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NCBI C++ ToolKit: src/algo/blast/unit_tests/api/gapinfo_unit_test.cpp Source File

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45

BOOST_REQUIRE_EQUAL(kSize, esp->

size

);

49

BOOST_REQUIRE_EQUAL((

void

*)

NULL

, (

void

*) esp);

55  const int

kNums[kSize] = {7, 11, 13};

58  for

(

int i

=0;

i

<kSize;

i

++)

60

esp->

num

[

i

] = kNums[

i

];

65

BOOST_REQUIRE_EQUAL(kSize, esp_dup->

size

);

66  for

(

int i

=0;

i

<kSize;

i

++)

68

BOOST_REQUIRE_EQUAL(kNums[

i

], esp_dup->

num

[

i

]);

69

BOOST_REQUIRE_EQUAL(kOptype[

i

], esp_dup->

op_type

[

i

]);

BOOST_AUTO_TEST_SUITE_END() static int s_GetSegmentFlags(const CBioseq &bioseq)

Definitions of structures used for saving traceback information.

GapEditScript * GapEditScriptDup(const GapEditScript *old)

Duplicates the edit script structure.

EGapAlignOpType

Operation types within the edit script.

@ eGapAlignIns

Insertion: a gap in subject.

@ eGapAlignSub

Substitution.

@ eGapAlignDel

Deletion: a gap in query.

GapEditScript * GapEditScriptNew(Int4 size)

Initialize the edit script structure.

GapEditScript * GapEditScriptDelete(GapEditScript *esp)

Free edit script structure.

BOOST_AUTO_TEST_CASE(testGapEditScriptNew)

BOOST_AUTO_TEST_SUITE(psiblast_iteration)

Edit script: linked list of correspondencies between two sequences.

Int4 * num

Array of number of operations.

Int4 size

Size of above arrays.

EGapAlignOpType * op_type

Array of type of operation.

Utility stuff for more convenient using of Boost.Test library.

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