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NCBI C++ ToolKit: src/gui/widgets/loaders/gb_load_option_panel.cpp Source File

wxPanel::Create( parent,

, pos,

, style );

GetSizer()->SetSizeHints(

);

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemPanel1->SetSizer(itemBoxSizer2);

wxStaticText* itemStaticText3 =

wxStaticText( itemPanel1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer2->Add(itemStaticText3, 0, wxALIGN_LEFT|wxALL, 5);

wxStaticText* itemStaticText4 =

wxStaticText( itemPanel1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer2->Add(itemStaticText4, 0, wxGROW|wxALL, 5);

=

( itemPanel1,

, wxEmptyString, wxDefaultPosition, itemPanel1->ConvertDialogToPixels(wxSize(250, 100)), wxWANTS_CHARS|wxTE_RICH2|wxTE_MULTILINE );

itemBoxSizer2->Add(

, 1, wxGROW|wxALL, 5);

wxStaticText* itemStaticText6 =

wxStaticText( itemPanel1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer2->Add(itemStaticText6, 0, wxALIGN_LEFT|wxALL, 5);

=

( itemPanel1,

, wxDefaultPosition, itemPanel1->ConvertDialogToPixels(wxSize(250, 100)), wxHW_SCROLLBAR_AUTO|wxSUNKEN_BORDER|wxHSCROLL|wxVSCROLL );

itemBoxSizer2->Add(

, 1, wxGROW|wxALL, 5);

.SetBackgroundColour(wxColour(255, 200, 200));

wxStringOutputStream strstrm;

wxTextOutputStream os(strstrm);

os <<

(

);

( TMap::const_reverse_iterator it =

.rbegin(); it !=

.rend(); ++it) {

time_t

= it->first;

acc = it->second.GetAccession();

os <<

(

) << acc <<

(

) << acc

<<

(

)

<<

(

)

os <<

(

);

->SetBackgroundColour(wxSystemSettings::GetColour(wxSYS_COLOUR_WINDOW));

wxOK | wxICON_ERROR,

);

wxOK | wxICON_ERROR,

);

wxYES_NO | wxICON_EXCLAMATION,

);

*

=

;

from = NStr::StringToNumeric<CSeq_interval::TFrom>(pos.front()) - 1;

to = NStr::StringToNumeric<CSeq_interval::TTo>(pos.back()) - 1;

vector<string> splits;

vector<SIZE_TYPE> split_pos;

= splits.size();

tokens.resize(

);

(

= 0;

<

;

++) {

tokens[

].m_Pos = (

)split_pos[

];

tokens[

].m_Size = (

)splits[

].

();

tokens[

].m_Valid =

;

regexGenAcc(

);

processed = 0;

(; processed <

; processed++) {

s_id = splits[processed];

(na.find(

) == string::npos)

.push_back(na);

tokens[processed].m_Valid =

;

pos = s_id.find(

);

seq_id_valid =

;

(pos != string::npos) {

range = s_id.substr(pos + 1);

s_id = s_id.substr(0, pos);

seq_id_valid = re.

(range);

seq_id_valid =

;

ival.

().Assign(*id_copy);

seq_id_valid =

;

seq_id_valid =

;

(!regexGenAcc.

(s_id))

seq_id_valid =

;

seq_id_valid =

;

tokens[processed].m_GenomicAccession =

;

tokens[processed].m_Valid = seq_id_valid;

(

)processed;

fReentry =

;

vector<Token> tokens;

},

(

));

restoreFocus = (wxWindow::FindFocus() ==

);

(

= 0;

< (size_t)processed;

++) {

(!tokens[

].m_Valid) {

start = tokens[

].m_Pos;

end = start + tokens[

].m_Size;

(valid_start < start)

=

.substr(tokens[

].m_Pos, tokens[

].m_Size);

start = tokens[processed].m_Pos;

end = (

)

.size();

(valid_start < start)

(valid_start < (

)

.size())

wxHtmlLinkInfo

=

.GetLinkInfo();

vector<string> tokens;

(vector<string>::iterator it = tokens.begin(); it != tokens.end(); ++it) {

tokens.push_back(acc);

(!

.empty())

*

=

;

(encoded.size() < 10000) {

vector<string> values;

time(it->first);

accession = it->second.GetAccession();

values.push_back(s_time);

values.push_back(accession);

vector<string> values;

(

= 0;

+ 1 < values.size() ; ) {

s_time = values[

++];

accession = values[

++];

}

(

exception&) {

fReentry =

;

std::invoke_result< _Fty, ICanceled & >::type GUI_AsyncExec(_Fty &&_Fnarg, const wxString &msg=wxT("Accessing network..."))

CRegistryWriteView GetWriteView(const string &section)

get a read-write view at a particular level.

static CGuiRegistry & GetInstance()

access the application-wide singleton

CRegistryReadView GetReadView(const string &section) const

get a read-only view at a particular level.

class CRegistryReadView provides a nested hierarchical view at a particular key.

string GetString(const string &key, const string &default_val=kEmptyStr) const

void GetStringVec(const string &key, vector< string > &val) const

void Set(const string &key, int val)

access a named key at this level, with no recursion

CRichTextCtrl - a wrapper for wxRichTextCtrl that handles additional keyboard events (such as Clipboa...

CAccDescriptor value_type

const TTimeToTMap & GetMap() const

void Add(T elem, time_t time=0)

Interface for testing cancellation request in a long lasting operation.

const char * sRangeRegexp

static string sFormatTimePeriod(CTime &t_now, CTime &t_before)

#define INVALID_ELEMS_MSG

static string sDelim(" \t,;\n\r")

static bool sParseRange(CSeq_interval &ival, const string &range)

static const char * kIdsInputTag

static const char * kMRUTag

static const char * kPanelTag

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

static bool IsNAA(const string &annot, bool isStrict=false)

check if a given annotation is a named annotation accession[.version][number] when isSctrict == false...

void SaveMruAccessions(const string &regPath)

vector< string > m_ValidTokens

vector< CRef< CObject > > TIdsVec

void SaveSettings(const string &regPath)

void SetInput(const string &input)

static bool ShowToolTips()

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

void OnRecentAccClicked(wxHtmlLinkEvent &event)

wxEVT_COMMAND_HTML_LINK_CLICKED event handler for ID_HTMLWINDOW2

vector< string > m_GenomicAccessions

~CGenBankLoadOptionPanel()

CRichTextCtrl * m_AccInput

void OnAccInputUpdated(wxCommandEvent &event)

wxEVT_COMMAND_TEXT_UPDATED event handler for ID_ACC_INPUT

int x_ProccessText(const string &text, vector< Token > &tokens, ICanceled &canceled)

CGenBankLoadOptionPanel()

CwxHtmlWindow * m_MRUWindow

bool Create(wxWindow *parent, wxWindowID id=ID_CGENBANKLOADOPTIONPANEL, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(266, 184), long style=wxTAB_TRAVERSAL)

void LoadSettings(const string &regPath)

static EAccessionInfo IdentifyAccession(const CTempString &accession, TParseFlags flags=fParse_AnyRaw)

Deduces information from a bare accession a la WHICH_db_accession; may report false negatives on prop...

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Optimized implementation of CSerialObject::Assign, which is not so efficient.

CConstRef< CSeq_id > GetSeqId(void) const

EAccessionInfo

For IdentifyAccession (below)

static E_Choice GetAccType(EAccessionInfo info)

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

void AddDefaults(TPriority pri=kPriority_Default)

Add default data loaders from object manager.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

bool IsMatch(CTempString str, TMatch flags=fMatch_default)

Check existence substring which match a specified pattern.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual bool IsCanceled(void) const =0

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static string URLDecode(const CTempString str, EUrlDecode flag=eUrlDec_All)

URL-decode string.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static string Join(const TContainer &arr, const CTempString &delim)

Join strings using the specified delimiter.

static string & ReplaceInPlace(string &src, const string &search, const string &replace, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

static string & ToUpper(string &str)

Convert string to upper case – string& version.

static string URLEncode(const CTempString str, EUrlEncode flag=eUrlEnc_SkipMarkChars)

URL-encode string.

@ fSplit_Tokenize

All delimiters are merged and trimmed, to get non-empty tokens only.

CTime & ToLocalTime(void)

Convert the time into local time.

string AsString(const CTimeFormat &format=kEmptyStr, TSeconds out_tz=eCurrentTimeZone) const

Transform time to string.

time_t GetTimeT(void) const

Get time in time_t format.

static CTimeFormat GetPredefined(EPredefined fmt, TFlags flags=fDefault)

Get predefined format.

@ eCurrent

Use current time. See also CCurrentTime.

@ eISO8601_DateTimeSec

Y-M-DTh:m:s (eg 1997-07-16T19:20:30)

void SetTo(TTo value)

Assign a value to To data member.

void SetId(TId &value)

Assign a value to Id data member.

void SetFrom(TFrom value)

Assign a value to From data member.

E_Choice

Choice variants.

unsigned int

A callback function used to compare two keys in a database.

The blob sat and sat key Both must be positive integers</td > n< td > Non empty string The interpretation of the blob id depends on a processor Cassandra n processor expects the following format

static void text(MDB_val *v)

const struct ncbi::grid::netcache::search::fields::SIZE size

const GenericPointer< typename T::ValueType > T2 value

C++ wrappers for the Perl-compatible regular expression (PCRE) library.

wxString ToWxString(const string &s)

string ToStdString(const wxString &s)

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