *config)

CCdsGlyph inline methods.

CCompactLayout is amed to generate more compact 2D layout policy than layered layout for glyphs with ...

void SetMinDist(TSeqPos dist)

CDataTrack - a abstract base class for layout tracks which need to deal with background data retrieva...

const TSeqRange & x_GetVisRange() const

virtual void x_OnAllJobsFinished()

virtual void SetHideLabel(bool b)

Force to hide label.

void SetProjectedFeat(bool f)

void SetConfig(CConstRef< CFeatureParams > conf)

const objects::CMappedFeat & GetMappedFeature(void) const

Access a new, fully remapped feature.

const objects::CSeq_feat & GetFeature(void) const

Access the original feature.

void GetLabel(string &label, CLabel::ELabelType type) const

retrieve feature label for a given type

CConfigurableItems - a static list of items that can be configured.

string GetStoragekey(int type, int subtype) const

Get the key used to store this type of feature.

static void CreateMicroIntrons(objects::CScope &scope, objects::CBioseq_Handle bsh, const string &annot_name="", TSeqRange *range=NULL, bool ignore_errors=false)

virtual TTrackMap CreateTracks(SConstScopedObject &object, ISGDataSourceContext *ds_context, CRenderingContext *r_cntx, const SExtraParams &params=SExtraParams(), const TAnnotMetaDataList &src_annots=TAnnotMetaDataList()) const

create a layout track based on the input objects and extra parameters.

void OnContextMenu(wxContextMenuEvent &anEvent)

CGeneModelTrack * m_Track

void x_OnToggleContent(wxCommandEvent &event)

CGeneContentEvtHandler(CGeneModelTrack *track)

CGeneGroup is a subclass of CLayoutGroup contains gene, RNA, cds, and Exon features.

bool m_CCDSOnly

Show only CCDS variants.

bool m_ShowCDSProductFeats

CDS associated protein features.

bool m_ShowNtRuler

Show nucleotide ruler.

EMergeStyle m_MergeStyle

the way on how to merge CDSs and RNAs.

static const string & OptionValueToStr(CGeneModelConfig::ERenderingOption option)

bool m_ShowAaRuler

Show protein ruler.

bool m_SelectOnly

Show only Select/MANE variants.

void SaveSettings(CConstRef< CSeqGraphicConfig > g_conf, const string &reg_path, const string &profile) const

void UpdateSettings(const CSGConfigUtils::TKeyValuePairs &settings)

bool m_HideNonCoding

Hide transcripts without associated CDS.

void LoadSettingsPartial(const string &reg_path, const string &profile)

void LoadSettings(CConstRef< CSeqGraphicConfig > g_conf, const string &reg_path, const string &profile)

bool m_ShowVDJCs

show VDJ_segments and C_region

CRef< CBoundaryParams > m_GeneBoxConfig

bool m_ShowHistogram

show gene distribution histogram.

ERenderingOption

rendering options on how to render features overall.

@ eOption_SingleLine

merge all RNAs and CDSs into one line

@ eOption_MergeAll

merge all RNAs and CDSs, show exons, no gene bar

@ eOption_ShowAll

show all features individually

@ eOption_MergePairs

merge each RNA and CDS pair, show exons, no gene bar

@ eOption_ShowAllButGenes

show all RNAs, CDSs and exons, no gene bar

@ eOption_GeneOnly

show gene bar only

string SaveSettingsAsString(const string &preset_style) const

CRef< CCdsConfig > m_CdsConfig

EMergeStyle

style on how to merge RNAs and CDSs.

@ eMerge_OneLine

merge into one line

@ eMerge_Pairs

merge each transcript and CDS pair

@ eMerge_All

merge all transcripts and CDSs

@ eMerge_No

show all feature individually

bool m_HideModels

Hide Model RefSeqs.

bool m_ShowLabel

Show labels.

virtual const CTrackTypeInfo & GetThisTypeInfo() const override

TTrackMap x_CreateTracksWithFilters(SConstScopedObject &object, ISGDataSourceContext *ds_context, CRenderingContext *r_cntx, const SExtraParams &params, const TAnnotNameTitleMap &annots) const

virtual CRef< objects::CTrackConfigSet > GetSettings(const string &profile, const TKeyValuePairs &settings, const CTempTrackProxy *track_proxy) const override

virtual string GetExtensionLabel() const override

returns a displayable label for this extension ( please capitalize the key words - "My Extension" )

virtual TTrackMap CreateTracks(SConstScopedObject &object, ISGDataSourceContext *ds_context, CRenderingContext *r_cntx, const SExtraParams &params=SExtraParams(), const TAnnotMetaDataList &src_annots=TAnnotMetaDataList()) const override

CGeneModelFactory.

virtual string GetExtensionIdentifier() const override

returns the unique human-readable identifier for the extension the id should use lowercase letters se...

virtual void GetMatchedAnnots(const TAnnotMetaDataList &src_annots, const ILayoutTrackFactory::SExtraParams &params, TAnnotNameTitleMap &out_annots) const override

objects::SAnnotSelector m_cdsFeatSel

virtual void x_OnAllJobsFinished() override

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const override

Get html active areas.

wxEvtHandler * m_ContentHandler

wx-related event handler.

bool x_NeedHighlight(const CFeatGlyph &feat_glyph) const

void x_AddFeatProductLayout(CBatchJobResult &results)

objects::SAnnotSelector m_LandMarkFeatSel

CRef< CGeneModelConfig > m_Conf

void GenerateAsn1(objects::CSeq_entry &seq_entry, TSeqRange range) override

void x_AddCDSProduct_FeatsLayout(CSGJobResult &result)

void x_OnContentIconClicked()

static CTrackTypeInfo m_TypeInfo

virtual string GetFullTitle() const override

get a more meaningful title.

virtual void x_SaveSettings(const string &preset_style) override

save part of settings to a profile string.

virtual void x_UpdateBoundingBox() override

Update the bounding box assuming children's sizes are fixed if any.

void OnToggleContent(int id)

CRef< CSGFeatureDS > m_DS

objects::SAnnotSelector m_MainSel

void x_OnLayoutIconClicked()

virtual void x_OnJobCompleted(CAppJobNotification &notify) override

virtual const CTrackTypeInfo & GetTypeInfo() const override

void x_SaveConfiguration() const

save all track settings to the configuration file.

set< objects::CSeqFeatData::ESubtype > m_subtypes

Text inidcating that some transcripts were filtered out.

virtual ~CGeneModelTrack()

virtual void x_UpdateData() override

update track content.

virtual void GetFeatSubtypes(set< objects::CSeqFeatData::ESubtype > &subtypes) const override

virtual void x_OnIconClicked(TIconID id) override

Mouse left-click event handler on an icon.

CRef< CCompactLayout > m_Compact

virtual void x_LoadSettings(const string &preset_style, const TKeyValuePairs &settings) override

load the track settings.

void x_AddLandMarkFeaturesLayout(CSGJobResult &result)

bool m_AnnotNameUpdated

flag for indicating if we have used a more meaningful annotation name.

void x_AddMainFeaturesLayout(const CSGJobResult &result)

void SetAnnot(const string &annot)

bool x_InitFeature_Recursive(CLayoutGroup::TObjectList &objs, TFeatConfigMap &feat_confs, const CFeatGlyph *parent_gene, TFeatBatchJobRequests &requests, bool compact_mode)

virtual void x_UpdateBoundingBox()

Update the bounding box assuming children's sizes are fixed if any.

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

void Add(CSeqGlyph *obj)

Append a layout object to the end.

const TKeyHighlights & GetHighlightsByKey() const

void SetLabelGlyphs(const CSeqGlyph::TObjects &objs, CRef< CCommentConfig > config)

void SetObjects(const CLayoutGroup::TObjectList &objs)

const THighlights & GetHighlights() const

CGlyphContainer(CRenderingContext *r_cntx)

CLayoutGroup & SetGroup()

CRef< CInlineLayout > m_Inline

const CLayoutGroup::TObjectList & GetChildren() const

CLayoutGroup::TObjectList & SetChildren()

CRef< CLayeredLayout > m_Layered

CRef< CSimpleLayout > m_Simple

void SetLayoutPolicy(ILayoutPolicy *policy)

Set policy on how to deploy the layout of its children.

@ fNoHighlight

no highlighting on mouse over

@ fDrawBackground

highlight background for this area

@ fComment

render a label/comment on client side

@ fNoSelection

the object can't be selected

@ fTooltipEmbedded

tooltip embedded

string m_ID

area identifier

int m_Flags

area flags, will need to replace m_Type

string m_ParentId

parent entity idendifier, such as track_id

bool m_PositiveStrand

the default is true

void SetDialogHost(IGlyphDialogHost *host)

void SetConfig(const CSeqGraphicConfig &config)

CJobResultBase – the basic job result class holding a token.

CLayoutGroup is a container of CSeqGlyphs (layout objects).

virtual void Update(bool layout_only)

Update content and layout including the bounding box.

void InsertAft(const CSeqGlyph *at_obj, CSeqGlyph *obj)

Insert a layout object after the given layout object.

ILayoutPolicy::TObjectList TObjectList

void SetTrackAttr(TTrackAttrFlags flags)

int m_IndentLevel

track hierachy indentation level.

void SetTitle(const string &label, const string &default_title=NcbiEmptyString)

@ eIcon_Content

icon id for setting content

@ eIcon_Layout

icon id for setting layout style

void SetIndent(int indent)

ILayoutTrackHost * m_LTHost

Top level host owning the tracks.

string m_Msg

special message need to show on title bar

string GetTitle() const

get the track title.

TTrackAttrFlags m_Attrs

various track attributes

const string & GetId() const

void SetConfig(CRef< CSeqGraphicConfig > conf)

virtual void x_OnIconClicked(TIconID id)

Mouse left-click event handler on an icon.

@ fNavigable

Track has navigation controls.

@ fShowAlways

always be rendered even for an empty track.

@ fFullTrack

track occupying the full horizontal screen.

const string & GetProfile() const

void x_SetStatus(const string &msg, int progress)

TModelUnit x_GetTBHeight() const

Get title bar height including margin.

void SetMsg(const string &msg)

CConstRef< CSeqGraphicConfig > x_GetGlobalConfig() const

Method for getting global configuration from rendering context.

void SetProfile(const string &preset_style)

CLayoutTrack inline method implmentation.

CRef< CSeqGraphicConfig > m_gConfig

global configuration.

int TIconID

use int as TIconID instead of EIconID.

CLinkedFeatsGroup is a container class contains related features.

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

ostream & AsString(ostream &s) const

CRenderingContext offers the basic context and utility methods for rendering layout objects in featur...

const TSeqRange & GetVisSeqRange() const

const TModelUnit & GetScale() const

TModelUnit ScreenToSeq(const TModelUnit &size) const

convert from screen pixels to sequence positions

bool IsOverviewMode() const

static bool IsBackgroundJob()

void LoadGeneModelFeatures(objects::SAnnotSelector &lm_feat_sel, objects::SAnnotSelector &m_feat_sel, TJobToken lm_token, TJobToken main_token, bool landmark_feat, const TSeqRange &range, TModelUnit window, const CRef< CGeneModelConfig > &conf)

load features for gene model.

void GetAnnotNames(objects::SAnnotSelector &sel, const TSeqRange &range, TAnnotNameTitleMap &names) const

void SetSortBy(const string &sortby)

void SetFilter(const string &filter)

CSGFeatureDS inline method.

virtual void LoadFeatures(objects::SAnnotSelector &sel, const TSeqRange &range, TModelUnit window, TJobToken token=-1, int max_feat=-1, ELinkedFeatDisplay LinkedFeatDisplay=ELinkedFeatDisplay::eLFD_Default, const string &extra_filter="")

vector< string > GetFilters(const string &annot_name, const TSeqRange &range) const

objects::CScope & GetScope(void) const

Get the scope from the handle.

virtual bool AllJobsFinished() const

objects::CBioseq_Handle & GetBioseqHandle(void)

Get the underlying bioseq handle.

virtual void ClearJobID(TJobID job_id)

void SetDepth(int depth)

Set the annotation selector resolving depth.

virtual void DeleteAllJobs()

Remove waiting jobs from queue or cancel the unfinished jobs.

void SetAdaptive(bool flag)

CSGJobResult – the data structure holding the seqgraphic job results.

static bool IsmRNA(const objects::CBioseq_Handle &handle, objects::CScope &scope)

ESubtype GetSubtype(void) const

static const CFeatList * GetFeatList()

@ eSubtype_mat_peptide_aa

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

void SetHighlightsColor(const CRgbaColor &hl_color)

void x_InitHTMLActiveArea(CHTMLActiveArea &area) const

initialize the basic information for a given active area.

CRenderingContext * m_Context

the rendering context

virtual void SetHeight(TModelUnit h)

void SetParent(CSeqGlyph *p)

virtual TModelUnit GetTop() const

virtual TModelUnit GetHeight() const

unique_ptr< CRgbaColor > m_HighlightsColor

Highlight color.

virtual void SetTop(TModelUnit b)

vector< CHTMLActiveArea > TAreaVector

void SetHighlighted(bool flag)

list< CRef< CSeqGlyph > > TObjects

void SetRenderingContext(CRenderingContext *context)

Set the rendering context.

bool IsHighlighted() const

bool GetShowSimpleComments() const

CConstRef< CFeatureParams > GetFeatParams(TFeatSubtype subtype) const

Get feature settings using a feature subtype.

int GetObjectSpace() const

bool GetShowComments() const

namespace ncbi::objects::

CConstRef< CDbtag > GetNamedDbxref(const CTempString &db) const

Return a specified DB xref.

class CStaticArrayMap<> provides access to a static array in much the same way as CStaticArraySet<>,...

static CRef< objects::CChoice > CreateChoice(const string &name, const string &disp_name, const string &curr_val, const string &help, bool optional=false)

static CRef< objects::CHiddenSetting > CreateHiddenSetting(const string &name, const string &value)

static CRef< objects::CCheckBox > CreateCheckBox(const string &name, const string &disp_n, const string &help_text, const string &legend_txt, bool value, bool optional=false)

static CRef< objects::CChoiceItem > CreateChoiceItem(const string &name, const string &disp_name, const string &help, const string &legend_txt, bool optional=false)

CTrackTypeInfo - holds description of a layout track type.

const string & GetDescr() const

const string & GetId() const

IGlyphDialogHost An interface used for handling issues related to any dialog pops up that requires so...

static string MergeAnnotAndFilter(const string &annot, const string &filter)

create a new name based on annotation name and fitler string.

static void GetMatchedAnnots(const TAnnotMetaDataList &src_annots, const vector< string > &target_annots, const string &annot_type, const string &track_type, TAnnotNameTitleMap &out_annots)

Help function to find matched annotations.

virtual void LTH_PopupMenu(wxMenu *menu)=0

show track-specific context menu.

virtual void LTH_PushEventHandler(wxEvtHandler *handler)=0

virtual void LTH_PopEventHandler()=0

ISGDSManager is seqgraphic data source manage that serves as an data source context.

virtual CIRef< ISGDataSource > GetDS(const string &type, SConstScopedObject &object)=0

Get a seqgraphic data source instance of the specified type.

container_type::const_iterator const_iterator

container_type::iterator iterator

const_iterator begin() const

const_iterator end() const

iterator_bool insert(const value_type &val)

container_type::value_type value_type

const_iterator find(const key_type &key) const

iterator_bool insert(const value_type &val)

int main(int argc, const char *argv[])

CStaticArrayMap< string, CGeneModelConfig::EMergeStyle > TStyleMap

static const string kTrackName

static const size_t kMaxGenesOverviewRows

static const size_t kMaxCompactRows

static const size_t kContentBaseID

CGeneModelTrack.

static const string kGeneIdDb("GeneID")

static const size_t kCompactThreshold

static const string kBaseKey

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

static string GetAnnotName(const objects::CSeq_annot_Handle &annot_handle)

static const string & GetUnnamedAnnot()

Get the commonly used symbol representing a unnnamed annotation.

static bool IsUnnamed(const string &annot)

check if a given annotation is a unnamed annotation.

static TAnnotNameType NameTypeStrToValue(const string &type)

static void SetResolveDepth(objects::SAnnotSelector &sel, bool adaptive, int depth=-1)

help function for setting selector resolve depth.

@ eAnnot_Unnamed

unnamed annotation

IRender & GetGl()

convenience function for getting current render manager

virtual bool IsPrinterFriendly() const =0

void Set(float r, float g, float b)

set the color from an Fl_Color

CRef< CObject > GetResult() const

returns non-null pointer only if Completed or Running and has temporary results available

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

string GetLabel(const CSeq_id &id)

@ fFGL_Content

Include its content if there is any.

SAnnotSelector & SetFeatType(TFeatType type)

Set feature type (also set annotation type to feat)

const CSeq_feat & GetMappedFeature(void) const

Feature mapped to the master sequence.

SAnnotSelector & SetFeatSubtype(TFeatSubtype subtype)

Set feature subtype (also set annotation and feat type)

bool Empty(void) const THROWS_NONE

Check if CConstRef is empty – not pointing to any object which means having a null value.

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string SizetToString(size_t value, TNumToStringFlags flags=0, int base=10)

Convert size_t to string.

static const string BoolToString(bool value)

Convert bool to string.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static string & ToLower(string &str)

Convert string to lower case – string& version.

static const char label[]

void SetFrom(TFrom value)

Assign a value to From data member.

void SetTo(TTo value)

Assign a value to To data member.

const TTag & GetTag(void) const

Get the Tag member data.

bool IsSetTag(void) const

appropriate tag Check if a value has been assigned to Tag data member.

Tdata & Set(void)

Assign a value to data member.

const TData & GetData(void) const

Get the Data member data.

void SetData(TData &value)

Assign a value to Data data member.

list< CRef< CSeq_feat > > TFtable

for(len=0;yy_str[len];++len)

void GetSubtypesForType(set< objects::CSeqFeatData::ESubtype > &subtypes, objects::CSeqFeatData::E_Choice feat)

constexpr bool empty(list< Ts... >) noexcept

const struct ncbi::grid::netcache::search::fields::SIZE size

vector< SFeatBatchJobRequest > TFeatBatchJobRequests

EVT_MENU_RANGE(MID_SHOW_TITLES, MID_HIDE_TITLES, ViewerWindowBase::OnTitleView) EVT_MENU_RANGE(MID_ENABLE_EDIT

static SLJIT_INLINE sljit_ins or(sljit_gpr dst, sljit_gpr src)

A help struct for storing information about a icon.

bool operator()(CRef< CSeqGlyph > o1, CRef< CSeqGlyph > o2)

void UseDefaultMarginWidth(wxMenu &menu)

Using default menu item margin width.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4