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static void s_GBSeqStringCleanup (string &str, bool location=false) static string s_CombineStrings (const string &spaces, const string &tag, const string &value) static string s_CombineStrings (const string &spaces, const string &tag, int value) static string s_AddAttribute (const string &spaces, const string &tag, const string &attribute, const string &value) static string s_OpenTag (const string &spaces, const string &tag) static string s_OpenTagNoNewline (const string &spaces, const string &tag) static string s_CloseTag (const string &spaces, const string &tag) CGBSeq::TStrandedness s_GBSeqStrandedness (CSeq_inst::TStrand strand, CMolInfo::TBiomol eBiomol) CGBSeq::TMoltype s_GBSeqMoltype (CMolInfo::TBiomol biomol) CGBSeq::TTopology s_GBSeqTopology (CSeq_inst::TTopology topology) string s_GetDate (const CBioseq_Handle &bsh, CSeqdesc::E_Choice choice) static bool s_IsSuccessor (const string &acc, const string &prev) ◆ s_AddAttribute() ◆ s_CloseTag() ◆ s_CombineStrings() [1/2]Definition at line 135 of file gbseq_formatter.cpp.
References tag, rapidjson::value, and NStr::XmlEncode().
Referenced by CGBSeqFormatter::EndSection(), CGBSeqFormatter::FormatAccession(), CGBSeqFormatter::FormatContig(), CGBSeqFormatter::FormatDefline(), CGBSeqFormatter::FormatFeature(), CGBSeqFormatter::FormatGap(), CGBSeqFormatter::FormatGenomeProject(), CGBSeqFormatter::FormatKeywords(), CGBSeqFormatter::FormatLocus(), CGBSeqFormatter::FormatReference(), CGBSeqFormatter::FormatSequence(), CGBSeqFormatter::FormatSource(), CGBSeqFormatter::FormatVersion(), and CGBSeqFormatter::x_FormatAltSeq().
◆ s_CombineStrings() [2/2] ◆ s_GBSeqMoltype() ◆ s_GBSeqStrandedness()Definition at line 299 of file gbseq_formatter.cpp.
References CMolInfo_Base::eBiomol_genomic, CMolInfo_Base::eBiomol_peptide, map_checker< Container >::end(), ENUM_METHOD_NAME, CSeq_inst_Base::eStrand_ds, CSeq_inst_Base::eStrand_mixed, CSeq_inst_Base::eStrand_not_set, CSeq_inst_Base::eStrand_other, CSeq_inst_Base::eStrand_ss, NStr::Find(), map_checker< Container >::find(), kEmptyStr, NPOS, and CEnumeratedTypeValues::ValueToName().
Referenced by CGBSeqFormatter::FormatLocus().
◆ s_GBSeqStringCleanup() ◆ s_GBSeqTopology() ◆ s_GetDate() ◆ s_IsSuccessor() ◆ s_OpenTag() ◆ s_OpenTagNoNewline()RetroSearch is an open source project built by @garambo | Open a GitHub Issue
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