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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gc__assembly__parser_8hpp_source.html below:

NCBI C++ ToolKit: include/objmgr/gc_assembly_parser.hpp Source File

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1 #ifndef OBJMGR_GC_ASSEMBLY_PARSER__HPP 2 #define OBJMGR_GC_ASSEMBLY_PARSER__HPP 71 

fIgnoreLocalIds = 1 << 0,

73 

fIgnoreExternalIds = 1 << 1,

75 

fIgnoreAnnots = 1 << 2,

77 

fIgnoreDescr = 1 << 3,

79 

fSkipDuplicates = 1 << 4,

81

fDefault = fIgnoreLocalIds | fIgnoreAnnots | fIgnoreDescr | fSkipDuplicates

101  void

x_ParseGCAssembly(

const CGC_Assembly

& gc_assembly,

108  const

TSeqIds& synonyms,

130  virtual const char

* GetErrCodeString(

void

)

const override

;

User-defined methods of the data storage class.

Seq-loc and seq-align mapper exceptions.

EErrCode

Error types that an application can generate.

CRef< CSeq_entry > GetTSE(void) const

Create seq-entry with all parsed sequences, annotations etc.

const TSeqIds & GetTopLevelSequences(void) const

Get seq-ids for all top-level sequences in the assembly.

FParserFlags

Parser options.

set< CSeq_id_Handle > TSeqIds

NCBI_EXCEPTION_DEFAULT(CAssemblyParserException, CException)

@ eUnsupported

Unsupported type/flag.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJMGR_EXPORT

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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