Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/gb__ascii_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/flatfile/gb_ascii.cpp Source File

(entry.

.

+ div_shift);

}

(condiv && ibp->

==

&& ibp->

==

) {

allow_crossdb_featloc;

(! dbp || ! dbp->

.

)

(q = p,

= p; *q !=

; q++)

(*q !=

&& *q !=

&& *q !=

)

(q = p; *q !=

; q++)

((q[0] ==

&& q[1] ==

) || (q[0] ==

&& q[1] ==

) ||

(q[0] ==

&& q[1] ==

))

(loc->

()) {

* bptr = entry.

.

;

(!

.empty()) {

c =

.back();

(c ==

|| c ==

|| c ==

|| c ==

|| c ==

)

pat_ref =

;

est_kwd =

;

sts_kwd =

;

gss_kwd =

;

htc_kwd =

;

fli_kwd =

;

wgs_kwd =

;

tpa_kwd =

;

tsa_kwd =

;

tls_kwd =

;

env_kwd =

;

mga_kwd =

;

(!

.empty()) {

(

.back() ==

) {

(

.size() >= 2 && *(

.end() - 2) ==

)

gbb->SetSource(std::move(

));

gbb->SetKeywords().swap(ibp->

);

(

&

: gbb->GetKeywords()) {

(

, &est_kwd, &sts_kwd, &gss_kwd, &htc_kwd, &fli_kwd, &wgs_kwd, &tpa_kwd, &env_kwd, &mga_kwd, &tsa_kwd, &tls_kwd);

ptr =

(string_view(bptr, eptr),

);

gbb->SetOrigin(

(bptr, eptr));

div_str(bptr, bptr + 3);

gbb->SetDiv(div_str);

gbb->SetDiv(

);

* p_div = gbb->GetDiv().c_str();

(!

(gbb->GetKeywords())) {

(ibp->

==

) {

}

(ibp->

) {

}

(ibp->

) {

(ibp->

==

) {

}

(ibp->

) {

(ibp->

==

) {

}

(ibp->

) {

(

== 2 && ibp->

> 0 && env_kwd)

(

,

,

);

((

== 2 && wgs_kwd && tpa_kwd) ||

(

== 2 && tsa_kwd && tpa_kwd) ||

env_kwd && tpa_kwd)) {

}

(

!= 2 || env_kwd ==

||

(est_kwd ==

&& gss_kwd ==

&& wgs_kwd ==

)) {

ibp->

==

|| env_kwd ==

) {

(env_kwd ==

&& tpa_kwd ==

)) {

(

,

,

);

wgs_kwd ==

&& tpa_kwd ==

&& env_kwd ==

) {

(! est_kwd && kw.find(

) != string::npos) {

(! sts_kwd && kw.find(

) != string::npos) {

p_div = gbb->GetDiv();

(ibp->

, pat_ref, est_kwd, sts_kwd, gss_kwd, if_cds, p_div, &tech, ibp->

, pp->

, drop);

}

(gbb->GetDiv() ==

) {

gbb->IsSetDiv() && gbb->GetDiv() !=

) {

is_htc_div = gbb->IsSetDiv() && gbb->GetDiv() ==

,

has_htc =

(gbb->GetKeywords());

(is_htc_div && ! has_htc) {

(! is_htc_div && has_htc) {

(*p ==

|| *p ==

)

(

(p,

, 12))

(gbb->IsSetDiv()) {

(gbb->GetDiv() ==

) {

}

(gbb->GetDiv() ==

) {

}

(gbb->GetDiv() ==

) {

}

(gbb->GetDiv() ==

) {

}

(gbb->GetDiv() ==

&& bio_src && bio_src->

() &&

(

& subtype : bio_src->

()) {

(!

->IsSetSubtype())

}

(gbb->IsSetDiv() &&

ret.

(gbb.Release());

* molstr =

;

mol_info->SetTechexp(

);

(mol_info->SetBiomol(), mol_info->GetTech(), molstr, pp, entry, org_ref);

mol_info->ResetBiomol();

(*bptr !=

&& *bptr !=

)

(*bptr ==

)

taxname.append(bptr, ptr);

org_ref.

().SetLineage(std::move(s));

bioseq.

().Set().push_back(descr);

res =

(string_view(line, p - line));

(q = res, p = res; *p !=

; p++)

(p = q; *p !=

&& *p !=

&& *p !=

;)

cur_field->

().SetStr(

);

field_set->

().SetFields().push_back(cur_field);

(q = p; *p >=

&& *p <=

;)

cur_field->

().SetStr(

);

field_set->

().SetFields().push_back(cur_field);

root_field->

().SetFields().push_back(cur_field);

user_obj.

().push_back(root_field);

(q = line; *q ==

|| *q ==

;)

(

= res; *q !=

;) {

(*q ==

|| *q ==

)

user_obj.

().push_back(field);

user_obj->

().SetStr(

);

(p += 12; *p ==

;)

(

= p; *p !=

&& *p !=

&& *p !=

;)

(*p ==

|| p ==

)

(seq_entry.

())

.SetStr(

);

field->

().SetStr(

);

user_obj->

().push_back(field);

field->

().SetStr(

);

user_obj->

().push_back(field);

field->

().SetStr(

);

user_obj->

().push_back(field);

descrs.push_back(descr);

(

& descr : bioseq.

().Set()) {

(descr->IsSource()) {

bio_src = &(descr->SetSource());

org_ref = &bio_src->

();

(!

.empty() &&

.front() ==

) {

(

c :

) {

bioseq.

().Set().push_back(descr);

title.starts_with(

sv)) {

(! ibp->

&& title.starts_with(

sv)) {

(! ibp->

&& title.starts_with(

sv)) {

(title.empty() || (! title.starts_with(

sv) &&

! title.starts_with(

sv) &&

! title.starts_with(

sv) &&

! title.starts_with(

sv) &&

! title.starts_with(

sv)))) {

(title.empty() || ! title.starts_with(

sv))) {

(ibp->

&& (title.empty() || ! title.starts_with(

sv))) {

(

& ref_blk : chain) {

descr->

(*pubdesc);

bioseq.

().Set().push_back(descr);

(

& ref_blk : chain) {

descr->

(*pubdesc);

bioseq.

().Set().push_back(descr);

mol_info->ResetTech();

mol_info->SetTech(tech);

(mol_info->IsSetBiomol() || mol_info->IsSetTech()) {

bioseq.

().Set().push_back(descr);

(gbbp.

()) {

(pp->

== 1 && gbbp->IsSetDiv())

bioseq.

().Set().push_back(descr);

,

(ibp->

==

) ?

:

);

(mol_info.

() && mol_info->IsSetTech() &&

(

& user_obj : user_objs) {

bioseq.

().Set().push_back(descr);

(q =

, p = q; *p !=

;) {

(*p ==

&& (p[1] ==

|| p[1] ==

))

(*p ==

|| *p ==

) {

(p++; *p ==

|| *p ==

;)

(

[0] != 0) {

bioseq.

().Set().push_back(descr);

}

(ibp->

.

> 0) {

date->

(*std_date);

bioseq.

().Set().push_back(descr);

division[3] =

;

(division, locusText.substr(64, 3).c_str());

seq_long =

;

* ptr = pEntry->mBuf.ptr;

* eptr = ptr + pEntry->mBuf.len;

(ppCurrentEntry->lc.div > -1) {

(! ibp->

.empty())

(ibp->

== 4 || ibp->

== 1 || ibp->

== 2 ||

}

(! ibp->

.empty())

pEntry->mpQscore.clear();

->SetPatent(*ibp->

);

bioseq->

().push_back(

);

}

(ibp->

) {

seq_entries.push_back(ebp->

);

(ibp->

== 1 || ibp->

== 2 || ibp->

== 4) {

(

pSeqEntry : seq_entries) {

pResult = seq_entries.front();

seq_entries.clear();

,

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

void AssemblyGapsToDelta(CBioseq &bioseq, TGapFeatsList &gf, bool *drop)

bool no_reference(const CBioseq &bioseq)

void SeqToDelta(CBioseq &bioseq, Int2 tech)

CMolInfo::TTech fta_check_con_for_wgs(CBioseq &bioseq)

bool fta_check_htg_kwds(TKeywordList &kwds, IndexblkPtr ibp, CMolInfo &mol_info)

void fta_set_molinfo_completeness(CBioseq &bioseq, const Indexblk *ibp)

void fta_add_hist(ParserPtr pp, CBioseq &bioseq, CGB_block::TExtra_accessions &extra_accs, Parser::ESource source, CSeq_id::E_Choice acctype, bool pricon, const char *acc)

bool fta_parse_tpa_tsa_block(CBioseq &bioseq, char *offset, char *acnum, Int2 vernum, size_t len, Int2 col_data, bool tpa)

Int4 fta_fix_seq_loc_id(TSeqLocList &locs, ParserPtr pp, string_view location, string_view name, bool iscon)

string GetQSFromFile(FILE *fd, const Indexblk *ibp)

bool check_cds(const DataBlk &entry, Parser::EFormat format)

void fta_create_far_fetch_policy_user_object(CBioseq &bsp, Int4 num)

void fta_tsa_tls_comment_dblink_check(const CBioseq &bioseq, bool is_tsa)

void fta_remove_cleanup_user_object(CSeq_entry &seq_entry)

bool fta_dblink_has_sra(const CRef< CUser_object > &uop)

void GapsToDelta(CBioseq &bioseq, TGapFeatsList &gf, bool *drop)

void fta_get_project_user_object(TSeqdescList &descrs, const char *offset, Parser::EFormat format, bool *drop, Parser::ESource source)

void fta_get_dblink_user_object(TSeqdescList &descrs, char *offset, size_t len, Parser::ESource source, bool *drop, CRef< CUser_object > &dbuop)

void err_install(const Indexblk *ibp, bool accver)

bool no_date(Parser::EFormat format, const TSeqdescList &descrs)

void fta_parse_structured_comment(char *str, bool &bad, TUserObjVector &objs)

void GetGenBankSubBlock(const DataBlk &entry, size_t bases)

void StripSerialNumbers(TEntryList &seq_entries)

char * GetGenBankBlock(TDataBlkList &chain, char *ptr, Int2 *retkw, char *eptr)

void AddNIDSeqId(CBioseq &bioseq, const DataBlk &entry, Int2 type, Int2 coldata, Parser::ESource source)

void fta_fix_orgref_div(const CBioseq::TAnnot &annots, COrg_ref *org_ref, CGB_block &gbb)

void DefVsHTGKeywords(CMolInfo::TTech tech, const DataBlk &entry, Int2 what, Int2 ori, bool cancelled)

unsigned char *const GetDNAConvTable()

void fta_sort_seqfeat_cit(TEntryList &seq_entries)

void PackEntries(TEntryList &seq_entries)

void fta_set_strandedness(TEntryList &seq_entries)

void CheckHTGDivision(const char *div, CMolInfo::TTech tech)

char * GetDescrComment(char *offset, size_t len, Uint2 col_data, bool is_htg, bool is_pat)

void GetSequenceOfKeywords(const DataBlk &entry, int type, Uint2 col_data, TKeywordList &keywords)

void EntryCheckDivCode(TEntryList &seq_entries, ParserPtr pp)

bool GetSeqData(ParserPtr pp, const DataBlk &entry, CBioseq &bioseq, Int4 nodetype, unsigned char *seqconv, Uint1 seq_data_type)

bool fta_EntryCheckGBBlock(TEntryList &seq_entries)

char * SrchNodeSubType(const DataBlk &entry, Int2 type, Int2 subtype, size_t *len)

unsigned char *const GetProtConvTable()

void fta_sort_descr(TEntryList &seq_entries)

void GetExtraAccession(IndexblkPtr ibp, bool allow_uwsec, Parser::ESource source, TAccessionList &accessions)

bool check_div(bool pat_acc, bool pat_ref, bool est_kwd, bool sts_kwd, bool gss_kwd, bool if_cds, string &div, CMolInfo::TTech *tech, size_t bases, Parser::ESource source, bool &drop)

CRef< CBioseq > CreateEntryBioseq(ParserPtr pp)

void ProcessCitations(TEntryList &seq_entries)

void SetToTime(const CTime &time, EPrecision prec=ePrecision_second)

void PostTotals() override

CRef< objects::CSeq_entry > xGetEntry() override

static bool IsNa(EMol mol)

CUser_field & SetString(const char *value)

EntryBlk * GetEntryData() const

struct DataBlk::@1166 mBuf

DataBlk * LoadEntry(ParserPtr pp, size_t offset, size_t len)

void g_InstantiateMissingProteins(CSeq_entry_Handle entryHandle)

void FinalCleanup(TEntryList &seq_entries)

#define ERR_SEQUENCE_BadData

#define ERR_TPA_TpaSpansMissing

#define ERR_ENTRY_LongSequence

#define ERR_FORMAT_MissingContigFeature

#define ERR_KEYWORD_ShouldNotBeTPA

#define ERR_DIVISION_BadTSADivcode

#define ERR_FORMAT_MissingSequenceData

#define ERR_DIVISION_InvalidHTCKeyword

#define ERR_KEYWORD_IllegalForCON

#define ERR_DIVISION_MissingHTGKeywords

#define ERR_QSCORE_FailedToParse

#define ERR_ENTRY_LongHTGSSequence

#define ERR_KEYWORD_MissingTSA

#define ERR_DIVISION_BadTPADivcode

#define ERR_TPA_TpaCommentMissing

#define ERR_REFERENCE_No_references

#define ERR_KEYWORD_ShouldNotBeTLS

#define ERR_ENTRY_GBBlock_not_Empty

#define ERR_KEYWORD_HTGPlusENV

#define ERR_DEFINITION_MissingTPA

#define ERR_ENTRY_Skipped

#define ERR_DEFINITION_MissingTLS

#define ERR_KEYWORD_ESTSubstring

#define ERR_KEYWORD_ConflictingKeywords

#define ERR_DIVISION_ConDivLacksContig

#define ERR_LOCATION_ContigHasNull

#define ERR_KEYWORD_ENV_NoMatchingQualifier

#define ERR_KEYWORD_ShouldNotBeTSA

#define ERR_KEYWORD_STSSubstring

#define ERR_DIVISION_UnknownDivCode

#define ERR_KEYWORD_MissingTLS

#define ERR_DEFINITION_ShouldNotBeTSA

#define ERR_DIVISION_MissingHTCKeyword

#define ERR_DIVISION_MappedtoCON

#define ERR_DIVISION_MappedtoEST

#define ERR_FORMAT_ContigWithSequenceData

#define ERR_KEYWORD_NoGeneExpressionKeywords

#define ERR_DEFINITION_MissingTSA

#define ERR_DEFINITION_ShouldNotBeTPA

#define ERR_FORMAT_MissingEnd

#define ERR_KEYWORD_MissingTPA

#define ERR_ENTRY_ParsingComplete

#define ERR_ORGANISM_NoOrganism

#define ERR_DATE_IllegalDate

#define ERR_DIVISION_HTCWrongMolType

#define ERR_KEYWORD_ShouldNotBeCAGE

#define ERR_DEFINITION_ShouldNotBeTLS

#define ERR_TSA_UnexpectedPrimaryAccession

list< CRef< objects::CSeq_entry > > TEntryList

bool QscoreToSeqAnnot(const string &qscore, CBioseq &bioseq, char *acc, Int2 ver, bool check_minmax, bool allow_na)

std::list< CRef< objects::CSeqdesc > > TSeqdescList

std::vector< CRef< objects::CUser_object > > TUserObjVector

int fta_atoi(string_view sv)

bool fta_StartsWith(const char *s1, string_view s2)

bool StringEquN(const char *s1, const char *s2, size_t n)

bool StringEqu(const char *s1, const char *s2)

void StringCpy(char *d, const char *s)

void StringNCpy(char *d, const char *s, size_t n)

size_t StringLen(const char *s)

void MemCpy(void *p, const void *q, size_t sz)

char * StringNew(size_t sz)

void FtaDeletePrefix(int prefix)

#define FtaErrPost(sev, level,...)

void fta_find_pub_explore(ParserPtr pp, TEntryList &seq_entries)

static const char * str(char *buf, int n)

bool GetGenBankInstContig(const DataBlk &entry, CBioseq &bsp, ParserPtr pp)

static CRef< CGB_block > GetGBBlock(ParserPtr pp, const DataBlk &entry, CMolInfo &mol_info, CBioSource *bio_src)

static string GetGenBankLineage(string_view sv)

static void fta_get_str_user_field(char *line, const Char *tag, CUser_object &user_obj)

static CRef< CMolInfo > GetGenBankMolInfo(ParserPtr pp, const DataBlk &entry, const COrg_ref *org_ref)

static void FakeGenBankBioSources(const DataBlk &entry, CBioseq &bioseq)

static void CheckContigEverywhere(IndexblkPtr ibp, Parser::ESource source)

static void fta_get_user_object(CSeq_entry &seq_entry, const DataBlk &entry)

static void GenBankGetDivision(char *division, Int4 div, const DataBlk &entry)

static void fta_get_user_field(char *line, const Char *tag, CUser_object &user_obj)

static void fta_get_mga_user_object(TSeqdescList &descrs, char *offset, size_t len)

static char * GBDivOffset(const DataBlk &entry, Int4 div_shift)

static bool GetGenBankInst(ParserPtr pp, const DataBlk &entry, unsigned char *dnaconv)

static void xGenBankGetDivision(char *division, Int4 div, const string &locusText)

static void GetGenBankDescr(ParserPtr pp, const DataBlk &entry, CBioseq &bioseq)

void DealWithGenes(CRef< CSeq_entry > &pEntry, ParserPtr pp)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

CBioseq_Handle AddBioseq(CBioseq &bioseq, TPriority pri=kPriority_Default, EExist action=eExist_Throw)

Add bioseq, return bioseq handle.

static CRef< CObjectManager > GetInstance(void)

Return the existing object manager or create one.

void ResetDataAndHistory(void)

Clear all information in the scope except added data loaders.

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

void Reset(void)

Reset reference object.

bool NotEmpty(void) const THROWS_NONE

Check if CRef is not empty – pointing to an object and has a non-null value.

bool Empty(void) const THROWS_NONE

Check if CRef is empty – not pointing to any object, which means having a null value.

int16_t Int2

2-byte (16-bit) signed integer

int32_t Int4

4-byte (32-bit) signed integer

char Char

Alias for char.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

@ eNocase

Case insensitive compare.

@ eCurrent

Use current time. See also CCurrentTime.

const TSubtype & GetSubtype(void) const

Get the Subtype member data.

TGenome GetGenome(void) const

Get the Genome member data.

TOrigin GetOrigin(void) const

Get the Origin member data.

bool IsSetOrg(void) const

Check if a value has been assigned to Org data member.

bool IsSetSubtype(void) const

Check if a value has been assigned to Subtype data member.

const TOrg & GetOrg(void) const

Get the Org member data.

bool IsSetOrigin(void) const

Check if a value has been assigned to Origin data member.

void SetOrg(TOrg &value)

Assign a value to Org data member.

@ eSubtype_environmental_sample

@ eOrigin_synthetic

purely synthetic

bool IsSetData(void) const

the object itself Check if a value has been assigned to Data data member.

TStd & SetStd(void)

Select the variant.

TData & SetData(void)

Assign a value to Data data member.

void SetNum(TNum value)

Assign a value to Num data member.

void SetLabel(TLabel &value)

Assign a value to Label data member.

void SetType(TType &value)

Assign a value to Type data member.

void SetData(TData &value)

Assign a value to Data data member.

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

const TMod & GetMod(void) const

Get the Mod member data.

const TDiv & GetDiv(void) const

Get the Div member data.

const TTaxname & GetTaxname(void) const

Get the Taxname member data.

bool IsSetDiv(void) const

GenBank division code Check if a value has been assigned to Div data member.

void SetTaxname(const TTaxname &value)

Assign a value to Taxname data member.

bool IsSetMod(void) const

Check if a value has been assigned to Mod data member.

bool IsSetOrgname(void) const

Check if a value has been assigned to Orgname data member.

void SetOrgname(TOrgname &value)

Assign a value to Orgname data member.

const TOrgname & GetOrgname(void) const

Get the Orgname member data.

@ eSubtype_metagenome_source

@ eSeq_code_type_iupacaa

IUPAC 1 letter amino acid code.

@ eSeq_code_type_iupacna

IUPAC 1 letter nuc acid code.

bool IsMix(void) const

Check if variant Mix is selected.

const TMix & GetMix(void) const

Get the variant data.

TSet & SetSet(void)

Select the variant.

bool IsSeq(void) const

Check if variant Seq is selected.

void SetDescr(TDescr &value)

Assign a value to Descr data member.

TSeq & SetSeq(void)

Select the variant.

TRepr GetRepr(void) const

Get the Repr member data.

TId & SetId(void)

Assign a value to Id data member.

const TInst & GetInst(void) const

Get the Inst member data.

TTitle & SetTitle(void)

Select the variant.

TPub & SetPub(void)

Select the variant.

bool IsSetAnnot(void) const

Check if a value has been assigned to Annot data member.

TGenbank & SetGenbank(void)

Select the variant.

const TAnnot & GetAnnot(void) const

Get the Annot member data.

const TId & GetId(void) const

Get the Id member data.

TTech GetTech(void) const

Get the Tech member data.

const Tdata & Get(void) const

Get the member data.

TComment & SetComment(void)

Select the variant.

void SetInst(TInst &value)

Assign a value to Inst data member.

void ResetTech(void)

Reset Tech data member.

TSource & SetSource(void)

Select the variant.

void SetTopology(TTopology value)

Assign a value to Topology data member.

ETopology

topology of molecule

void SetDescr(TDescr &value)

Assign a value to Descr data member.

bool IsSetTech(void) const

Check if a value has been assigned to Tech data member.

TUser & SetUser(void)

Select the variant.

void SetRepr(TRepr value)

Assign a value to Repr data member.

EStrand

strandedness in living organism

void SetStrand(TStrand value)

Assign a value to Strand data member.

void SetTech(TTech value)

Assign a value to Tech data member.

const TDescr & GetDescr(void) const

Get the Descr member data.

TMolinfo & SetMolinfo(void)

Select the variant.

TUpdate_date & SetUpdate_date(void)

Select the variant.

@ eRepr_delta

sequence made by changes (delta) to others

@ eRepr_raw

continuous sequence

@ eRepr_virtual

no seq data

@ eTech_htgs_2

ordered High Throughput sequence contig

@ eTech_other

use Source.techexp

@ eTech_htc

high throughput cDNA

@ eTech_targeted

targeted locus sets/studies

@ eTech_sts

Sequence Tagged Site.

@ eTech_htgs_3

finished High Throughput sequence

@ eTech_htgs_1

unordered High Throughput sequence contig

@ eTech_tsa

transcriptome shotgun assembly

@ eTech_wgs

whole genome shotgun sequencing

@ eTech_survey

one-pass genomic sequence

@ eTech_htgs_0

single genomic reads for coordination

@ eTech_fli_cdna

full length insert cDNA

@ eTech_est

Expressed Sequence Tag.

int CheckTPG(const string &str)

int CheckSTRAND(const string &str)

Int4 IsNewAccessFormat(const Char *acnum)

Int2 CheckDIV(const char *str)

CRef< CDate_std > GetUpdateDate(string_view str, Parser::ESource source)

void GetFlatBiomol(CMolInfo::TBiomol &biomol, CMolInfo::TTech tech, char *molstr, ParserPtr pp, const DataBlk &entry, const COrg_ref *org_ref)

void LoadFeat(ParserPtr pp, const DataBlk &entry, CBioseq &bioseq)

const struct ncbi::grid::netcache::search::fields::KEY key

const CharType(& source)[N]

std::list< SeqLoc > TSeqLocList

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

CRef< CPubdesc > DescrRefs(ParserPtr pp, DataBlk &dbp, Uint2 col_data)

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

static SLJIT_INLINE sljit_ins msg(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

CRef< objects::CSeq_entry > seq_entry

CRef< objects::CPatent_seq_id > psip

char *(* ff_get_qscore_pp)(const char *accession, Int2 v, Parser *pp)

vector< IndexblkPtr > entrylist

bool allow_crossdb_featloc

char *(* ff_get_qscore)(const char *accession, Int2 v)

bool GetGenomeInfo(CBioSource &bsp, string_view bptr)

void MaybeCutGbblockSource(TEntryList &seq_entries)

bool HasHtg(const TKeywordList &keywords)

char * SrchTheChar(string_view sv, Char letter)

bool HasHtc(const TKeywordList &keywords)

bool fta_tls_keywords_check(const TKeywordList &kwds, Parser::ESource source)

void RemoveHtgPhase(TKeywordList &keywords)

string GetBlkDataReplaceNewLine(string_view instr, Uint2 indent)

void fta_remove_tsa_keywords(TKeywordList &kwds, Parser::ESource source)

void fta_remove_tpa_keywords(TKeywordList &kwds)

bool SrchNodeType(const DataBlk &entry, Int4 type, size_t *plen, char **pptr)

TDataBlkList & TrackNodes(const DataBlk &entry)

void fta_remove_keywords(CMolInfo::TTech tech, TKeywordList &kwds)

void fta_remove_tls_keywords(TKeywordList &kwds, Parser::ESource source)

DataBlk * TrackNodeType(const DataBlk &entry, Int2 type)

void fta_remove_mag_keywords(TKeywordList &kwds)

void fta_keywords_check(string_view str, bool *estk, bool *stsk, bool *gssk, bool *htck, bool *flik, bool *wgsk, bool *tpak, bool *envk, bool *mgak, bool *tsak, bool *tlsk)

bool IsCancelled(const TKeywordList &keywords)

bool fta_tsa_keywords_check(const TKeywordList &kwds, Parser::ESource source)

void fta_remove_env_keywords(TKeywordList &kwds)

bool fta_tpa_keywords_check(const TKeywordList &kwds)

bool fta_check_mga_keywords(CMolInfo &mol_info, const TKeywordList &kwds)

CRef< CSeq_loc > xgbparseint_ver(string_view raw_intervals, bool &keep_rawPt, int &numErrors, const TSeqIdList &seq_ids, bool accver)

void XGappedSeqLocsToDeltaSeqs(const TSeqLocList &locs, TDeltaList &deltas)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4