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NCBI C++ ToolKit: src/objtools/format/ftable_formatter.cpp Source File

loc.

() &&

need_key =

;

& curr = it.GetEmbeddingSeq_loc();

stop = range.

() + 1;

left = minus_strand ?

:

;

right = minus_strand ?

:

;

( minus_strand ) {

line = right +

+ left;

line = left +

+ right;

line =

+ (*it)->GetName();

line +=

+

;

@ eExtreme_Positional

numerical value

vector< CRef< CFormatQual > > TQuals

void x_FormatQuals(const CFlatFeature::TQuals &quals, CBioseqContext &ctx, list< string > &l)

void FormatFeature(const CFeatureItemBase &feat, IFlatTextOStream &text_os)

void x_FormatLocation(const CSeq_loc &loc, const string &key, CBioseqContext &ctx, list< string > &l)

void FormatFeatHeader(const CFeatHeaderItem &fh, IFlatTextOStream &text_os)

void FormatReference(const CReferenceItem &keys, IFlatTextOStream &text_os)

Seq-loc iterator class – iterates all intervals from a seq-loc in the correct order.

virtual void AddParagraph(const list< string > &, const CSerialObject *=nullptr)

This adds a list of strings to the stream one at a time, unconditionally adding a newline to each one...

Include a standard set of the NCBI C++ Toolkit most basic headers.

bool s_IsBetween(const CSeq_loc &loc)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

const string AsFastaString(void) const

bool IsPartialStart(ESeqLocExtremes ext) const

check start or stop of location for e_Lim fuzz

bool IsPartialStop(ESeqLocExtremes ext) const

TSeqPos GetLength(const CSeq_id &id, CScope *scope)

Get sequence length if scope not null, else return max possible TSeqPos.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static string & Replace(const string &src, const string &search, const string &replace, string &dst, SIZE_TYPE start_pos=0, SIZE_TYPE max_replace=0, SIZE_TYPE *num_replace=0)

Replace occurrences of a substring within a string.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

bool IsLim(void) const

Check if variant Lim is selected.

TLim GetLim(void) const

Get the variant data.

@ eLim_tr

space to right of position

const TPnt & GetPnt(void) const

Get the variant data.

bool IsSetFuzz(void) const

Check if a value has been assigned to Fuzz data member.

const TFuzz & GetFuzz(void) const

Get the Fuzz member data.

bool IsGi(void) const

Check if variant Gi is selected.

bool IsPnt(void) const

Check if variant Pnt is selected.

const struct ncbi::grid::netcache::search::fields::KEY key

const GenericPointer< typename T::ValueType > T2 value

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

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