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NCBI C++ ToolKit: include/objtools/format/flat_file_generator.hpp Source File

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1 #ifndef OBJTOOLS_FORMAT___FLAT_FILE_GENERATOR__HPP 2 #define OBJTOOLS_FORMAT___FLAT_FILE_GENERATOR__HPP 69

m_Os(os), m_On(on), m_Og(og), m_Or(or_), m_Op(op), m_Ou(ou)

72  operator bool

()

const

{

return

m_Os || m_On || m_Og || m_Or || m_Op || m_Ou; }

98  void

SetFeatTree(feature::CFeatTree*

tree

);

101  void

ResetSeqEntryIndex(

void

);

119  static string

GetFTableAnticodonText(

const CSeq_feat

& feat,

CScope

& scope);

145

: m_pUnderlying(&underlying),

146

m_pCanceledCallback(pCanceledCallback)

149  void

SetFormatter(

IFormatter

* formatter)

override

;

Use this class to wrap CFlatItemOStream instances so that they check if canceled for every item added...

const ICanceled * m_pCanceledCallback

CCancelableFlatItemOStreamWrapper(CFlatItemOStream &underlying, const ICanceled *pCanceledCallback)

CRef< CFlatItemOStream > m_pUnderlying

CFlatFileGenerator & operator=(const CFlatFileGenerator &)

void SetSubmit(const CSubmit_block &sub)

CFlatFileGenerator(const CFlatFileGenerator &)

CRef< CFlatFileContext > m_Ctx

namespace ncbi::objects::

Interface for testing cancellation request in a long lasting operation.

Include a standard set of the NCBI C++ Toolkit most basic headers.

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

#define NCBI_FORMAT_EXPORT

ENa_strand

strand of nucleic acid

The blob sat and sat key Both must be positive integers</td > n< td > Non empty string The interpretation of the blob id depends on a processor Cassandra n processor expects the following format

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

multiout(CNcbiOstream *os=nullptr, CNcbiOstream *on=nullptr, CNcbiOstream *og=nullptr, CNcbiOstream *or_=nullptr, CNcbiOstream *op=nullptr, CNcbiOstream *ou=nullptr)

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