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NCBI C++ ToolKit: include/objtools/edit/feature_propagate.hpp Source File

stop_at_stop =

,

cleanup_partials =

,

merge_abutting =

,

stop_at_stop =

,

cleanup_partials =

,

merge_abutting =

,

expand_over_gaps =

,

vector<CRef<CSeq_feat> > PropagateAll();

vector<CRef<CSeq_feat> > PropagateAllReportFailures(

eFeaturePropagationProblem_None = 0,

eFeaturePropagationProblem_AnticodonLocation

x_PropagateCds(

& feat,

& targetId,

origIsPartialStart);

x_CdsStopAtStopCodon(

& cds);

x_CdsCleanupPartials(

& cds,

origIsPartialStart);

IsOrdered(

&loc);

CSynonymMapper(CFeaturePropagator *e)

virtual ~CSynonymMapper(void)

virtual CSeq_id_Handle GetBestSynonym(const CSeq_id &id)

CMessageListener_Basic * m_MessageListener

CFeaturePropagator & operator=(const CFeaturePropagator &value)

map< CObject_id::TId, CObject_id::TId > m_FeatIdMap

CConstRef< CSeq_align > m_Alignment

@ eFeaturePropagationProblem_CodeBreakLocation

@ eFeaturePropagationProblem_FeatureLocation

CSynonymMapper m_synonym_mapper

bool m_CdsStopAtStopCodon

bool m_CdsCleanupPartials

CFeaturePropagator(const CFeaturePropagator &value)

Default implementation of IMessageListener: collects all messages posted.

namespace ncbi::objects::

Interface for mapping IDs to the best synonym.

Include a standard set of the NCBI C++ Toolkit most basic headers.

int TSignedSeqPos

Type for signed sequence position.

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

@ eGetId_Best

return the "best" gi (uses FindBestScore(), with CSeq_id::CalculateScore() as the score function

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

#define NCBI_XOBJEDIT_EXPORT

const GenericPointer< typename T::ValueType > T2 value

IMessage/IMessageListener interfaces and basic implementations.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

#define row(bind, expected)

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