Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/feature__panel_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq_graphic/feature_panel.cpp Source File

[] = { 3, 6, 9 };

(

);

, m_SelFeatures(

)

, m_SelCDSFeatures(

)

, m_IsMultiLevel(

)

, m_IconTexInitialized(

)

, m_CgiMode(cgi_mode)

, m_ImageInfo(

)

, m_AssemblyLoaded(

)

,

,

,

,

));

,

,

,

,

));

,

,

,

,

));

,

,

,

,

));

,

,

,

));

,

,

,

,

));

update_level_3 =

;

( !(*iter)->GetShown() )

;

( !track)

;

track->

(layout_only);

}

(level < 2) {

track->

(layout_only);

update_level_3 =

;

}

(update_level_3) {

(curr_range != (*iter)->GetVisitedRange()) {

(*iter)->SetVisitedRange(curr_range);

( !layout_only ) {

glyph.

(

);

tmsContext =

;

useEutils = reg.

(

,

,

);

CTrackCounter() : m_Count(0) {}

GetCount()

{

m_Count; }

CTrackCounter counter;

(counter.GetCount() == 0) {

wxMessageBox(

(

),

(

), wxOK | wxICON_EXCLAMATION);

showDialog =

;

wxRichMessageDialog dlg(

,

(

),

(

), wxOK | wxICON_EXCLAMATION);

dlg.ShowCheckBox(

(

));

(dlg.IsCheckBoxChecked())

(wxMessageBox(

(

),

(

), wxOK | wxCANCEL) == wxOK)

(seqId && !seqId->

()) {

}

(

);

list<CRef<objects::CGC_Assembly> > assemblies;

.assign(assemblies.begin(), assemblies.end());

acc =

->GetAccession();

Track(proxy, container, visible);

Track(proxy, container, visible);

regPath = path + profile +

;

.GetReadView(regPath).GetTopKeys(keys);

(track && track_key == track->

()) {

update_level_3 =

;

( !(*iter)->GetShown() )

;

( !cont_track)

;

update_level_3 =

;

}

(update_level_3) {

(curr_range != (*iter)->GetVisitedRange()) {

cont_track->

(

);

->SetHorzColor(h_color);

->SetVertColor(v_color);

gl.

(GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA);

gl.

(GL_LINE_SMOOTH);

glHint(GL_LINE_SMOOTH_HINT, GL_NICEST);

kInitTrackStr =

;

x, rcm.

() - 4.0,

,

);

(assembliesResult) {

( !

->m_Annots.empty() ) {

(!cont)

;

(preset_style.empty()) {

rect.

(center_x - w, bottom, center_x + w, bottom - h);

gl.

(0.83f, 0.83f, 0.83f, 0.9f);

= 3.141592653589793238463f / numSegments / 2;

gl.

(GL_TRIANGLE_STRIP);

(

= 0;

< numSegments - 1; ++

) {

sina = ry*sin(

), cosa = rx*cos(

);

icon_num =

.size();

(

idx = 0; idx < icon_num; ++idx) {

gl.

(GL_SRC_ALPHA, GL_ONE_MINUS_SRC_ALPHA);

styles[id_base] =

(

);

styles[id_base + 1] =

(

);

wxMenuItem* item = menu.AppendRadioItem(iter->first, iter->second);

}

(

== 0) {

wxMenuItemList& item_list = menu.GetMenuItems();

(wxMenuItemList, iter, item_list) {

((*iter)->IsChecked()) {

= (*iter)->GetId() - id_base;

(

?

:

));

items[id_base] =

(

);

items[id_base + 1] =

(

);

(TMenuItems, iter, items) {

wxMenuItem* item = menu.AppendRadioItem(iter->first, iter->second);

wxMenuItemList& item_list = menu.GetMenuItems();

(wxMenuItemList, iter, item_list) {

& new_color =

(items[(*iter)->GetId()]);

(

<<

<<

id_base = 10000;

items[id_base] =

(

);

items[id_base + 1] =

(

);

items[id_base + 2] =

(

);

(TMenuItems, iter, items) {

wxMenuItem* item = menu.AppendRadioItem(iter->first, iter->second);

wxMenuItemList& item_list = menu.GetMenuItems();

(wxMenuItemList, iter, item_list) {

& new_size =

(items[(*iter)->GetId()]);

(

<<

<<

id_base = 10000;

items[id_base] =

(

);

items[id_base + 1] =

(

);

items[id_base + 2] =

(

);

items[id_base + 3] =

(

);

items[id_base + 4] =

(

);

(TMenuItems, iter, items) {

wxMenuItem* item = menu.AppendRadioItem(iter->first, iter->second);

wxMenuItemList& item_list = menu.GetMenuItems();

(wxMenuItemList, iter, item_list) {

& new_decor =

(items[(*iter)->GetId()]);

(

<<

<<

id_base = 10000;

items[id_base] =

(

);

items[id_base + 1] =

(

);

items[id_base + 2] =

(

);

items[id_base + 3] =

(

);

(TMenuItems, iter, items) {

wxMenuItem* item = menu.AppendRadioItem(iter->first, iter->second);

(iter->second ==

(old_label_pos)) {

wxMenuItemList& item_list = menu.GetMenuItems();

(wxMenuItemList, iter, item_list) {

& new_label_pos =

(items[(*iter)->GetId()]);

((*iter)->IsChecked() && new_label_pos != old_label_pos) {

(

<<

<<

old_label_pos <<

<< new_label_pos);

->IgnoreFeatureStrand();

((*iter)->GetOrder() >=

)

= (*iter)->GetOrder() + 1;

*

(t_iter->GetPointer());

( !factory )

cont_track;

t_proxy->GetSubkey(), t_proxy->GetFilter(), t_proxy->GetSortBy());

extra_params.

= t_proxy->GetSubTracks();

( !tracks.

()) {

feats_track->SetProxy(t_proxy);

(defaultProxies.empty())

{

t1->

() < t2->GetName(); };

defaultProxies.sort(NameComp);

(!proxies.empty())

proxies.sort(NameComp);

(

sit = defaultProxies.begin(), dit = proxies.begin(); sit != defaultProxies.end() || dit != proxies.end();) {

(dit != proxies.end() && (sit == defaultProxies.end() || (*dit)->GetName() < (*sit)->GetName()))

dit = proxies.erase(dit);

(dit != proxies.end() && sit != defaultProxies.end() && (*dit)->GetName() == (*sit)->GetName())

(sit != defaultProxies.end() && (dit == proxies.end() || (*sit)->GetName() < (*dit)->GetName())) {

dit = proxies.insert(dit, (*sit)->Clone());

=

->GetData().GetStr();

string::size_type sb =

.find_first_not_of(

);

(sb == string::npos) {

string::size_type se =

.find_last_not_of (

);

(se == string::npos) {

se =

.size() - 1;

(list<string>, iter, toks) {

<<

<< e.

());

vector<string> icons;

(!icons.empty()) {

(

&& it : icons) {

(kIconName2Id.count(icon) != 0)

requested_icons.

(kIconName2Id[icon]);

(!requested_icons.

()) {

[&](

&

) { return requested_icons.count(info.m_Id) == 0; }),

((*iter)->IsEmpty()) {

(

& c : p->GetChildren())

c->SetOrder(++order);

( !g_conf )

;

(

= 2;

>= 0; --

) {

regPath = path + profile +

;

.GetReadView(regPath).GetTopKeys(keys);

view =

.GetWriteView(regPath);

icon_image_registered =

;

( !icon_image_registered && !

) {

*

(iter->second.GetPointer());

icon_image_registered =

;

vector<bool> has_line(vp_max-vp_min,

);

total_glyph = 0;

( !glyph )

;

( !glyph )

;

glyph->GetPosInWorld(top_left);

*

(glyph.GetPointer());

(x>=vp_min && x<vp_max && !has_line[x-vp_min] &&

(opt, total_glyph, all_pos, curr.

(), line_y)) {

has_line[x-vp_min] =

;

(x>=vp_min && x<vp_max && !has_line[x-vp_min] &&

(opt, total_glyph, all_pos, curr.

()+1, line_y)) {

has_line[x-vp_min] =

;

need_line =

;

= all_pos.count(pos) > 1 ? c_dark : c_light;

need_line = all_pos.count(pos) == 1;

need_line = all_pos.count(pos) >= 2;

need_line = all_pos.count(pos) == total;

.Darken(0.1f);

*

(glyph.GetPointer());

( !feat )

;

(length < 2)

;

logRange =

(length);

logRange = ceil(logRange) - 1;

step = pow(10.0, logRange);

base_step = step;

tick_num = length / base_step;

(tick_num < 8) {

base_step = step /

[

++];

tick_num = length / base_step;

end = (

)floor(

- 1);

(

= (

)ceil(

);

>= end;

-= grid_step) {

(((

+ 1) < visible_range.GetFrom()) || ((

+ 1) > visible_range.GetTo()))

end = (

)ceil(

+ 1);

(

= (

)floor(

);

<= end;

+= grid_step) {

((

< visible_range.GetFrom()) || (

> visible_range.GetTo()))

max_step)

((base_step >= min_step && base_step <= max_step) || (min_step == max_step))

Power =

(base_step);

= ceil(Power) -1;

pow10P = pow(10.0,

);

= base_step / pow10P;

oldK = 1, K = 1, Index = 0;

(base_step < min_step)

minK = min_step / pow10P;

K = oldK *

[Index++];

K = oldK = oldK * 10;

base_step = pow10P * K;

}

(base_step > max_step) {

maxK = pow10P / max_step;

K = oldK *

[Index++];

K = oldK = oldK * 10;

base_step = pow10P / K;

TDisplayLevels::iterator iter =

& track_name,

( !factory )

cont_track;

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

void remove_if(Container &c, Predicate *__pred)

CAppJobNotification Notification send by CAppJobEventTranslator.

bool GetAssemblies(const string &seqAcc, list< CRef< objects::CGC_Assembly > > &assAcc)

static CAssemblyCache & GetInstance()

void SetCategory(const string &category)

virtual void Update(bool layout_only)

Update content and layout including the bounding box.

virtual void SetRegistryPath(const string &path)

CExternalLayoutTrack – the layout track for holding and visualizing the external graphical views' vis...

virtual const objects::CSeq_loc & GetLocation(void) const

access the position of this object.

TModelUnit GetBarCenter() const

virtual TSeqRange GetRange(void) const

get the total range of this object.

virtual const TIntervals & GetIntervals(void) const

access sub-intervals (if any).

void SetTMSContext(const string &tms_context)

void SetDSContext(ISGDataSourceContext *ds_context)

void GetAssemblies(const string &seqAcc)

void SetUseEUtils(bool use)

void ClearMetaDataJobId()

bool IsMetaDataJob(TJobID id) const

CFeaturePanelDS inline methods.

void SetAssembly(const string &assembly)

void SetRenderingContext(CRenderingContext *r_cntx)

const string & GetAssembly() const

void GetAnnotMetaData(const string &desc)

retrieve a list of annotations with their meta data.

void x_RenderFeatureGrid() const

void x_ConfigureSubtracks_Recursive(CTrackContainer *parent, const TTrackProxies &proxies, int level)

Create all the exsiting layout tracks.

CRegularGridGen m_Gen

graphical grid.

CIRef< ISGDataSourceContext > m_DSContext

void x_OnLayoutIconClicked()

void x_LoadSettings()

Load settings for feature panel.

void x_OnColorIconClicked()

virtual bool HitTestHor(TSeqPos x, const CObject *obj)

const TSelectedGlyphs * m_SelCDSFeatures

IServiceLocator * m_ServiceLocator

double x_CalcGridStep(double base_step, double min_step, double max_step) const

void x_RenderHairLineSelections() const

void x_ConfigureTracks(bool makeContainersVisible=false)

reset the track status to be ready for reconfiguring layout tracks.

vector< TLevel > TDisplayLevels

bool m_CgiMode

special flag indicating if it is in cgi mode.

void x_OnSizeIconClicked()

bool x_GetShowDisplayLevel(TLevel level) const

Only meaningful if Multilevel is true.

const TSelectedGlyphs * m_SelFeatures

void x_OnAssemblyLoaded(const list< CRef< objects::CGC_Assembly > > &assemblies)

CTrackContainer * x_ConfigureSubtracks(CTrackContainer *parent, const CTrackProxy *param, int level, const set< string > &usedFeatureSubkeys)

void x_SetShowDisplayLevel(TLevel level, bool show)

SConstScopedObject m_InputObj

set< string > GetAnnotNames()

bool x_NeedSpecialGrid() const

need show special grid for the selected cds features.

void SetInputObject(SConstScopedObject &obj)

vector< CRef< objects::CGC_Assembly > > m_Assemblies

virtual void x_Draw() const

The default renderer for this layout object.

virtual void x_OnIconClicked(TIconID id)

override method in CLayoutTrack to handle speical cases.

CRegularGridRenderer m_Grid

TAnnotMetaDataList m_NAData

CFeaturePanel(CRenderingContext *r_cntx, bool cgi_mode)

vector< CMappedFeatOrObject > m_search_results

static CTrackTypeInfo m_TypeInfo

bool m_IconTexInitialized

flag indicating whether icon textures have been created.

string GetCurrentAssembly() const

void x_OnDecorationIconClicked()

virtual void Update(bool layout_only)

Update content and layout including the bounding box.

virtual bool x_IsJobNeeded(CAppJobDispatcher::TJobID id) const

virtual CRef< CSeqGlyph > HitTest(const TModelPoint &p)

Hit testing.

void LoadDefaultTracks()

Reset tracks to the original default track list.

CMappedFeatOrObject FindText(const string &text, bool match_case)

virtual void OnTrackInitFinished(const CLayoutTrack *sender)

TImageInfo * m_ImageInfo

Information about image that can be returned to client.

CRef< CExternalLayoutTrack > m_ExtLayoutTrack

void SetExternalGlyphs(const CSeqGlyph::TObjects &objs)

virtual void x_GetTBRect(TModelRect &rect) const

Get title bar rectange exclude top margin.

void x_InitNATracks(bool makeContainersVisible)

virtual void x_RenderTitleBar() const

Method for rendering the track title bar.

void SetAssembly(const string &assembly)

void ShowTrack(const string &track_key)

Turn on an existing track.

void ShowConfigureTracksDlg(const string &category)

void SetTrackConfig(const TTrackSettingsSet &settings_set)

void x_OnLabelIconClicked()

@ eIcon_Color

color theme

@ eIcon_Label

feature label position

@ eIcon_Decoration

feature decoration

CRef< CTrackContainer > x_CreateLevelTrack(int level, int id, const string &track_name, bool shown)

create track container for a given annotation level.

bool x_DrawHairLine(int opt, size_t total, const multiset< TSeqPos > &all_pos, TSeqPos pos, TModelUnit line_y) const

string m_ConfigKey

Base regitry key for panel setting and tracks default "GBPlugins.SeqGraphicFeatPanel" is for SV MSA s...

virtual void x_OnJobCompleted(CAppJobNotification &notify)

TDisplayLevels m_DisplayLevels

void x_SaveSettings()

Save settings for feature panel.

void x_StartAssemblyJob()

virtual void ResetSearch()

void SetNonAsnInput(const INonAsnTrackData &data)

list< TTrackSettings > TTrackSettingsSet

TTrackProxies m_TrackSettings

initial track layout settings.

list< CWeakRef< CSeqGlyph > > TSelectedGlyphs

virtual const CTrackTypeInfo & GetTypeInfo() const

virtual bool x_Empty() const

list< CRef< objects::CGC_Assembly > > m_Assemblies

virtual void x_UpdateBoundingBox()

Update the bounding box assuming children's sizes are fixed if any.

virtual CRef< CSeqGlyph > HitTest(const TModelPoint &p)

Hit testing.

virtual bool HitTestHor(TSeqPos x, const CObject *obj)

void SetObjects(const CLayoutGroup::TObjectList &objs)

CLayoutGroup & SetGroup()

const CLayoutGroup::TObjectList & GetChildren() const

virtual void Update(bool layout_only)

Update content and layout including the bounding box.

const CLayoutGroup & GetGroup() const

CLayoutGroup::TObjectList & SetChildren()

CRef< CSimpleLayout > m_Simple

void SetLayoutPolicy(ILayoutPolicy *policy)

Set policy on how to deploy the layout of its children.

static const string kDecimalDot

static CGuiRegistry & GetInstance()

access the application-wide singleton

void UpdateLayout()

update group's bounding box only, and its parent layout.

void SetTrackAttr(TTrackAttrFlags flags)

int m_IndentLevel

track hierachy indentation level.

void x_DeregisterIcon(TIconID id)

deregister an icon if already registered.

void SetShowTitle(bool flag)

void SetTitle(const string &label, const string &default_title=NcbiEmptyString)

@ eIcon_Content

icon id for setting content

@ eIcon_Layout

icon id for setting layout style

@ eIcon_Help

icon id for track help

bool GetShowTitle() const

static bool InitIconTextures()

initialize OpenGL ttexture objects for icons.

ILayoutTrackHost * m_LTHost

Top level host owning the tracks.

virtual void SetComments(const string &)

set comments.

bool m_ShowFrame

need to draw frame, not title

void x_OnLayoutChanged()

update the layout.

TTrackAttrFlags m_Attrs

various track attributes

virtual void x_RenderIcon(TIconID id, bool highlighted, bool lite_version=false) const

Render track icons.

TIcons m_Icons

registered icon info

void LoadProfile(const string &profile_str)

set track profile and load settings.

@ fFrameVisible

track frame will be rendered when triggered.

@ fShowAlways

always be rendered even for an empty track.

@ fFullTrack

track occupying the full horizontal screen.

@ fShowIcons

Track has control icons at the bottom.

const string & GetProfile() const

bool x_HitTitleBar(const TModelPoint &p) const

hit the title bar?.

void SetMsg(const string &msg)

static void RegisterIconImage(const TIconAlias &key, const string &img_file)

register the image for an icon.

int m_HighlightedIcon

the highlighted icon index

CConstRef< CSeqGraphicConfig > x_GetGlobalConfig() const

Method for getting global configuration from rendering context.

void SetProfile(const string &preset_style)

CLayoutTrack inline method implmentation.

CRef< CSeqGraphicConfig > m_gConfig

global configuration.

int TIconID

use int as TIconID instead of EIconID.

virtual void SetHighlights(const string &)

string m_Id

track identifier

static void RegisterCommonIconImages()

register images for the common icons.

void x_RegisterIcon(const SIconInfo &icon)

register track icons.

static CNcbiApplication * Instance(void)

Singleton method.

CNcbiOstrstreamToString class helps convert CNcbiOstrstream to a string Sample usage:

class CRegistryReadView provides a nested hierarchical view at a particular key.

bool GetBool(const string &key, bool default_val=false) const

list< SKeyInfo > TKeys

retrieve information about all keys in the registry

string GetString(const string &key, const string &default_val=kEmptyStr) const

CConstRef< objects::CUser_field > GetField(const string &key) const

provide raw field access

CRef< objects::CUser_field > SetField(const string &key)

provide raw field access

void Set(const string &key, int val)

access a named key at this level, with no recursion

bool DeleteField(const string &key)

delete the specified field (and any of its subfields) from this view and from its registry.

CRenderingContext offers the basic context and utility methods for rendering layout objects in featur...

bool IsHorizontal() const

void TextOut(const CGlTextureFont *font, const char *text, TModelUnit x, TModelUnit y, bool center, bool adjust_flip=true) const

TModelUnit GetVisibleFrom() const

const TSeqRange & GetVisSeqRange() const

CGlPane * GetGlPane()

inline method implementations

const TModelUnit & GetOffset() const

const TModelRange & GetVisibleRange() const

void SetSelectionColor(const CRgbaColor &c)

void DrawLine(TModelUnit x1, TModelUnit y1, TModelUnit x2, TModelUnit y2) const

TModelUnit GetVisibleTo() const

const TModelUnit & GetScale() const

bool IsSkipControls() const

TModelUnit SeqToScreen(const TModelUnit &size) const

convert from sequence positions to screen pixels

TModelUnit SeqToScreenXInModelUnit(const TModelUnit &size) const

TModelUnit ScreenToSeq(const TModelUnit &size) const

convert from screen pixels to sequence positions

bool IsFlippedStrand() const

void SetSelLabelColor(const CRgbaColor &c)

void DrawBackground(const TModelRect &rcm, TModelUnit border) const

void AdjustToOrientation(TModelUnit &x) const

class CRgbaColor provides a simple abstraction for managing colors.

static const string & DefTrackProfile()

static CRegistryReadView GetReadView(const CGuiRegistry &reg, const string &base_key, const string &curr_key, const string &def_key1="", const string &def_key2="", const string &def_key3="")

read/readwrite view creation helper methods.

static CRegistryWriteView GetWriteView(CGuiRegistry &reg, const string &base_key, const string &curr_key, const string &def_key1="", const string &def_key2="", const string &def_key3="")

static const string & LayoutKey()

static const string & TrackProfileKey()

static const string & UserSettingPrefix()

static const string & DefLayout()

bool IsJobNeeded(TJobID job_id) const

objects::CScope & GetScope(void) const

Get the scope from the handle.

void SetJobListener(CEventHandler *listener)

Set JobDispatcher listener.

objects::CBioseq_Handle & GetBioseqHandle(void)

Get the underlying bioseq handle.

void SetHighlightsColor(const CRgbaColor &hl_color)

CRenderingContext * m_Context

the rendering context

virtual void SetLeft(TModelUnit l)

virtual TModelUnit GetTop() const

virtual void Update(bool)

Update content and layout including the bounding box.

virtual void SetTop(TModelUnit b)

void Draw() const

render the layout.

void GetPosInWorld(TModelPoint &pos) const

Get top left position in world coordinate.

virtual TModelUnit GetBottom() const

list< CRef< CSeqGlyph > > TObjects

@ eDepth_nolimit

adaptive and no depth limitation,

@ eDepth_unknown

sequence-specific, up to app to decide

bool GetShowVertGrid() const

const CRgbaColor & GetSelectionColor() const

const string & GetLayout() const

const string & GetLabelPos() const

const string & GetSizeLevel() const

void SetLabelPos(const string &label_pos)

bool GetShowHorzGrid() const

void SetDecorateStyle(const string &style)

const CRgbaColor & GetVerticalGridColor() const

const CRgbaColor & GetSelHairlineDownColor() const

void SetTrackProfile(const string &profile)

const CRgbaColor & GetSelHairlineManyColor() const

void IgnoreFeatureStrand()

Set show feature strand indicator to false for all features.

void SetColorTheme(const string &theme)

bool GetShowDownwardHairlines() const

const string & GetDecorateStyle() const

const string & GetColorTheme() const

void LoadSettings()

update the cached settings.

const CRgbaColor & GetSelHairlineOneColor() const

int GetHairlineOption() const

void SaveSettings(bool clear_themes=false)

const CRgbaColor & GetSelLabelColor() const

const CRgbaColor & GetHorizontalGridColor() const

void SetSizeLevel(const string &size)

Simple class to represent hairlines drawn on top of seqgraphic images.

void ShowDownwardHairline(bool b)

void SetBottomColor(const CRgbaColor &c)

class CStaticArrayMap<> provides access to a static array in much the same way as CStaticArraySet<>,...

void SetShown(bool shown)

void SetCategory(const string &cat)

list< CRef< CTempTrackProxy > > TTrackProxies

bool GetShowTitle() const

const string & GetKey() const

const string & GetHighlightsColor() const

static void LoadFromRegistry(TTrackProxies &proxies, const string &path, bool isMergeWithExisting=false)

if isMergeWithExisting is true, then load should skip all registry tracks that have keys as in the al...

const string & GetHighlights() const

void SetSubcategory(const string &scat)

static void SaveToRegistry(const TTrackProxies &proxies, const string &path)

const TTrackProxies & GetChildren() const

const string & GetName() const

const string & GetComments() const

static void SetTrackConfig(TTrackProxies &t_settings, const TTrackSettingsSet &in_settings, int order_offset=0)

Reset the track configuration with input settings.

const ILayoutTrackFactory * GetTrackFactory(const string &key) const

static void GetUsedFeatureKeys(set< string > &subkeys, const TTrackProxies &proxies)

static const CTrackTypeInfo & GetTypeInfo()

CTrackContainer - a track container in the form of layout track.

virtual void x_OnJobCompleted(CAppJobNotification &notify)

void Traverse(Tr &&tr, bool visible)

virtual void x_UpdateData()

update track content.

ILayoutTrackFactory::TAnnotMetaDataList TAnnotMetaDataList

void AddTrackProxy(CTempTrackProxy *proxy, bool upgateMsg=true)

Add a track proxy.

virtual void DeleteAllJobs()

bool IsTrackInitDone() const

CTrackProxy * AddNewTrack(const string &track_key, const CTrackProxy::TAnnots &annots, const string &disp_name, const string &name="", const string &filter="", const string &sub_key="")

Add a new empty track proxy.

void SetAdaptive(bool flag)

CTrackConfigManager * GetConfigMgr()

int GetAnnotLevel() const

void SetAnnotLevel(int level)

void ClearTracks()

Remove all tracks.

virtual void x_OnIconClicked(TIconID id)

override method in CLayoutTrack to handle speical cases.

void x_MakeTopLevelTracks(CGlyphContainer *featurePanel, TTrackProxies &dst_proxies, int &order, const string &base_name, int indent)

Make all the tracks at different levels as top-level tracks.

void x_UpdateMsg()

udpate message in track title bar.

void SyncSettings(TTrackProxies &dst_proxies, int level) const

synchronize and merge track settings.

void SetConfigMgr(CTrackConfigManager *cfg_mgr)

void AddTracks(CTempTrackProxy *t_proxy, TTrackMap &tracks)

add sub tracks after tracks get created.

CRef< CFeaturePanelDS > m_DS

virtual void SetTrack(CLayoutTrack *track, int order, bool shown=true)

Replace the track by the given track order.

virtual void x_ReinitSubtracks()

reinitialize all subtracks if necessary.

void SetTrackInitDone(bool f)

CTempTrackProxy::TTrackProxies TTrackProxies

TTrackProxies m_TrackProxies

all the tracks including on and off.

void SetSubtrackProxies(const TTrackProxies &proxies)

void InitNATracks(const TAnnotMetaDataList &annots, bool makeContainersVisible)

bool GetSkipGenuineCheck() const

CTrackProxy data structure contains information about the position of a track in its parent scope,...

CTrackTypeInfo - holds description of a layout track type.

const string & GetDescr() const

const string & GetId() const

IIconProvider interface for tracks providing track icons.

virtual void RegisterIconImages() const =0

virtual bool UnderstandLevel() const =0

Have any concept of level.

virtual TTrackMap CreateTracks(SConstScopedObject &object, ISGDataSourceContext *ds_context, CRenderingContext *r_cntx, const SExtraParams &params=SExtraParams(), const TAnnotMetaDataList &src_annots=TAnnotMetaDataList()) const =0

create layout tracks based on input object and extra parameters.

virtual bool NeedBackgroundInit() const =0

Background track initialization.

virtual void LTH_PopupMenu(wxMenu *menu)=0

show track-specific context menu.

virtual const TIntervals & GetIntervals(void) const =0

access sub-intervals (if any).

vector< TSeqRange > TIntervals

const set< string > & GetAnnotsSnp()

const_iterator begin() const

iterator insert(const value_type &val)

iterator_bool insert(const value_type &val)

static unsigned char depth[2 *(256+1+29)+1]

static const string k_multi_level

static const int kSteps[]

void s_StabilizeBaseContainers(CTempTrackProxy::TTrackProxies &proxies, CTempTrackProxy::TTrackProxies &defaultProxies)

static const int kMaxCellSize

static const int kLevelTrackBaseID

static const string k_display_level

static const int kMinCellSize

cell sizes for CDS grid

static const string kBaseKey("GBPlugins.SeqGraphicFeatPanel")

static const int kMaxDisplayLevel

maximal display level in multiple level layout.

static const char * str(char *buf, int n)

CStaticArrayMap< string, CGeneModelConfig::EMergeStyle > TStyleMap

const CNcbiRegistry & GetConfig(void) const

Get the application's cached configuration parameters (read-only).

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

#define NCBI_CATCH(message)

Catch CExceptions as well This macro is deprecated - use *_X or *_XX variant instead of it.

const string & GetMsg(void) const

Get message string.

void Info(CExceptionArgs_Base &args)

CIRef< T > GetServiceByType()

retrieves a typed reference to a service, the name of C++ type is used as the name of the service.

void Render(CGlPane *pAreaPane, CGlPane *pPane, CRegularGridGen *pGenerator) const

void SetShowVertGrid(bool f)

void SetShowHorzGrid(bool f)

void SetAutoStepUpdate(bool f)

void EnableMinusOneBased(bool en_x, bool en_y)

void SetIntegerMode(bool IntegerX, bool IntegerY)

CRegularGridGen inline methods.

void EnableIntegerCentering(bool b_en)

void SetHorzColor(const CRgbaColor &color)

void SetVertColor(const CRgbaColor &color)

virtual void Translatef(GLfloat x, GLfloat y, GLfloat z)=0

virtual void Enable(GLenum glstate)=0

virtual void Begin(GLenum mode)=0

Start rendering.

virtual void BlendFunc(GLenum sfactor, GLenum dfactor)=0

Options to be used when GL_BLEND is enabled.

void Color3f(GLfloat r, GLfloat g, GLfloat b)

IRender & GetGl()

convenience function for getting current render manager

TVPRect & GetViewport(void)

TModelUnit GetOffsetY() const

virtual void PopMatrix()=0

virtual bool IsPrinterFriendly() const =0

virtual void End()=0

Finish rendering (create buffer and send to renderer)

void Inflate(T d_x, T d_y)

virtual void PolygonMode(GLenum face, GLenum mode)=0

Set the polygon rasterization mode.

void Color4f(GLfloat r, GLfloat g, GLfloat b, GLfloat a)

virtual TModelUnit TextWidth(const char *text) const

Compute and return font metrics.

virtual TModelUnit TextHeight(void) const

TModelRect & GetVisibleRect(void)

void Vertex2f(GLfloat x, GLfloat y)

virtual void Disable(GLenum glstate)=0

glDisable()

virtual void LineWidth(GLfloat w)=0

Set line width for drawing: glLineWidth()

TModelUnit GetOffsetX() const

virtual void ColorC(const CRgbaColor &c)=0

Set current color (glColor{3,4}{f,d}{v,})

virtual void PushMatrix()=0

@ eFontFace_Helvetica_Italic

CRef< objects::CScope > scope

CRef< CObject > GetResult() const

returns non-null pointer only if Completed or Running and has temporary results available

void Lighten(float scale)

CConstRef< CObject > object

string GetSeqIdString(bool with_version=false) const

Return seqid string with optional version for text seqid type.

CConstRef< CSeq_id > GetSeqIdOrNull(void) const

static CSeq_id_Handle GetHandle(const CSeq_id &id)

Normal way of getting a handle, works for any seq-id.

ENa_strand GetStrand(const CSeq_loc &loc, CScope *scope=0)

Returns eNa_strand_unknown if multiple Bioseqs in loc Returns eNa_strand_other if multiple strands in...

vector< CSeq_id_Handle > TSeq_id_Handles

Bulk retrieval methods Common argument typedef - vector of requested ids.

bool NotNull(void) const THROWS_NONE

Check if pointer is not null – same effect as NotEmpty().

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

TRefType Lock(void) const

Lock the object and return reference to it.

TObjectType * GetPointerOrNull(void) const THROWS_NONE

Get pointer value.

virtual bool GetBool(const string &section, const string &name, bool default_value, TFlags flags=0, EErrAction err_action=eThrow) const

Get boolean value of specified parameter name.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static list< string > & Split(const CTempString str, const CTempString delim, list< string > &arr, TSplitFlags flags=0, vector< SIZE_TYPE > *token_pos=NULL)

Split a string using specified delimiters.

static void TruncateSpacesInPlace(string &str, ETrunc where=eTrunc_Both)

Truncate whitespace in a string (in-place)

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static CStringUTF8 AsUTF8(const CTempString &src, EEncoding encoding, EValidate validate=eNoValidate)

Convert into UTF8 from a C/C++ string.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

static string & ToLower(string &str)

Convert string to lower case – string& version.

@ fSplit_Tokenize

All delimiters are merged and trimmed, to get non-empty tokens only.

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

void SetData(TData &value)

Assign a value to Data data member.

bool IsLocal(void) const

Check if variant Local is selected.

unsigned int

A callback function used to compare two keys in a database.

static void text(MDB_val *v)

void GatherFeatures(const string &text, bool match_case, objects::CBioseq_Handle bsh, objects::CScope &scope, CFeaturePanel *panel, vector< CMappedFeatOrObject > &search_results)

Defines: CTimeFormat - storage class for time format.

Int4 delta(size_t dimension_, const Int4 *score_)

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

A help struct for storing information about a icon.

static bool s_CompareCRefs(const CRef< CTempTrackProxy > &t1, const CRef< CTempTrackProxy > &t2)

void UseDefaultMarginWidth(wxMenu &menu)

Using default menu item margin width.

wxString ToWxString(const string &s)

string ToStdString(const wxString &s)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4