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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/featuretbl__frame_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/featuretbl_frame.cpp Source File

: m_Workbench(workbench)

( parent,

, caption, pos,

, style );

( wxWindow* parent, wxWindowID

,

wxString& caption,

wxPoint& pos,

wxSize&

,

style )

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

wxFrame::Create(parent,

, caption, pos,

, style);

wxVisualAttributes attr = wxPanel::GetClassDefaultAttributes();

(attr.colBg != wxNullColour)

SetOwnBackgroundColour(attr.colBg);

wxWindow::TransferDataFromWindow();

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemFrame1->SetSizer(itemBoxSizer2);

wxBoxSizer* itemBoxSizer3 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer3, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxStaticText* itemStaticText4 =

wxStaticText( itemFrame1, wxID_STATIC,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer3->Add(itemStaticText4, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

itemBoxSizer3->Add(

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

=

wxCheckBox( itemFrame1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer3->Add(

, 0, wxALIGN_CENTER_VERTICAL|wxALL, 5);

itemBoxSizer3->Add(

, 0, wxALIGN_CENTER_VERTICAL | wxALL, 5);

wxButton* itemButton1 =

wxButton( itemFrame1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer3->Add(itemButton1, 0, wxALIGN_CENTER_VERTICAL | wxALL, 5);

wxWindow::InitDialog();

SFeatTableParams {

showProteinFeats;

SFeatTableParams(

protein_id,

src_feat,

show_prot_feats)

showProteinId(protein_id),

showSrcFeature(src_feat),

showProteinFeats(show_prot_feats) {}

vector<CSeq_feat_Handle> handles;

(TConstScopedObjects::const_iterator it =

.begin(); it !=

.end(); ++it) {

handles.push_back(fh);

(handles.empty() && !only_na && !

) {

* loc =

*

(it->object.GetPointer());

(!

.showProteinId) {

(!

.showSrcFeature) {

(!handles.empty()) {

(vector<CSeq_feat_Handle>::const_iterator it = handles.begin(); it != handles.end(); ++it) {

(!

.filename.empty()) {

(

<<

.filename);

(

std::exception& e) {

(

<<

);

err_msg =

;

(!errMsg.empty()) {

err_msg +=

;

sel_srv->GetActiveObjects(

);

.filename = path;

CFeatureTblFr()

Constructors.

virtual void OnJobResult(CObject *result, CJobAdapter &adapter)

CGenericPanel * m_GenericPanel

static bool ShowToolTips()

Should we show tooltips?

virtual void LoadSettings()

virtual void OnJobFailed(const string &, CJobAdapter &adapter)

virtual void SetRegistryPath(const string &reg_path)

void OnCloseWindow(wxCloseEvent &event)

void SetWorkDir(const wxString &workDir)

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

~CFeatureTblFr()

Destructor.

void x_RefreshTable(const string &path=kEmptyStr)

void Init()

Initialises member variables.

wxCheckBox * m_ProteinFeats

void OnRefreshClick(wxCommandEvent &event)

void CreateControls()

Creates the controls and sizers.

virtual void SaveSettings() const

CRef< CJobAdapter > m_JobAdapter

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

bool Create(wxWindow *parent, wxWindowID id=ID_CFEATURETBLFR, const wxString &caption=_("Feature Table"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(700, 600), long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX)

CFlatFileConfig & SetShowPeptides(bool val=true)

CFlatFileConfig & SetHideSourceFeatures(bool val=true)

CFlatFileConfig & SetHideProteinID(bool val=true)

CFlatFileConfig & SetShowContigFeatures(bool val=true)

CFlatFileConfig & SetShowContigSources(bool val=true)

CFlatFileConfig & SetShowFtablePeptides(bool val=true)

void SetFormatFTable(void)

void Generate(const CSeq_entry_Handle &entry, CFlatItemOStream &item_os, const multiout &={})

SAnnotSelector & SetAnnotSelector(void)

static string GetSeqFeatText(const CMappedFeat &feat, CScope &scope, const CFlatFileConfig &cfg, CRef< feature::CFeatTree > ftree=null)

void SetHelpUrl(const wxString &url)

void SetText(const wxString &text)

void SetWorkDir(const wxString &workDir)

void SetFindMode(int mode)

CRegistryWriteView GetWriteView(const string &section)

get a read-write view at a particular level.

static CGuiRegistry & GetInstance()

access the application-wide singleton

CRegistryReadView GetReadView(const string &section) const

get a read-only view at a particular level.

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

class CRegistryReadView provides a nested hierarchical view at a particular key.

int GetInt(const string &key, int default_val=0) const

access a named key at this level, with no recursion

bool GetBool(const string &key, bool default_val=false) const

void Set(const string &key, int val)

access a named key at this level, with no recursion

namespace ncbi::objects::

Interface for testing cancellation request in a long lasting operation.

IWorkbench is the central interface in the application framework.

IMPLEMENT_CLASS(CFloatingFrame, CFloatingFrameBaseClass) const static long kFloatFrameStyle

CFloatingFrame.

static const char * kCaseSensitive

static const char * kShowProteinFeats

static bool s_Create5ColFeatTable(SFeatTableParams &input, string &output, string &error, ICanceled &canceled)

static const char * kShowTranscriptID

static const char * kShowSources

static SQLCHAR output[256]

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

const string & GetMsg(void) const

Get message string.

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

void Info(CExceptionArgs_Base &args)

CIRef< T > GetServiceByType()

retrieves a typed reference to a service, the name of C++ type is used as the name of the service.

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

objects::CSeq_entry_Handle GetTopSeqEntryFromScopedObject(SConstScopedObject &obj)

void NcbiWarningBox(const string &message, const string &title="Warning")

specialized Message Box function for reporting non-critical errors

void NcbiErrorBox(const string &message, const string &title="Error")

specialized Message Box function for reporting critical errors

vector< SConstScopedObject > TConstScopedObjects

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CSeq_feat_Handle GetSeq_featHandle(const CSeq_feat &feat, EMissing action=eMissing_Default)

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual bool IsCanceled(void) const =0

IO_PREFIX::ofstream CNcbiOfstream

Portable alias for ofstream.

where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is smart and slim</td> n<td> orig</td> n</tr> n<tr> n<td> last_modified</td> n<td> optional</td> n<td> Integer</td> n<td class=\"description\"> The blob last modification If provided then the exact match will be requested with n the Cassandra storage corresponding field value</td> n<td> Positive integer Not provided means that the most recent match will be selected</td> n<td></td> n</tr> n<tr> n<td> use_cache</td> n<td> optional</td> n<td> String</td> n<td class=\"description\"> The option controls if the Cassandra LMDB cache and or database should be used It n affects the seq id resolution step and the blob properties lookup step The following n options are BIOSEQ_INFO and BLOB_PROP at all

bool FocusedOnNucleotides(TConstScopedObjects &objects, const objects::CSeq_entry_Handle &tse)

void GetViewObjects(IWorkbench *workbench, TConstScopedObjects &objects)

bool FocusedOnAll(TConstScopedObjects &objects, const objects::CSeq_entry_Handle &tse)

void ReportUsage(const wxString &dialog_name)

Report opening & accepting events in the editing package.

const struct ncbi::grid::netcache::search::fields::SIZE size

wxString ToWxString(const string &s)

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