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NCBI C++ ToolKit: src/gui/widgets/seq_graphic/gene_model_config.cpp Source File

*

=

;

(iter != sm_StyleMap.end()) {

(iter = sm_StyleMap.begin(); iter != sm_StyleMap.end(); ++iter) {

(iter->second == style) {

(iter = sm_OptionMap.begin(); iter != sm_OptionMap.end(); ++iter) {

(iter->second ==

) {

(iter != sm_OptionMap.end()) {

& reg_path,

& profile)

,

,

(0.0, 0.6f, 0.0f, 0.1f),

& reg_path,

& profile)

,

,

(0.0, 0.6f, 0.0f, 0.1f),

& reg_path,

& profile)

<<

<< iter->first <<

<< iter->second);

(

<<

<< iter->first <<

<< iter->second);

( !preset_style.empty() ) {

settings[

] = preset_style;

CRgbaColor m_SeqProtMismatch

mismatched sequence color.

bool m_Dirty

dirty flag indicating any setting changed

CGlTextureFont m_ProdFont

CRgbaColor m_LabelProtProd

protein product label color.

CRgbaColor m_SeqProtTrans

translated sequence color.

CRgbaColor m_fgProtProd

protein product frorground color.

CRgbaColor m_SeqProt

sequence color.

CRgbaColor m_bgProtProd

protein product background color.

CGlTextureFont m_TransFont

bool m_CCDSOnly

Show only CCDS variants.

bool m_ShowCDSProductFeats

CDS associated protein features.

bool m_ShowGeneProducts

feature histogram on a gene.

bool m_ShowNtRuler

Show nucleotide ruler.

EMergeStyle m_MergeStyle

the way on how to merge CDSs and RNAs.

static ERenderingOption OptionStrToValue(const string &option)

static const string & OptionValueToStr(CGeneModelConfig::ERenderingOption option)

static EMergeStyle StyleStrToValue(const string &style)

bool m_ShowAaRuler

Show protein ruler.

bool m_SelectOnly

Show only Select/MANE variants.

void SaveSettings(CConstRef< CSeqGraphicConfig > g_conf, const string &reg_path, const string &profile) const

void UpdateSettings(const CSGConfigUtils::TKeyValuePairs &settings)

bool m_HideNonCoding

Hide transcripts without associated CDS.

void LoadSettingsPartial(const string &reg_path, const string &profile)

void LoadSettings(CConstRef< CSeqGraphicConfig > g_conf, const string &reg_path, const string &profile)

bool m_ShowVDJCs

show VDJ_segments and C_region

CRef< CBoundaryParams > m_GeneBoxConfig

bool m_ShowHistogram

show gene distribution histogram.

ERenderingOption

rendering options on how to render features overall.

@ eOption_SingleLine

merge all RNAs and CDSs into one line

@ eOption_MergeAll

merge all RNAs and CDSs, show exons, no gene bar

@ eOption_ShowAll

show all features individually

@ eOption_MergePairs

merge each RNA and CDS pair, show exons, no gene bar

@ eOption_ShowAllButGenes

show all RNAs, CDSs and exons, no gene bar

@ eOption_GeneOnly

show gene bar only

string SaveSettingsAsString(const string &preset_style) const

string m_CDSProfile

cds setting profile

static const string & StyleValueToStr(CGeneModelConfig::EMergeStyle style)

CRef< CCdsConfig > m_CdsConfig

EMergeStyle

style on how to merge RNAs and CDSs.

@ eMerge_OneLine

merge into one line

@ eMerge_Pairs

merge each transcript and CDS pair

@ eMerge_All

merge all transcripts and CDSs

@ eMerge_No

show all feature individually

bool m_ShowLMGeneLabel

landmark gene labels.

bool m_HideModels

Hide Model RefSeqs.

bool m_ShowLabel

Show labels.

static CGuiRegistry & GetInstance()

access the application-wide singleton

class CRegistryReadView provides a nested hierarchical view at a particular key.

int GetInt(const string &key, int default_val=0) const

access a named key at this level, with no recursion

bool GetBool(const string &key, bool default_val=false) const

string GetString(const string &key, const string &default_val=kEmptyStr) const

void Set(const string &key, int val)

access a named key at this level, with no recursion

class CRgbaColor provides a simple abstraction for managing colors.

static CRegistryReadView GetSizeReadView(const CGuiRegistry &reg, const string &base_key, const string &sect, const string &key, const string &def_sect="")

static void GetFont(const CRegistryReadView &view, const string &face_key, const string &size_key, CGlTextureFont &f)

static string ComposeProfileString(const TKeyValuePairs &settings)

static CRegistryReadView GetColorReadView(const CGuiRegistry &reg, const string &base_key, const string &sect, const string &key, const string &def_sect="")

Create a read view specifically for 'Color' section.

static CRegistryReadView GetReadView(const CGuiRegistry &reg, const string &base_key, const string &curr_key, const string &def_key1="", const string &def_key2="", const string &def_key3="")

read/readwrite view creation helper methods.

static CRegistryWriteView GetWriteView(CGuiRegistry &reg, const string &base_key, const string &curr_key, const string &def_key1="", const string &def_key2="", const string &def_key3="")

static CRegistryWriteView GetColorRWView(CGuiRegistry &reg, const string &base_key, const string &sect, const string &key, const string &def_sect="")

static CRegistryWriteView GetSizeRWView(CGuiRegistry &reg, const string &base_key, const string &sect, const string &key, const string &def_sect="")

static void SetColor(CRegistryWriteView &view, const string &key, const CRgbaColor &color)

static void GetColor(const CRegistryReadView &view, const string &key, CRgbaColor &color)

static void SetFont(CRegistryWriteView &view, const string &face_key, const string &size_key, const CGlTextureFont &f)

const string & GetSizeLevel() const

const string & GetColorTheme() const

class CStaticArrayMap<> provides access to a static array in much the same way as CStaticArraySet<>,...

TBase::const_iterator const_iterator

CStaticArrayMap< string, CGeneModelConfig::EMergeStyle > TStyleMap

CStaticArrayMap< string, CGeneModelConfig::ERenderingOption > TOptionMap

SStaticPair< const char *, CGeneModelConfig::EMergeStyle > TStyleStr

static const char *const kDefProfile

CGeneModelConfig implementation.

static const TOptionStr s_OptionStrs[]

SStaticPair< const char *, CGeneModelConfig::ERenderingOption > TOptionStr

static const TStyleStr s_StyleStrs[]

static const char *const kCDSKey

DEFINE_STATIC_ARRAY_MAP(TStyleMap, sm_StyleMap, s_StyleStrs)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

void Warning(CExceptionArgs_Base &args)

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool StringToBool(const CTempString str)

Convert string to bool.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static const string BoolToString(bool value)

Convert bool to string.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

Template structure SStaticPair is simlified replacement of STL pair<> Main reason of introducing this...

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