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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/flat2err_8h_source.html below:

NCBI C++ ToolKit: include/objtools/flatfile/flat2err.h Source File

34 #ifndef __MODULE_flat2asn__ 35 #define __MODULE_flat2asn__ 38 #define ERR_FORMAT 1,0 39 #define ERR_FORMAT_MissingEnd 1,2 40 #define ERR_FORMAT_LineTypeOrder 1,6 41 #define ERR_FORMAT_MissingSequenceData 1,7 42 #define ERR_FORMAT_ContigWithSequenceData 1,8 43 #define ERR_FORMAT_MissingContigFeature 1,9 44 #define ERR_FORMAT_MissingSourceFeature 1,10 45 #define ERR_FORMAT_MultipleCopyright 1,11 46 #define ERR_FORMAT_MissingCopyright 1,12 47 #define ERR_FORMAT_MultiplePatRefs 1,13 48 #define ERR_FORMAT_DuplicateCrossRef 1,14 49 #define ERR_FORMAT_InvalidMolType 1,15 50 #define ERR_FORMAT_Unknown 1,16 51 #define ERR_FORMAT_UnexpectedData 1,17 52 #define ERR_FORMAT_InvalidECNumber 1,18 53 #define ERR_FORMAT_LongECNumber 1,19 54 #define ERR_FORMAT_UnusualECNumber 1,20 55 #define ERR_FORMAT_UnknownDetermineField 1,21 56 #define ERR_FORMAT_UnknownGeneField 1,22 57 #define ERR_FORMAT_ExcessGeneFields 1,23 58 #define ERR_FORMAT_MissingGeneName 1,24 59 #define ERR_FORMAT_InvalidPDBCrossRef 1,25 60 #define ERR_FORMAT_MixedPDBXrefs 1,26 61 #define ERR_FORMAT_IncorrectPROJECT 1,27 62 #define ERR_FORMAT_Date 1,28 63 #define ERR_FORMAT_ECNumberNotPresent 1,29 64 #define ERR_FORMAT_NoProteinNameCategory 1,30 65 #define ERR_FORMAT_MultipleRecName 1,31 66 #define ERR_FORMAT_MissingRecName 1,32 67 #define ERR_FORMAT_SwissProtHasSubName 1,33 68 #define ERR_FORMAT_MissingFullRecName 1,34 69 #define ERR_FORMAT_IncorrectDBLINK 1,35 70 #define ERR_FORMAT_AssemblyGapWithoutContig 1,37 71 #define ERR_FORMAT_ContigVersusAssemblyGapMissmatch 1,38 72 #define ERR_FORMAT_WrongBioProjectPrefix 1,39 73 #define ERR_FORMAT_InvalidBioProjectAcc 1,40 75 #define ERR_DATACLASS 2,0 76 #define ERR_DATACLASS_UnKnownClass 2,1 79 #define ERR_ENTRY_ParsingComplete 3,2 80 #define ERR_ENTRY_Skipped 3,6 81 #define ERR_ENTRY_Repeated 3,7 82 #define ERR_ENTRY_LongSequence 3,8 83 #define ERR_ENTRY_Parsed 3,10 84 #define ERR_ENTRY_ParsingSetup 3,11 85 #define ERR_ENTRY_GBBlock_not_Empty 3,12 86 #define ERR_ENTRY_LongHTGSSequence 3,13 87 #define ERR_ENTRY_NumKeywordBlk 3,14 88 #define ERR_ENTRY_Dropped 3,15 89 #define ERR_ENTRY_TSALacksStructuredComment 3,16 90 #define ERR_ENTRY_TSALacksBioProjectLink 3,17 91 #define ERR_ENTRY_TLSLacksStructuredComment 3,18 92 #define ERR_ENTRY_TLSLacksBioProjectLink 3,19 94 #define ERR_COMMENT 4,0 95 #define ERR_COMMENT_NCBI_gi_in 4,1 96 #define ERR_COMMENT_InvalidStructuredComment 4,2 97 #define ERR_COMMENT_SameStructuredCommentTags 4,3 98 #define ERR_COMMENT_StructuredCommentLacksDelim 4,4 101 #define ERR_DATE_NumKeywordBlk 5,1 102 #define ERR_DATE_IllegalDate 5,2 104 #define ERR_QUALIFIER 6,0 105 #define ERR_QUALIFIER_MissingTerminalDoubleQuote 6,1 106 #define ERR_QUALIFIER_UnbalancedQuotes 6,2 107 #define ERR_QUALIFIER_EmbeddedQual 6,3 108 #define ERR_QUALIFIER_EmptyQual 6,4 109 #define ERR_QUALIFIER_ShouldNotHaveValue 6,5 110 #define ERR_QUALIFIER_DbxrefIncorrect 6,6 111 #define ERR_QUALIFIER_DbxrefShouldBeNumeric 6,7 112 #define ERR_QUALIFIER_DbxrefUnknownDBName 6,8 113 #define ERR_QUALIFIER_DbxrefWrongType 6,9 114 #define ERR_QUALIFIER_DuplicateRemoved 6,10 115 #define ERR_QUALIFIER_MultRptUnitComma 6,11 116 #define ERR_QUALIFIER_IllegalCompareQualifier 6,12 117 #define ERR_QUALIFIER_InvalidEvidence 6,13 118 #define ERR_QUALIFIER_InvalidException 6,14 119 #define ERR_QUALIFIER_ObsoleteRptUnit 6,15 120 #define ERR_QUALIFIER_InvalidRptUnitRange 6,16 121 #define ERR_QUALIFIER_InvalidPCRprimer 6,17 122 #define ERR_QUALIFIER_MissingPCRprimerSeq 6,18 123 #define ERR_QUALIFIER_PCRprimerEmbeddedComma 6,19 124 #define ERR_QUALIFIER_Conflict 6,20 125 #define ERR_QUALIFIER_InvalidArtificialLoc 6,21 126 #define ERR_QUALIFIER_MissingGapType 6,22 127 #define ERR_QUALIFIER_MissingLinkageEvidence 6,23 128 #define ERR_QUALIFIER_InvalidGapTypeForLinkageEvidence 6,24 129 #define ERR_QUALIFIER_InvalidGapType 6,25 130 #define ERR_QUALIFIER_InvalidLinkageEvidence 6,26 131 #define ERR_QUALIFIER_MultiplePseudoGeneQuals 6,27 132 #define ERR_QUALIFIER_InvalidPseudoGeneValue 6,28 133 #define ERR_QUALIFIER_OldPseudoWithPseudoGene 6,29 134 #define ERR_QUALIFIER_AntiCodonLacksSequence 6,30 135 #define ERR_QUALIFIER_UnexpectedGapTypeForHTG 6,31 136 #define ERR_QUALIFIER_LinkageShouldBeUnspecified 6,32 137 #define ERR_QUALIFIER_LinkageShouldNotBeUnspecified 6,33 138 #define ERR_QUALIFIER_InvalidRegulatoryClass 6,34 139 #define ERR_QUALIFIER_MissingRegulatoryClass 6,35 140 #define ERR_QUALIFIER_MultipleRegulatoryClass 6,36 141 #define ERR_QUALIFIER_NoNoteForOtherRegulatory 6,37 142 #define ERR_QUALIFIER_NoRefForCiteQual 6,38 143 #define ERR_QUALIFIER_NoTextAfterEqualSign 6,39 144 #define ERR_QUALIFIER_UnknownQualifier 6,40 146 #define ERR_SEQUENCE 7,0 147 #define ERR_SEQUENCE_UnknownBaseHTG3 7,1 148 #define ERR_SEQUENCE_SeqLenNotEq 7,2 149 #define ERR_SEQUENCE_BadResidue 7,3 150 #define ERR_SEQUENCE_BadData 7,4 151 #define ERR_SEQUENCE_HTGWithoutGaps 7,5 152 #define ERR_SEQUENCE_HTGPossibleShortGap 7,6 153 #define ERR_SEQUENCE_NumKeywordBlk 7,7 154 #define ERR_SEQUENCE_HTGPhaseZeroHasGap 7,8 155 #define ERR_SEQUENCE_TooShort 7,9 156 #define ERR_SEQUENCE_AllNs 7,10 157 #define ERR_SEQUENCE_TooShortIsPatent 7,11 158 #define ERR_SEQUENCE_HasManyComponents 7,12 159 #define ERR_SEQUENCE_MultipleWGSProjects 7,13 161 #define ERR_SEGMENT 8,0 162 #define ERR_SEGMENT_MissSegEntry 8,1 163 #define ERR_SEGMENT_DiffMolType 8,2 164 #define ERR_SEGMENT_PubMatch 8,5 165 #define ERR_SEGMENT_OnlyOneMember 8,6 166 #define ERR_SEGMENT_Rejected 8,7 167 #define ERR_SEGMENT_GPIDMissingOrNonUnique 8,8 168 #define ERR_SEGMENT_DBLinkMissingOrNonUnique 8,9 170 #define ERR_ACCESSION 9,0 171 #define ERR_ACCESSION_CannotGetDivForSecondary 9,1 172 #define ERR_ACCESSION_InvalidAccessNum 9,5 173 #define ERR_ACCESSION_WGSWithNonWGS_Sec 9,6 174 #define ERR_ACCESSION_WGSMasterAsSecondary 9,7 175 #define ERR_ACCESSION_UnusualWGS_Secondary 9,8 176 #define ERR_ACCESSION_ScfldHasWGSContigSec 9,9 177 #define ERR_ACCESSION_WGSPrefixMismatch 9,10 179 #define ERR_LOCUS 10,0 180 #define ERR_LOCUS_WrongTopology 10,2 181 #define ERR_LOCUS_NonViralRNAMoltype 10,9 183 #define ERR_ORGANISM 11,0 184 #define ERR_ORGANISM_NoOrganism 11,1 185 #define ERR_ORGANISM_HybridOrganism 11,2 186 #define ERR_ORGANISM_Unclassified 11,3 187 #define ERR_ORGANISM_MissParen 11,4 188 #define ERR_ORGANISM_UnknownReplace 11,5 189 #define ERR_ORGANISM_NoSourceFeatMatch 11,6 190 #define ERR_ORGANISM_UnclassifiedLineage 11,7 191 #define ERR_ORGANISM_TaxIdNotUnique 11,10 192 #define ERR_ORGANISM_TaxNameNotFound 11,11 193 #define ERR_ORGANISM_TaxIdNotSpecLevel 11,12 194 #define ERR_ORGANISM_NewSynonym 11,13 195 #define ERR_ORGANISM_NoFormalName 11,14 196 #define ERR_ORGANISM_Empty 11,15 197 #define ERR_ORGANISM_Diff 11,16 198 #define ERR_ORGANISM_SynOrgNameNotSYNdivision 11,17 199 #define ERR_ORGANISM_LineageLacksMetagenome 11,18 200 #define ERR_ORGANISM_OrgNameLacksMetagenome 11,19 202 #define ERR_KEYWORD 12,0 203 #define ERR_KEYWORD_MultipleHTGPhases 12,1 204 #define ERR_KEYWORD_ESTSubstring 12,2 205 #define ERR_KEYWORD_STSSubstring 12,3 206 #define ERR_KEYWORD_GSSSubstring 12,4 207 #define ERR_KEYWORD_ConflictingKeywords 12,5 208 #define ERR_KEYWORD_ShouldNotBeTPA 12,6 209 #define ERR_KEYWORD_MissingTPA 12,7 210 #define ERR_KEYWORD_IllegalForCON 12,8 211 #define ERR_KEYWORD_ShouldNotBeCAGE 12,9 212 #define ERR_KEYWORD_MissingCAGE 12,10 213 #define ERR_KEYWORD_NoGeneExpressionKeywords 12,11 214 #define ERR_KEYWORD_ENV_NoMatchingQualifier 12,12 215 #define ERR_KEYWORD_ShouldNotBeTSA 12,13 216 #define ERR_KEYWORD_MissingTSA 12,14 217 #define ERR_KEYWORD_HTGPlusENV 12,15 218 #define ERR_KEYWORD_ShouldNotBeTLS 12,16 219 #define ERR_KEYWORD_MissingTLS 12,17 221 #define ERR_DIVISION 13,0 222 #define ERR_DIVISION_UnknownDivCode 13,1 223 #define ERR_DIVISION_MappedtoEST 13,2 224 #define ERR_DIVISION_MappedtoPAT 13,3 225 #define ERR_DIVISION_MappedtoSTS 13,4 226 #define ERR_DIVISION_Mismatch 13,5 227 #define ERR_DIVISION_MissingESTKeywords 13,6 228 #define ERR_DIVISION_MissingSTSKeywords 13,7 229 #define ERR_DIVISION_MissingPatentRef 13,8 230 #define ERR_DIVISION_PATHasESTKeywords 13,9 231 #define ERR_DIVISION_PATHasSTSKeywords 13,10 232 #define ERR_DIVISION_PATHasCDSFeature 13,11 233 #define ERR_DIVISION_STSHasCDSFeature 13,12 234 #define ERR_DIVISION_NotMappedtoSTS 13,13 235 #define ERR_DIVISION_ESTHasSTSKeywords 13,14 236 #define ERR_DIVISION_ESTHasCDSFeature 13,15 237 #define ERR_DIVISION_NotMappedtoEST 13,16 238 #define ERR_DIVISION_ShouldBeHTG 13,17 239 #define ERR_DIVISION_MissingGSSKeywords 13,18 240 #define ERR_DIVISION_GSSHasCDSFeature 13,19 241 #define ERR_DIVISION_NotMappedtoGSS 13,20 242 #define ERR_DIVISION_MappedtoGSS 13,21 243 #define ERR_DIVISION_PATHasGSSKeywords 13,22 244 #define ERR_DIVISION_LongESTSequence 13,23 245 #define ERR_DIVISION_LongSTSSequence 13,24 246 #define ERR_DIVISION_LongGSSSequence 13,25 247 #define ERR_DIVISION_GBBlockDivision 13,26 248 #define ERR_DIVISION_MappedtoCON 13,27 249 #define ERR_DIVISION_MissingHTGKeywords 13,28 250 #define ERR_DIVISION_ShouldNotBeHTG 13,29 251 #define ERR_DIVISION_ConDivInSegset 13,30 252 #define ERR_DIVISION_ConDivLacksContig 13,31 253 #define ERR_DIVISION_MissingHTCKeyword 13,32 254 #define ERR_DIVISION_InvalidHTCKeyword 13,33 255 #define ERR_DIVISION_HTCWrongMolType 13,34 256 #define ERR_DIVISION_ShouldBePAT 13,35 257 #define ERR_DIVISION_BadTPADivcode 13,36 258 #define ERR_DIVISION_ShouldBeENV 13,37 259 #define ERR_DIVISION_TGNnotTransgenic 13,38 260 #define ERR_DIVISION_TransgenicNotSYN_TGN 13,39 261 #define ERR_DIVISION_BadTSADivcode 13,40 262 #define ERR_DIVISION_NotPatentedSeqId 13,41 264 #define ERR_DEFINITION 15,0 265 #define ERR_DEFINITION_HTGNotInProgress 15,1 266 #define ERR_DEFINITION_DifferingRnaTokens 15,2 267 #define ERR_DEFINITION_HTGShouldBeComplete 15,3 268 #define ERR_DEFINITION_ShouldNotBeTPA 15,4 269 #define ERR_DEFINITION_MissingTPA 15,5 270 #define ERR_DEFINITION_ShouldNotBeTSA 15,6 271 #define ERR_DEFINITION_MissingTSA 15,7 272 #define ERR_DEFINITION_ShouldNotBeTLS 15,8 273 #define ERR_DEFINITION_MissingTLS 15,9 275 #define ERR_REFERENCE 16,0 276 #define ERR_REFERENCE_IllegPageRange 16,3 277 #define ERR_REFERENCE_UnkRefRcToken 16,4 278 #define ERR_REFERENCE_UnkRefSubType 16,5 279 #define ERR_REFERENCE_IllegalFormat 16,6 280 #define ERR_REFERENCE_IllegalAuthorName 16,7 281 #define ERR_REFERENCE_YearEquZero 16,8 282 #define ERR_REFERENCE_IllegalDate 16,9 283 #define ERR_REFERENCE_Patent 16,10 284 #define ERR_REFERENCE_Thesis 16,12 285 #define ERR_REFERENCE_Book 16,14 286 #define ERR_REFERENCE_NoContactInfo 16,15 287 #define ERR_REFERENCE_Illegalreference 16,16 288 #define ERR_REFERENCE_Fail_to_parse 16,17 289 #define ERR_REFERENCE_No_references 16,18 290 #define ERR_REFERENCE_InvalidInPress 16,22 291 #define ERR_REFERENCE_EtAlInAuthors 16,24 292 #define ERR_REFERENCE_UnusualPageNumber 16,25 293 #define ERR_REFERENCE_LargePageRange 16,26 294 #define ERR_REFERENCE_InvertPageRange 16,27 295 #define ERR_REFERENCE_SingleTokenPageRange 16,28 296 #define ERR_REFERENCE_MissingBookPages 16,29 297 #define ERR_REFERENCE_MissingBookAuthors 16,30 298 #define ERR_REFERENCE_DateCheck 16,31 299 #define ERR_REFERENCE_GsdbRefDropped 16,32 300 #define ERR_REFERENCE_UnusualBookFormat 16,33 301 #define ERR_REFERENCE_ImpendingYear 16,34 302 #define ERR_REFERENCE_YearPrecedes1950 16,35 303 #define ERR_REFERENCE_YearPrecedes1900 16,36 304 #define ERR_REFERENCE_NumKeywordBlk 16,37 305 #define ERR_REFERENCE_UnparsableLocation 16,38 306 #define ERR_REFERENCE_LongAuthorName 16,39 307 #define ERR_REFERENCE_MissingAuthors 16,40 308 #define ERR_REFERENCE_InvalidPmid 16,41 309 #define ERR_REFERENCE_InvalidMuid 16,42 310 #define ERR_REFERENCE_CitArtLacksPmid 16,43 311 #define ERR_REFERENCE_DifferentPmids 16,44 312 #define ERR_REFERENCE_MuidPmidMissMatch 16,45 313 #define ERR_REFERENCE_MultipleIdentifiers 16,46 314 #define ERR_REFERENCE_MuidIgnored 16,47 315 #define ERR_REFERENCE_PmidIgnored 16,48 316 #define ERR_REFERENCE_ArticleIdDiscarded 16,49 317 #define ERR_REFERENCE_UnusualPubStatus 16,50 319 #define ERR_FEATURE 17,0 320 #define ERR_FEATURE_MultFocusedFeats 17,1 321 #define ERR_FEATURE_ExpectEmptyComment 17,6 322 #define ERR_FEATURE_DiscardData 17,7 323 #define ERR_FEATURE_InValidEndPoint 17,9 324 #define ERR_FEATURE_MissManQual 17,10 325 #define ERR_FEATURE_NoFeatData 17,11 326 #define ERR_FEATURE_NoFragment 17,12 327 #define ERR_FEATURE_NotSeqEndPoint 17,13 328 #define ERR_FEATURE_OldNonExp 17,15 329 #define ERR_FEATURE_PartialNoNonTer 17,16 330 #define ERR_FEATURE_Pos 17,17 331 #define ERR_FEATURE_TooManyInitMet 17,20 332 #define ERR_FEATURE_UnEqualEndPoint 17,22 333 #define ERR_FEATURE_UnknownFeatKey 17,23 334 #define ERR_FEATURE_UnknownQualSpelling 17,24 335 #define ERR_FEATURE_LocationParsing 17,30 336 #define ERR_FEATURE_FeatureKeyReplaced 17,32 337 #define ERR_FEATURE_Dropped 17,33 338 #define ERR_FEATURE_UnknownDBName 17,36 339 #define ERR_FEATURE_Duplicated 17,37 340 #define ERR_FEATURE_NoSource 17,38 341 #define ERR_FEATURE_MultipleSource 17,39 342 #define ERR_FEATURE_ObsoleteFeature 17,40 343 #define ERR_FEATURE_UnparsableLocation 17,41 344 #define ERR_FEATURE_BadAnticodonLoc 17,42 345 #define ERR_FEATURE_CDSNotFound 17,43 346 #define ERR_FEATURE_CannotMapDnaLocToAALoc 17,44 347 #define ERR_FEATURE_BadLocation 17,45 348 #define ERR_FEATURE_BadOrgRefFeatOnBackbone 17,46 349 #define ERR_FEATURE_DuplicateRemoved 17,47 350 #define ERR_FEATURE_FourBaseAntiCodon 17,48 351 #define ERR_FEATURE_StrangeAntiCodonSize 17,49 352 #define ERR_FEATURE_MultipleLocusTags 17,50 353 #define ERR_FEATURE_InconsistentLocusTagAndGene 17,51 354 #define ERR_FEATURE_MultipleOperonQuals 17,52 355 #define ERR_FEATURE_MissingOperonQual 17,53 356 #define ERR_FEATURE_OperonQualsNotUnique 17,54 357 #define ERR_FEATURE_InvalidOperonQual 17,55 358 #define ERR_FEATURE_OperonLocationMisMatch 17,56 359 #define ERR_FEATURE_ObsoleteDbXref 17,57 360 #define ERR_FEATURE_EmptyOldLocusTag 17,58 361 #define ERR_FEATURE_RedundantOldLocusTag 17,59 362 #define ERR_FEATURE_OldLocusTagWithoutNew 17,60 363 #define ERR_FEATURE_MatchingOldNewLocusTag 17,61 364 #define ERR_FEATURE_InvalidGapLocation 17,62 365 #define ERR_FEATURE_OverlappingGaps 17,63 366 #define ERR_FEATURE_ContiguousGaps 17,64 367 #define ERR_FEATURE_NsAbutGap 17,65 368 #define ERR_FEATURE_AllNsBetweenGaps 17,66 369 #define ERR_FEATURE_InvalidGapSequence 17,67 370 #define ERR_FEATURE_RequiredQualifierMissing 17,68 371 #define ERR_FEATURE_IllegalEstimatedLength 17,69 372 #define ERR_FEATURE_GapSizeEstLengthMissMatch 17,70 373 #define ERR_FEATURE_UnknownGapNot100 17,71 374 #define ERR_FEATURE_MoreThanOneCAGEFeat 17,72 375 #define ERR_FEATURE_Invalid_INIT_MET 17,73 376 #define ERR_FEATURE_INIT_MET_insert 17,74 377 #define ERR_FEATURE_MissingInitMet 17,75 378 #define ERR_FEATURE_ncRNA_class 17,76 379 #define ERR_FEATURE_InvalidSatelliteType 17,77 380 #define ERR_FEATURE_NoSatelliteClassOrIdentifier 17,78 381 #define ERR_FEATURE_PartialNoNonTerNonCons 17,79 382 #define ERR_FEATURE_AssemblyGapAndLegacyGap 17,80 383 #define ERR_FEATURE_InvalidAssemblyGapLocation 17,81 384 #define ERR_FEATURE_InvalidQualifier 17,82 385 #define ERR_FEATURE_MultipleGenesDifferentLocusTags 17,83 386 #define ERR_FEATURE_InvalidAnticodonPos 17,84 387 #define ERR_FEATURE_InconsistentPseudogene 17,85 388 #define ERR_FEATURE_MultipleWBGeneXrefs 17,86 389 #define ERR_FEATURE_FinishedHTGHasAssemblyGap 17,87 390 #define ERR_FEATURE_MultipleOldLocusTags 17,88 391 #define ERR_FEATURE_InvalidQualifierValue 17,89 393 #define ERR_LOCATION 18,0 394 #define ERR_LOCATION_FailedCheck 18,1 395 #define ERR_LOCATION_MixedStrand 18,2 396 #define ERR_LOCATION_PeptideFeatOutOfFrame 18,3 397 #define ERR_LOCATION_AccessionNotTPA 18,4 398 #define ERR_LOCATION_ContigHasNull 18,5 399 #define ERR_LOCATION_TransSpliceMixedStrand 18,6 400 #define ERR_LOCATION_AccessionNotTSA 18,7 401 #define ERR_LOCATION_SeqIdProblem 18,8 402 #define ERR_LOCATION_TpaAndNonTpa 18,9 403 #define ERR_LOCATION_CrossDatabaseFeatLoc 18,10 404 #define ERR_LOCATION_RefersToExternalRecord 18,11 405 #define ERR_LOCATION_NCBIRefersToExternalRecord 18,12 406 #define ERR_LOCATION_ContigAndScaffold 18,13 407 #define ERR_LOCATION_AccessionNotTLS 18,14 409 #define ERR_GENENAME 19,0 410 #define ERR_GENENAME_IllegalGeneName 19,1 411 #define ERR_GENENAME_DELineGeneName 19,2 413 #define ERR_BIOSEQSETCLASS 20,0 414 #define ERR_BIOSEQSETCLASS_NewClass 20,1 416 #define ERR_CDREGION 21,0 417 #define ERR_CDREGION_InternalStopCodonFound 21,2 418 #define ERR_CDREGION_NoProteinSeq 21,6 419 #define ERR_CDREGION_TerminalStopCodonMissing 21,7 420 #define ERR_CDREGION_TranslationDiff 21,8 421 #define ERR_CDREGION_TranslationsAgree 21,9 422 #define ERR_CDREGION_IllegalStart 21,10 423 #define ERR_CDREGION_GeneticCodeDiff 21,11 424 #define ERR_CDREGION_UnevenLocation 21,12 425 #define ERR_CDREGION_ShortProtein 21,13 426 #define ERR_CDREGION_GeneticCodeAssumed 21,14 427 #define ERR_CDREGION_NoTranslationCompare 21,15 428 #define ERR_CDREGION_TranslationAdded 21,16 429 #define ERR_CDREGION_InvalidGcodeTable 21,17 430 #define ERR_CDREGION_ConvertToImpFeat 21,18 431 #define ERR_CDREGION_BadLocForTranslation 21,19 432 #define ERR_CDREGION_LocationLength 21,20 433 #define ERR_CDREGION_TranslationOverride 21,21 434 #define ERR_CDREGION_InvalidDb_xref 21,24 435 #define ERR_CDREGION_Multiple_PID 21,28 436 #define ERR_CDREGION_TooBad 21,29 437 #define ERR_CDREGION_MissingProteinId 21,30 438 #define ERR_CDREGION_MissingProteinVersion 21,31 439 #define ERR_CDREGION_IncorrectProteinVersion 21,32 440 #define ERR_CDREGION_IncorrectProteinAccession 21,33 441 #define ERR_CDREGION_MissingCodonStart 21,34 442 #define ERR_CDREGION_MissingTranslation 21,35 443 #define ERR_CDREGION_PseudoWithTranslation 21,36 444 #define ERR_CDREGION_UnexpectedProteinId 21,37 445 #define ERR_CDREGION_NCBI_gi_in 21,38 446 #define ERR_CDREGION_StopCodonOnly 21,39 447 #define ERR_CDREGION_StopCodonBadInterval 21,40 448 #define ERR_CDREGION_ProteinLenDiff 21,41 449 #define ERR_CDREGION_SuppliedProteinUsed 21,42 450 #define ERR_CDREGION_IllegalException 21,43 451 #define ERR_CDREGION_BadTermStopException 21,44 452 #define ERR_CDREGION_BadCodonQualFormat 21,45 453 #define ERR_CDREGION_InvalidCodonQual 21,46 454 #define ERR_CDREGION_CodonQualifierUsed 21,47 455 #define ERR_CDREGION_UnneededCodonQual 21,48 457 #define ERR_GENEREF 22,0 458 #define ERR_GENEREF_GeneIntervalOverlap 22,1 459 #define ERR_GENEREF_NoUniqMaploc 22,2 460 #define ERR_GENEREF_BothStrands 22,3 461 #define ERR_GENEREF_CircularHeuristicFit 22,4 462 #define ERR_GENEREF_CircularHeuristicDoesNotFit 22,5 464 #define ERR_PROTREF 23,0 465 #define ERR_PROTREF_NoNameForProtein 23,1 467 #define ERR_SEQID 24,0 468 #define ERR_SEQID_NoSeqId 24,1 470 #define ERR_SERVER 26,0 471 #define ERR_SERVER_NotUsed 26,1 472 #define ERR_SERVER_Failed 26,2 473 #define ERR_SERVER_NoLineageFromTaxon 26,3 474 #define ERR_SERVER_GcFromSuppliedLineage 26,6 475 #define ERR_SERVER_TaxNameWasFound 26,7 476 #define ERR_SERVER_TaxServerDown 26,8 477 #define ERR_SERVER_NoTaxLookup 26,9 478 #define ERR_SERVER_NoPubMedLookup 26,10 480 #define ERR_SPROT 28,0 481 #define ERR_SPROT_DRLine 28,1 482 #define ERR_SPROT_PELine 28,2 483 #define ERR_SPROT_DRLineCrossDBProtein 28,3 485 #define ERR_SOURCE 29,0 486 #define ERR_SOURCE_InvalidCountry 29,1 487 #define ERR_SOURCE_OrganelleQualMultToks 29,2 488 #define ERR_SOURCE_OrganelleIllegalClass 29,3 489 #define ERR_SOURCE_GenomicViralRnaAssumed 29,4 490 #define ERR_SOURCE_UnclassifiedViralRna 29,5 491 #define ERR_SOURCE_LineageImpliesGenomicViralRna 29,6 492 #define ERR_SOURCE_InvalidDbXref 29,7 493 #define ERR_SOURCE_FeatureMissing 29,8 494 #define ERR_SOURCE_InvalidLocation 29,9 495 #define ERR_SOURCE_BadLocation 29,10 496 #define ERR_SOURCE_NoOrganismQual 29,11 497 #define ERR_SOURCE_IncompleteCoverage 29,12 498 #define ERR_SOURCE_ExcessSpanning 29,13 499 #define ERR_SOURCE_FocusQualNotNeeded 29,14 500 #define ERR_SOURCE_MultipleOrganismWithFocus 29,15 501 #define ERR_SOURCE_FocusQualMissing 29,16 502 #define ERR_SOURCE_MultiOrgOverlap 29,17 503 #define ERR_SOURCE_UnusualLocation 29,18 504 #define ERR_SOURCE_OrganismIncomplete 29,19 505 #define ERR_SOURCE_UnwantedQualifiers 29,20 506 #define ERR_SOURCE_ManySourceFeats 29,21 507 #define ERR_SOURCE_MissingSourceFeatureForDescr 29,22 508 #define ERR_SOURCE_FocusAndTransposonNotAllowed 29,23 509 #define ERR_SOURCE_FocusQualNotFullLength 29,24 510 #define ERR_SOURCE_UnusualOrgName 29,25 511 #define ERR_SOURCE_QualUnknown 29,26 512 #define ERR_SOURCE_QualDiffValues 29,27 513 #define ERR_SOURCE_IllegalQual 29,28 514 #define ERR_SOURCE_NotFound 29,29 515 #define ERR_SOURCE_GeneticCode 29,30 516 #define ERR_SOURCE_TransgenicTooShort 29,31 517 #define ERR_SOURCE_FocusAndTransgenicQuals 29,32 518 #define ERR_SOURCE_MultipleTransgenicQuals 29,33 519 #define ERR_SOURCE_ExcessCoverage 29,34 520 #define ERR_SOURCE_TransSingleOrgName 29,35 521 #define ERR_SOURCE_PartialLocation 29,37 522 #define ERR_SOURCE_PartialQualifier 29,38 523 #define ERR_SOURCE_SingleSourceTooShort 29,39 524 #define ERR_SOURCE_InconsistentMolType 29,40 525 #define ERR_SOURCE_MultipleMolTypes 29,41 526 #define ERR_SOURCE_InvalidMolType 29,42 527 #define ERR_SOURCE_MolTypesDisagree 29,43 528 #define ERR_SOURCE_MolTypeSeqTypeConflict 29,44 529 #define ERR_SOURCE_MissingMolType 29,45 530 #define ERR_SOURCE_UnknownOXType 29,46 531 #define ERR_SOURCE_InvalidNcbiTaxID 29,47 532 #define ERR_SOURCE_NoNcbiTaxIDLookup 29,48 533 #define ERR_SOURCE_NcbiTaxIDLookupFailure 29,49 534 #define ERR_SOURCE_ConflictingGenomes 29,50 535 #define ERR_SOURCE_OrgNameVsTaxIDMissMatch 29,52 536 #define ERR_SOURCE_InconsistentEnvSampQual 29,53 537 #define ERR_SOURCE_MissingEnvSampQual 29,54 538 #define ERR_SOURCE_MissingPlasmidName 29,55 539 #define ERR_SOURCE_UnknownOHType 29,56 540 #define ERR_SOURCE_IncorrectOHLine 29,57 541 #define ERR_SOURCE_HostNameVsTaxIDMissMatch 29,58 542 #define ERR_SOURCE_ObsoleteDbXref 29,59 543 #define ERR_SOURCE_InvalidCollectionDate 29,60 544 #define ERR_SOURCE_FormerCountry 29,61 545 #define ERR_SOURCE_MultipleSubmitterSeqids 29,62 546 #define ERR_SOURCE_DifferentSubmitterSeqids 29,63 547 #define ERR_SOURCE_LackingSubmitterSeqids 29,64 548 #define ERR_SOURCE_SubmitterSeqidNotAllowed 29,65 549 #define ERR_SOURCE_SubmitterSeqidDropped 29,66 550 #define ERR_SOURCE_SubmitterSeqidIgnored 29,67 551 #define ERR_SOURCE_DescriptorDropped 29,71 553 #define ERR_QSCORE 30,0 554 #define ERR_QSCORE_MissingByteStore 30,1 555 #define ERR_QSCORE_NonLiteralDelta 30,2 556 #define ERR_QSCORE_UnknownDelta 30,3 557 #define ERR_QSCORE_EmptyLiteral 30,4 558 #define ERR_QSCORE_ZeroLengthLiteral 30,5 559 #define ERR_QSCORE_MemAlloc 30,6 560 #define ERR_QSCORE_NonZeroInGap 30,7 561 #define ERR_QSCORE_InvalidArgs 30,8 562 #define ERR_QSCORE_BadBioseqLen 30,9 563 #define ERR_QSCORE_BadBioseqId 30,10 564 #define ERR_QSCORE_BadQscoreRead 30,11 565 #define ERR_QSCORE_BadDefline 30,12 566 #define ERR_QSCORE_NoAccession 30,13 567 #define ERR_QSCORE_NoSeqVer 30,14 568 #define ERR_QSCORE_NoTitle 30,15 569 #define ERR_QSCORE_BadLength 30,16 570 #define ERR_QSCORE_BadMinMax 30,17 571 #define ERR_QSCORE_BadScoreLine 30,18 572 #define ERR_QSCORE_ScoresVsLen 30,19 573 #define ERR_QSCORE_ScoresVsBspLen 30,20 574 #define ERR_QSCORE_BadMax 30,21 575 #define ERR_QSCORE_BadMin 30,22 576 #define ERR_QSCORE_BadTitle 30,23 577 #define ERR_QSCORE_OutOfScores 30,24 578 #define ERR_QSCORE_NonByteGraph 30,25 579 #define ERR_QSCORE_FailedToParse 30,26 580 #define ERR_QSCORE_DoubleSlash 30,27 582 #define ERR_TITLE 31,0 583 #define ERR_TITLE_NumKeywordBlk 31,1 585 #define ERR_SUMMARY 32,0 586 #define ERR_SUMMARY_NumKeywordBlk 32,1 589 #define ERR_TPA_InvalidPrimarySpan 33,1 590 #define ERR_TPA_InvalidPrimarySeqId 33,2 591 #define ERR_TPA_InvalidPrimaryBlock 33,3 592 #define ERR_TPA_IncompleteCoverage 33,4 593 #define ERR_TPA_SpanLengthDiff 33,5 594 #define ERR_TPA_SpanDiffOver300bp 33,6 595 #define ERR_TPA_TpaSpansMissing 33,7 596 #define ERR_TPA_TpaCommentMissing 33,8 598 #define ERR_DRXREF 34,0 599 #define ERR_DRXREF_UnknownDBname 34,1 600 #define ERR_DRXREF_InvalidBioSample 34,2 601 #define ERR_DRXREF_DuplicatedBioSamples 34,3 602 #define ERR_DRXREF_InvalidSRA 34,4 603 #define ERR_DRXREF_DuplicatedSRA 34,5 606 #define ERR_TSA_InvalidPrimarySpan 35,1 607 #define ERR_TSA_InvalidPrimarySeqId 35,2 608 #define ERR_TSA_InvalidPrimaryBlock 35,3 609 #define ERR_TSA_IncompleteCoverage 35,4 610 #define ERR_TSA_SpanLengthDiff 35,5 611 #define ERR_TSA_SpanDiffOver300bp 35,6 612 #define ERR_TSA_UnexpectedPrimaryAccession 35,7 614 #define ERR_DBLINK 36,0 615 #define ERR_DBLINK_InvalidIdentifier 36,1 616 #define ERR_DBLINK_DuplicateIdentifierRemoved 36,2

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