Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/genbank__gather_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/format/genbank_gather.cpp Source File

( (

.IsSegmented() &&

.HasParts()) ||

(

.IsDelta() && !

.IsDeltaLitOnly()) ) {

(

.IsProt() ) {

show_dbsource =

;

(sid.

()) {

& tsid = *

->GetTextseq_Id ();

show_dbsource =

;

(

.IsPart() ) {

vector<string>* rc =

.GetRefCache();

}

(

.DoContigStyle() ) {

*

=

;

*

=

;

bFirstWgsItem =

;

( !(*it)->GetLabel().IsStr() ) {

&

= (*it)->GetLabel().GetStr();

= &((*it)->GetData().GetStr());

= &((*it)->GetData().GetStr());

( bFirstWgsItem ) {

bFirstWgsItem =

;

*

=

;

*

=

;

( !(*it)->GetLabel().IsStr() ) {

&

= (*it)->GetLabel().GetStr();

= &((*it)->GetData().GetStr());

= &((*it)->GetData().GetStr());

*

=

;

*

=

;

( !(*it)->GetLabel().IsStr() ) {

&

= (*it)->GetLabel().GetStr();

= &((*it)->GetData().GetStr());

= &((*it)->GetData().GetStr());

CScope & GetScope(void) const

const CSeq_loc & GetLocation(void) const

bool IsModeGBench(void) const

bool HideSourceFeatures(void) const

bool IsPolicyFtp(void) const

bool ShowContigFeatures(void) const

bool IsPolicyGenomes(void) const

CRef< CGenbankBlockCallback > GetGenbankBlockCallback(void) const

static const size_t SMARTFEATLIMIT

bool ShowContigAndSeq(void) const

bool IsModeDump(void) const

bool IsModeEntrez(void) const

bool IsFormatLite(void) const

void x_GatherFeatures(void) const

void x_GatherComments(void) const

CRef< CBioseqContext > m_Current

void x_GatherReferences(void) const

void x_GatherSourceFeatures(void) const

void x_GatherSequence(void) const

void x_GatherSourceOrganism(void) const

CFlatItemOStream & ItemOS(void) const

void x_DoSingleSection(CBioseqContext &ctx) const override

void x_GatherTLS(void) const

void x_GatherWGS(void) const

void x_GatherTSA(void) const

Include a standard set of the NCBI C++ Toolkit most basic headers.

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

static DLIST_TYPE *DLIST_NAME() last(DLIST_LIST_TYPE *list)

#define FOR_EACH_SEQID_ON_BIOSEQ_HANDLE(Itr, Var)

bool s_ShowBaseCount(const CFlatFileConfig &cfg)

#define GATHER_ANCHOR(BlockType, block_str)

#define GATHER_BLOCK(BlockType, ItemClassName)

bool s_ShowContig(CBioseqContext &ctx)

#define GATHER_VIA_FUNC(BlockType, FuncName)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

CConstRef< CSeq_id > GetSeqId(void) const

CSeq_id::E_Choice Which(void) const

TSeqPos GetLength(const CSeq_id &id, CScope *scope)

Get sequence length if scope not null, else return max possible TSeqPos.

TSeqPos GetBioseqLength(void) const

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static int CompareNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive compare of a substring with another string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

static const char label[]

bool IsStr(void) const

Check if variant Str is selected.

const TStr & GetStr(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

const TType & GetType(void) const

Get the Type member data.

vector< CRef< CUser_field > > TData

bool IsSetAccession(void) const

Check if a value has been assigned to Accession data member.

bool IsWhole(void) const

Check if variant Whole is selected.

const TAccession & GetAccession(void) const

Get the Accession member data.

@ eRepr_map

ordered map of any kind

@ eRepr_virtual

no seq data

@ eTech_targeted

targeted locus sets/studies

@ eTech_tsa

transcriptome shotgun assembly

@ eTech_wgs

whole genome shotgun sequencing

@ eBiomol_transcribed_RNA

transcribed RNA other than existing classes

@ e_User

user defined object

const struct ncbi::grid::netcache::search::fields::SIZE size

#define NCBI_SEQID(Type)

@NAME Convenience macros for NCBI objects

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4