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NCBI C++ ToolKit: src/objtools/format/gather_iter.cpp Source File

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x_AddSeqEntryToStack( top_seq_entry );

CGather_Iter::operator

(

)

m_BioseqIter || ! m_SeqEntryIterStack.empty();

( ; (*m_BioseqIter); ++(*m_BioseqIter) ) {

++lowest_seq_entry_iter;

( *lowest_seq_entry_iter ) {

( ; (*seq_iter); ++(*seq_iter) ) {

bool SuppressLocalId(void) const

bool IsViewNuc(void) const

bool IsViewFirst(void) const

bool IsViewAll(void) const

bool IsViewProt(void) const

bool x_AddSeqEntryToStack(const CSeq_entry_Handle &seq_entry)

std::vector< CSeq_entry_CI > m_SeqEntryIterStack

unique_ptr< CBioseq_CI > m_BioseqIter

CGather_Iter & operator++(void)

const CBioseq_Handle & operator*(void) const

bool x_IsBioseqHandleOkay(const CBioseq_Handle &bioseq)

const CFlatFileConfig & m_Config

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

TClass GetClass(void) const

bool IsSetClass(void) const

@ eLevel_Mains

Main bioseq only.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

@ eClass_pop_set

population study

@ eClass_phy_set

phylogenetic study

@ eClass_wgs_set

whole genome shotgun project

@ eClass_mut_set

set of mutations

@ eClass_eco_set

ecological sample study

@ eClass_gen_prod_set

genomic products, chrom+mRNA+protein

@ eClass_genbank

converted genbank

EMol

molecule class in living organism

@ eMol_not_set

> cdna = rna

@ eMol_na

just a nucleic acid

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