Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gc__cli_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/genomecoll/gc_cli/gc_cli.cpp Source File

;

: cgiUrl(cgi_url + (nocache ?

:

))

service_name(GetService());

cout <<

<< args.

(

) << endl;

(

<<

<< x_GetURL().c_str());

(x_GetURL().empty())

x_ConnectURL(x_GetURL());

cgiArgs.push_back(

);

cgiArgs.push_back(

);

cout <<

<<

<< request << endl;

ostringstream errStr;

*

[] = {

, 0};

cout <<

<< retVal

<<

<< exitCode << endl;

cout <<

<< outStr.str().size() << endl;

cout <<

<< endl

<< errStr.str() << endl

<<

<< endl;

discarding =

;

linesDiscarded = 0;

discarding = !( (strlen(

) == 0) || (strlen(

) == 1 &&

[0] == 13));

cout <<

<< ++linesDiscarded <<

<<

<< endl;

(

);

(

);

arg_desc->AddOptionalKey(

,

,

,

);

arg_desc->AddOptionalKey(

,

,

,

);

arg_desc->SetDependency(

, arg_desc->eExcludes,

);

arg_desc->AddOptionalKey(

,

,

,

);

arg_desc->SetDependency(

, arg_desc->eExcludes,

);

arg_desc->SetConstraint(

, &(*

,

,

,

,

,

,

,

,

));

arg_desc->AddFlag(

,

);

arg_desc->AddKey(

,

,

,

);

arg_desc->SetDependency(

, arg_desc->eExcludes,

);

arg_desc->AddFlag(

,

);

arg_desc->SetDependency(

, arg_desc->eExcludes,

);

arg_desc->AddKey(

,

,

,

);

arg_desc->SetDependency(

, arg_desc->eExcludes,

);

arg_desc->SetDependency(

, arg_desc->eExcludes,

);

arg_desc->SetDependency(

, arg_desc->eExcludes,

);

arg_desc->SetDependency(

, arg_desc->eExcludes,

);

arg_desc->SetDependency(

, arg_desc->eExcludes,

);

arg_desc->AddOptionalKey(

,

,

,

cmds_desc->SetUsageContext(GetArguments().GetProgramBasename(),

);

arg_desc->SetUsageContext(

,

);

AddCommonArgs(arg_desc.get());

cmds_desc->AddCommand(

, arg_desc.release(),

);

arg_desc->SetUsageContext(

,

);

arg_desc->AddDefaultKey(

,

,

,

,

);

AddAccRelId(arg_desc.get());

AddCommonArgs(arg_desc.get());

cmds_desc->AddCommand(

, arg_desc.release(),

);

arg_desc->SetUsageContext(

,

);

arg_desc->AddFlag(

,

);

AddSeqAcc(arg_desc.get());

AddFilterSort(arg_desc.get());

AddCommonArgs(arg_desc.get());

cmds_desc->AddCommand(

, arg_desc.release(),

);

arg_desc->SetUsageContext(

,

);

AddCommonArgs(arg_desc.get());

cmds_desc->AddCommand(

, arg_desc.release(),

);

SetupArgDescriptions(cmds_desc.release());

(args[

]) service.

(

(args[

].AsString(), args[

]));

(args[

]) service.

(

(args[

].AsString(), args[

]));

(args.

(

) && args[

])

(args[

]) service->SetTryLimit(args[

].AsInteger());

RunWithService(*service, args, ostr);

desc->

() &&

list< CRef<CSeqdesc> >&

= desc->

().Set();

list<string>

(

& ids)

list<string> id_list;

list<string> accessions;

(line.empty() || line[0] ==

) {

list<string> tlst=

(line);

accessions.splice(accessions.end(),tlst);

args[

].HasValue() ?

(args[

].AsString()) :

args[

].HasValue() ?

(args[

].AsInputFile()) :

args[

].HasValue() ?

(args[

].AsString()) :

args[

].HasValue() ?

(args[

].AsInputFile()) :

(args.

() ==

)

ostr << service.

(args[

].AsString(), args[

].AsString());

(args.

() ==

)

(args[

] || args[

])

(args[

] || args[

])

(

<<

);

(args.

() ==

)

list<string> filter_s;

filter = accumulate(filter_s.begin(), filter_s.end(), 0, [](

acc,

&

)

return acc | ENUM_METHOD_NAME(EGCClient_GetAssemblyBySequenceFilter)()->FindValue(f);

with_roles = args[

];

(!seqlist.empty()){

(args.

() ==

)

(

<<

<< ex.

());

(

argc,

* argv[])

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

void remove_if(Container &c, Predicate *__pred)

int RunWithService(CGenomicCollectionsService &service, const CArgs &args, CNcbiOstream &ostr)

virtual int Run(void)

Run the application.

virtual void Init(void)

Initialize the application.

CCommandArgDescriptions –.

virtual void Ask(const CGCClientRequest &request, CGCClientResponse &reply)

void SkipHeader(istream &is)

CDirectCGIExec(const string &cgi_path, bool nocache)

CGencollService(const CArgs &args)

CGencollService(const string &cgi_url, bool nocache)

virtual string x_GetURL()

CGencollService(bool nocache)

virtual void x_Connect()

These run with m_Mutex already acquired.

CRef< CGCClient_EquivalentAssemblies > GetEquivalentAssemblies(const string &acc, int equivalency)

static void AddArguments(CArgDescriptions &arg_desc)

CRef< CGCClient_AssembliesForSequences > FindAssembliesBySequences(const string &sequence_acc, int filter, CGCClient_GetAssemblyBySequenceRequest::ESort sort=CGCClient_GetAssemblyBySequenceRequest::eSort_default, bool with_roles=false)

Find assemblies by sequence accession.

CRef< CGC_Assembly > GetAssembly(const string &acc, const string &mode)

CRef< CGCClient_AssemblyInfo > FindOneAssemblyBySequences(const string &sequence_acc, int filter, CGCClient_GetAssemblyBySequenceRequest::ESort sort=CGCClient_GetAssemblyBySequenceRequest::eSort_default)

Find assembly by sequence accession.

string ValidateChrType(const string &chrType, const string &chrLoc)

static CNcbiApplication * Instance(void)

Singleton method.

std::ofstream out("events_result.xml")

main entry point for tests

static CGC_AssemblyDesc * GetAssebmlyDesc(CRef< CGC_Assembly > &assembly)

static list< string > GetAccessions(const CArgs &args)

static list< string > GetReleaseIds(const CArgs &args)

static list< string > GetIDs(const string &ids)

static list< string > GetIDsFromFile(CNcbiIstream &istr)

int main(int argc, const char *argv[])

static CRef< CGC_Assembly > RemoveVersions(CRef< CGC_Assembly > assembly)

static bool isVersionsObject(CRef< CSeqdesc > desc)

User-defined methods of the data storage class.

int AppMain(int argc, const char *const *argv, const char *const *envp=0, EAppDiagStream diag=eDS_Default, const char *conf=NcbiEmptyCStr, const string &name=NcbiEmptyString)

Main function (entry point) for the NCBI application.

bool Exist(const string &name) const

Check existence of argument description.

string GetCommand(void) const

Get current command.

@ eInputFile

Name of file (must exist and be readable)

@ eString

An arbitrary string.

@ eOutputFile

Name of file (must be writable)

@ eInteger

Convertible into an integer number (int or Int8)

CDiagContext & GetDiagContext(void)

Get diag context instance.

#define ERR_POST(message)

Error posting with file, line number information but without error codes.

static void SetOldPostFormat(bool value)

Set old/new format flag.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

void Info(CExceptionArgs_Base &args)

#define MSerial_AsnBinary

#define ENUM_METHOD_NAME(EnumName)

virtual void x_Connect(void) override

#define MSerial_AsnText

I/O stream manipulators –.

void Reset(void)

Reset reference object.

EFinish

ExecWait return code.

static EFinish ExecWait(const string &cmd, const vector< string > &args, CNcbiIstream &in, CNcbiOstream &out, CNcbiOstream &err, int &exit_code, const string &current_dir=kEmptyStr, const char *const envp[]=0, IProcessWatcher *watcher=0, const STimeout *kill_timeout=0, size_t pipe_size=0)

Execute a command with a vector of arguments, and wait for its completion.

@ eDone

Process finished normally.

CNcbiIstream & NcbiGetlineEOL(CNcbiIstream &is, string &str, string::size_type *count=NULL)

Read from "is" to "str" the next line (taking into account platform specifics of End-of-Line)

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

IO_PREFIX::istream CNcbiIstream

Portable alias for istream.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static SIZE_TYPE FindNoCase(const CTempString str, const CTempString pattern, SIZE_TYPE start, SIZE_TYPE end, EOccurrence which=eFirst)

Find the pattern in the specified range of a string using a case insensitive search.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

static string & ToUpper(string &str)

Convert string to upper case – string& version.

@ fSplit_Tokenize

All delimiters are merged and trimmed, to get non-empty tokens only.

void Run(void)

Enter the main loop.

bool IsSetValue(const string &name) const

Check if an argument with the given name exists.

const string & GetValue(const string &name, bool *is_found=0) const

Get value for the given name.

bool IsStr(void) const

Check if variant Str is selected.

bool IsSetType(void) const

type of object within class Check if a value has been assigned to Type data member.

const TStr & GetStr(void) const

Get the variant data.

const TType & GetType(void) const

Get the Type member data.

const TUnit & GetUnit(void) const

Get the variant data.

void SetDesc(TDesc &value)

Assign a value to Desc data member.

bool IsSetDesc(void) const

descriptors live in a shared data block Check if a value has been assigned to Desc data member.

bool IsAssembly_set(void) const

Check if variant Assembly_set is selected.

bool CanGetDescr(void) const

Check if it is safe to call GetDescr method.

void SetDesc(TDesc &value)

Assign a value to Desc data member.

const TAssembly_set & GetAssembly_set(void) const

Get the variant data.

bool IsSetDesc(void) const

descriptors live in a shared data block Check if a value has been assigned to Desc data member.

TUnit & SetUnit(void)

Select the variant.

bool IsUnit(void) const

Check if variant Unit is selected.

TAssembly_set & SetAssembly_set(void)

Select the variant.

void SetDescr(TDescr &value)

Assign a value to Descr data member.

const TUser & GetUser(void) const

Get the variant data.

bool IsUser(void) const

Check if variant User is selected.

constexpr auto sort(_Init &&init)

Magic spell ;-) needed for some weird compilers... very empiric.

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

#define GetArgs

Avoid preprocessor name clash with the NCBI C Toolkit.

Defines command line argument related classes.

Defines unified interface to application:

std::istream & in(std::istream &in_, double &x_)

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4