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NCBI C++ ToolKit: include/gui/widgets/seq_graphic/gene_model_group.hpp Source File

(

layout_only);

objects::CSeq_loc&

()

;

SetShowGene(

flag);

HideGeneAndLabel();

()

;

x_ShowGeneLabel()

;

fLabel_ParentLabel = 1 << 0,

fLabel_FeatNum = 1 << 1,

fLabel_Both = fLabel_ParentLabel | fLabel_FeatNum

(

layout_only);

objects::CSeq_loc&

()

;

SetLabelType(FLabelType

);

SetFirstIsParent();

isRmtBased()

;

SetShowLabel(

show_label =

);

()

;

x_ShowLabel()

;

x_LabelFirst()

;

x_DrawLabels(

& base,

draw_left=

,

draw_right=

)

;

x_DrawChildrenOnParent(

& base)

;

x_DrawFeatureBar(

& base)

;

x_CalcIntervals();

x_GetUniqueLabel(

&

)

;

x_AddFeatHTMLActiveArea(TAreaVector* p_areas,

* feat,

merged_feats_count = 0)

;

x_AreAllFeaturesOnSameStrand()

;

m_ShowLabel =

;

CFeatureParams: the data structure holding feature rendering parameters.

CGeneGroup is a subclass of CLayoutGroup contains gene, RNA, cds, and Exon features.

@ eGene_Shown

show gene bar

@ eGene_ShowLabelOnly

hide gene bar, but show label with bar space

@ eGene_Hidden

hide gene bar and gene label completely

virtual ~CGeneGroup(void)

void HideGeneAndLabel()

CGeneGroup inline methods.

CLayoutGroup is a container of CSeqGlyphs (layout objects).

void SetLayoutPolicy(ILayoutPolicy *policy)

Set policy on how to deploy the layout of its children.

void SetConfig(const CBoundaryParams *conf)

Set composition boundary parameters.

void PushBack(CSeqGlyph *obj)

Append a layout object to the end.

TObjectList & SetChildren()

virtual void x_UpdateBoundingBox()

Update the bounding box assuming children's sizes are fixed if any.

const TObjectList & GetChildren() const

CLayoutGroup inline methods.

virtual bool Accept(IGlyphVisitor *visitor)

Interface for accepting an IGlyphVisitor.

virtual void GetHTMLActiveAreas(TAreaVector *p_areas) const

Get html active areas.

virtual void Update(bool layout_only)

Update content and layout including the bounding box.

virtual void x_Draw() const

The default renderer for this layout object.

virtual bool Intersects(const TModelRect &rect, TConstObjects &objs) const

Intersect testing.

virtual CRef< CSeqGlyph > HitTest(const TModelPoint &p)

Hit testing.

CLinkedFeatsGroup is a container class contains related features.

CRef< objects::CSeq_loc > m_Location

just for satisfy IObjectBasedGlyph interface.

TCounts m_IntCounts

Shall have the same size as m_Intervals.

CConstRef< CFeatGlyph > m_ParentFeat

CLayoutGroup & SetGroup()

const ILayoutPolicy::TObjectList & GetChildren() const

CLinkedFeatsGroup inline methods.

CConstRef< CFeatGlyph > GetParentFeat() const

virtual ~CLinkedFeatsGroup(void)

virtual void x_DrawHighlight() const

override x_DrawHighlight() to do nothing.

void SetShowLabel(bool show_label=true)

ILayoutPolicy::TObjectList & SetChildren()

bool m_FirstIsParent

The first feature is the parent feature.

void PushBack(CSeqGlyph *obj)

void SetConfig(const CFeatureParams *conf)

void SetLabelType(FLabelType type)

void SetParentFeat(const CFeatGlyph *feat)

CConstRef< CFeatureParams > m_Config

settings for rendering merged feature bar.

void SetLayoutPolicy(ILayoutPolicy *policy)

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

virtual bool IsClickable() const

Query if this glyph is clickable.

virtual void GetTooltip(const TModelPoint &, ITooltipFormatter &tt, string &t_title) const

Get the tooltip if available.

virtual bool NeedTooltip(const TModelPoint &, ITooltipFormatter &, string &) const

Check if need to show tooltip.

virtual TSeqRange GetRange(void) const

get the total range of this object.

virtual bool SetSelected(bool flag)

Select or deselect this glyph.

Visitor interface for applying any potential actions or algorithms.

class ILayoutPolicy defines the abstract interface required for generating layout based on a set of g...

list< CRef< CSeqGlyph > > TObjectList

virtual const TIntervals & GetIntervals(void) const =0

access sub-intervals (if any).

virtual CConstRef< CObject > GetObject(TSeqPos pos) const =0

access our core component - we wrap an object(s) of some sort.

virtual const objects::CSeq_loc & GetLocation(void) const =0

access the position of this object.

virtual string GetSignature() const =0

return signature for this glyph.

virtual bool HasObject(CConstRef< CObject > obj) const =0

check if the wrapped object(s) is the one.

vector< TSeqRange > TIntervals

vector< CConstRef< CObject > > GetObjects(CSeq_entry_Handle seh, const string &field, CFieldNamePanel::EFieldType field_type, int subtype, const string &ncRNA_class, CConstRef< objects::CSeq_submit > submit, CRef< CEditingActionConstraint > constraint, vector< CSeq_entry_Handle > *descr_context=nullptr)

unsigned int TSeqPos

Type for sequence locations and lengths.

vector< CConstRef< CObject > > TConstObjects

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT

static const char label[]

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