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NCBI C++ ToolKit: src/gui/widgets/loaders/gb_object_loader.cpp Source File

: m_Ids(ids), m_NAs(NAs)

+ s +

;

(seq_id == 0 && seq_loc == 0) {

(

<<

);

(seq_loc && seq_loc->

()) {

(ival.

() < bioseqLength) {

(ival.

() > bioseqLength)

ival.

(bioseqLength);

ival.

(bioseqLength);

(

exception& e) {

(

& na :

) {

(

gi : gis) {

(

exception& e) {

void x_ShowErrorsDlg(const wxString &title)

void x_UpdateHTMLResults(const wxString &object, objects::ILineErrorListener *errCont, const string &exception="", const string &error_msg="", const wxString &objectName=wxT("File:"))

Interface for testing cancellation request in a long lasting operation.

vector< SObject > TObjects

unsigned int TSeqPos

Type for sequence locations and lengths.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

const string & GetMsg(void) const

Get message string.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

static void GetAllGIs(const TNAA &naa, EEntrezDB eedb, TGis &gis, EUidsSource *pUidsSource=NULL)

EEntrezDB

eutils databases that can be used

@ EEDB_All

try both nucleotide and protein databases, merge results

CGBObjectLoader(const vector< CRef< CObject > > &ids, const vector< string > &NAs)

virtual bool PreExecute()

virtual bool PostExecute()

vector< CRef< CObject > > m_Ids

virtual TObjects & GetObjects()

virtual bool Execute(ICanceled &canceled)

virtual string GetDescription() const

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

string GetSeqIdString(bool with_version=false) const

Return seqid string with optional version for text seqid type.

const CSeq_id * GetId(void) const

Get the id of the location return NULL if has multiple ids or no id at all.

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

void AddDefaults(TPriority pri=kPriority_Default)

Add default data loaders from object manager.

TSeqPos GetBioseqLength(void) const

SAnnotSelector & IncludeNamedAnnotAccession(const string &acc, int zoom_level=0)

SAnnotSelector & AddNamedAnnots(const CAnnotName &name)

Add named annot to set of annots names to look for.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual bool IsCanceled(void) const =0

static enable_if< is_arithmetic< TNumeric >::value||is_convertible< TNumeric, Int8 >::value, string >::type NumericToString(TNumeric value, TNumToStringFlags flags=0, int base=10)

Convert numeric value to string.

static const char label[]

void SetTo(TTo value)

Assign a value to To data member.

TFrom GetFrom(void) const

Get the From member data.

void SetFrom(TFrom value)

Assign a value to From data member.

TGi & SetGi(void)

Select the variant.

TTo GetTo(void) const

Get the To member data.

bool IsInt(void) const

Check if variant Int is selected.

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