A RetroSearch Logo

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Search Query:

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/flat__file__retrieve__job_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq/flat_file_retrieve_job.cpp Source File

94 enum

EFlatfileRowType {

139 static

EFlatfileRowType s_GetFlatRowType(

const IFlatItem

* itemp)

144  return

eRow_reference;

152  return

eRow_accession;

154  return

eRow_genom_project;

158  return

eRow_keywords;

162  return

eRow_feature_header;

164  return

eRow_source_feature;

168  return

eRow_sequence;

170  return

eRow_begin_section;

172  return

eRow_end_section;

174  return

eRow_dbsource;

175

}

else if

(

dynamic_cast<const CGapItem

*

>

(itemp) !=

NULL

) {

178  return

eRow_base_count;

183

}

else if

(

dynamic_cast<const CWGSItem

*

>

(itemp) !=

NULL

) {

185

}

else if

(

dynamic_cast<const CTSAItem

*

>

(itemp) !=

NULL

) {

189

}

else if

(

dynamic_cast<const CEndItem

*

>

(itemp) !=

NULL

) {

196 enum

EChapterType sChapters[] = {

312  const size_t

kLineSize = 60;

317  size_t

numLines = (length + kLineSize - 1)/kLineSize;

318  size_t

maxNumber = (numLines - 1)*kLineSize + 1;

323

}

while

(maxNumber > 0);

338  bool

expand =

false

) :

CExpandItem

(collapsedItem, expandedItem, expand) {}

357

EFlatfileRowType row_type = s_GetFlatRowType(itemp);

358

EChapterType chap_type = sChapters[row_type];

360  if

(row_type == eRow_begin)

363  if

(row_type == eRow_begin_section) {

368  else if

(row_type == eRow_end_section) {

379  m_Items

.push_back(expandItem);

386  else if

(row_type == eRow_locus) {

403  if

(row_type == eRow_unknown)

406  if

(row_type == eRow_end || row_type == eRow_end_section || chap_type !=

m_ChapterType

)

409  if

(row_type == eRow_end)

418  case

eChapter_header:

427  case

eChapter_references:

435  case

eChapter_comment:

443  case

eChapter_primary:

451  case

eChapter_features:

458  case

eChapter_sequence:

476  if

(eRow_source_feature == row_type ||eRow_feature == row_type || eRow_gap == row_type) {

481  else if

(eRow_sequence == row_type) {

486  else if

(eRow_locus == row_type) {

495  const

vector<pair<CBioseq_Handle, string> >& handles,

528  ctx

->SetAnnotSelector().SetResolveAll();

533

gatherer->Gather(*

ctx

, *builder);

535

vector<ITextItem*>& items = builder->GetItems();

536  if

(!items.empty()) {

537

item = items.front();

void AddItem(ITextItem *item, bool updatePositions=true)

void SetSelectable(bool selectable=true)

const CMappedFeat & GetFeat(void) const

CFlatFileExpandItem(CTextItem *collapsedItem, CTextItem *expandedItem, bool expand=false)

virtual bool Traverse(ICompositeTraverser &traverser)

vector< ITextItem * > m_Items

CFlatFileRetrieveJob & m_Job

vector< ITextItem * > & GetItems()

CFlatFileFactoryBuilder(CFlatFileRetrieveJob &job, bool hideVariations, bool hideSTS, CFlatFileContext &ctx)

virtual void AddItem(CConstRef< IFlatItem > item)

EChapterType m_ChapterType

~CFlatFileFactoryBuilder()

unique_ptr< CCompositeTextItem > m_CurrentSection

CCompositeTextItem * m_CurrentChapter

friend class CFlatFileFactoryBuilder

vector< pair< objects::CBioseq_Handle, string > > m_Handles

virtual EJobState x_Run()

virtual ~CFlatFileRetrieveJob()

CFlatFileRetrieveJob(CTextPanelContext &context, const vector< pair< objects::CBioseq_Handle, string > > &handles, const SFlatFileParams &params)

void SetEditFlags(int flags)

static CFlatGatherer * New(CFlatFileConfig::TFormat format)

CBioseqContext * GetContext(void)

const string & GetName(void) const

void AddLine(const string &line)

ESubtype GetSubtype(void) const

void x_CheckCancelled() const

void x_AddItem(ITextItem *item)

virtual bool ProcessItem(CTextItem &textItem)=0

const size_t kMinSeqBlockDigits

static size_t s_CalcSeqBlockDigits(size_t length)

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

EJobState

Job states (describe FSM)

bool IsNucleotide(void) const

const CSeqFeatData & GetData(void) const

TSeqPos GetBioseqLength(void) const

TObjectType * GetPointerOrNull(void) const THROWS_NONE

Get pointer value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

CConstRef< objects::CSeq_loc > m_SeqLoc

objects::CFlatFileConfig::EMode m_Mode

bool m_ShowComponentFeats

CConstRef< objects::CSubmit_block > m_SeqSubmit

objects::CFlatFileConfig::EStyle m_Style

static CS_CONTEXT * context

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4