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NCBI C++ ToolKit: include/gui/widgets/seq_graphic/feature_track.hpp Source File

eLayout_Default = eLayout_AdaptiveLayered

eIcon_Score = eIcon_MaxTrackIconID + 1

ELayout LayoutStrToValue(

& layout);

& LayoutValueToStr(ELayout layout);

SetAnnot(

& annot);

ExcludeAnnotName(

& annot);

SetFeatSubtype(

subtype);

SetLayout(ELayout layout);

()

{

m_Annot;}

x_LoadFeatures(

& range,

feat_limit);

x_NeedHighlight(

* glyph)

;

curr_level,

compact_mode);

&

,

is_overview);

x_OnContentIconClicked();

x_OnLayoutIconClicked();

x_OnLayoutPolicyChanged();

x_AdjustFeatureLayout();

x_HasLinkedFeats()

;

m_MaxAdaptiveHeight = 400;

TTrackMap CreateTracks(

SExtraParams& params = SExtraParams(),

TAnnotMetaDataList& src_annots = TAnnotMetaDataList())

;

GetMatchedAnnots(

TAnnotMetaDataList& src_annots,

TAnnotNameTitleMap& out_annots)

;

GetSettings(

& profile,

TKeyValuePairs& settings,

GetExtensionIdentifier()

;

GetExtensionLabel()

;

x_GetSettings(

TKeyValuePairs& settings,

* track_proxy,

is_intron_track)

;

CAppJobNotification Notification send by CAppJobEventTranslator.

CDataTrack - a abstract base class for layout tracks which need to deal with background data retrieva...

virtual CRef< CSGGenBankDS > GetDataSource()=0

Method for accessing the data source.

virtual void x_UpdateData()=0

update track content.

virtual void x_OnJobCompleted(CAppJobNotification &notify)=0

static const CTrackTypeInfo & GetTypeInfo()

virtual bool NeedBackgroundInit() const

Background track initialization.

CFeatureTrack::ELayout m_DefaultLayout

ELinkedFeatDisplay m_DefaultLinkedFeat

virtual const CTrackTypeInfo & GetThisTypeInfo() const

virtual bool UnderstandLevel() const

Have any concept of level.

virtual bool SupportsExportToAsn1() const

virtual string GetAnnot() const

int m_FeatLimits

maximal number of features shown in on track.

int GetFeatSubtype() const

virtual void GetFeatSubtypes(set< objects::CSeqFeatData::ESubtype > &subtypes) const

CRef< CLayeredLayout > m_GroupLayered

virtual CRef< CSGGenBankDS > GetDataSource()

CFeatureTrack inline methods.

CRef< CColumnLayout > m_Column

CSeqGraphicConfig::TFeatSubtype m_Subtype

CRef< CSGFeatureDS > m_DS

objects::SAnnotSelector m_FeatSel

virtual bool CheckRange(TSeqRange range, string &, size_t &)

void SetLayout(ELayout layout)

CRef< CLayeredLayout > m_LinkedGroup

CRef< CCompactLayout > m_Compact

bool x_HasLinkedFeats() const

CRef< CSimpleLayout > m_GroupSimple

int m_MaxRow

Maximal number of feature rows in one feature track.

size_t m_HistThreshold

An independent histogram threshold used by SViewer.

CFeatureTrack(const CFeatureTrack &)

CFeatureTrack & operator=(const CFeatureTrack &)

CRef< CBoundaryParams > m_GroupConfig

static CTrackTypeInfo m_TypeInfo

@ eLayout_ExpandedColumn

show all features with column layout

@ eLayout_AdaptiveInline

adaptively switch between packed and inline

@ eLayout_Packed

pack all feature into a histogram

@ eLayout_ExpandedLayered

show all features with layered layout

@ eLayout_OneLine

pack all feature into one line

@ eLayout_AdaptiveLayered

adaptively switch between packed and layered

@ eLayout_ExpandedByPos

show all features, one per row sorted by pos

@ eLayout_None

unassigned layout

@ eLayout_ExpandedBySize

one feature per row sorted by size

ELinkedFeatDisplay m_LinkedFeat

virtual bool BypassStage1()

int m_CompactThreshold

Feature number threshold between compact mode and non-compact mode.

virtual const CTrackTypeInfo & GetTypeInfo() const

CJobResultBase – the basic job result class holding a token.

CLayoutGroup is a container of CSeqGlyphs (layout objects).

virtual void x_SaveSettings(const string &preset_style)

save the track settings to a profile string.

virtual void x_LoadSettings(const string &preset_style, const TKeyValuePairs &settings)

load the track settings.

virtual void x_OnIconClicked(TIconID id)

Mouse left-click event handler on an icon.

virtual string GetFullTitle() const

get a more meaningful title.

CLinkedFeatsGroup is a container class contains related features.

CRenderingContext offers the basic context and utility methods for rendering layout objects in featur...

CSGJobResult – the data structure holding the seqgraphic job results.

class CSeqGlyph defines an interface that wraps a rectilinear abstract object.

list< CRef< CSeqGlyph > > TObjects

int TFeatSubtype

we use int instead of CSeqFeatData::ESubtype for two reasons:

CTrackTypeInfo - holds description of a layout track type.

IAsn1Generator interface for tracks capable of generating an ASN1 seq_entry for their data.

virtual void GenerateAsn1(objects::CSeq_entry &seq_entry, TSeqRange range)=0

IExtension IExtension interface represents an abstract pluggable component.

ISGDSManager is seqgraphic data source manage that serves as an data source context.

ITrackConfigurable interface for tracks that are configurable.

map< string, string > TKeyValuePairs

iterator_bool insert(const value_type &val)

objects::CSeqFeatData::ESubtype GetFeatSubtype(const string &feat_type)

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

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