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NCBI C++ ToolKit: include/objtools/validator/feature_match.hpp Source File

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(

std::vector<CMappedFeat> *feat_list,

* scope);

vector< CRef< CMatchmRNA > > m_OverlappingmRNAs

void AddmRNA(CMatchmRNA &mrna)

CRef< CMatchmRNA > m_AssignedMrna

void SetXrefMatch(CMatchmRNA &mrna)

void SetNeedsmRNA(bool val)

int GetNummRNA(bool &loc_unique)

CMatchCDS(const CMappedFeat &cds)

const CRef< CMatchmRNA > & GetmRNA()

const CSeq_feat & GetFeat() const

bool operator<(const CMatchFeat &o) const

CMatchFeat(const CMappedFeat &feat)

bool FastMatchX(const CMatchFeat &o) const

CConstRef< CSeq_feat > m_feat

vector< CRef< CMatchCDS > > m_UnderlyingCDSs

bool MatchesUnderlyingCDS(unsigned int partial_type) const

void SetAccountedFor(bool val)

void SetCDS(const CSeq_feat &cds)

bool IsAccountedFor() const

CMatchmRNA(const CMappedFeat &mrna)

CConstRef< CSeq_feat > m_Cds

bool MatchAnyUnderlyingCDS(unsigned int partial_type) const

void AddCDS(CMatchCDS &cds)

namespace ncbi::objects::

vector< CRef< CMatchCDS > > m_CdsList

CRef< CMatchmRNA > FindMatchmRNA(const CMappedFeat &mrna)

bool MatchmRNAToCDSEnd(const CMappedFeat &mrna, unsigned int partial_type)

void SetBioseq(const std::vector< CMappedFeat > *feat_list, CScope *scope)

vector< CRef< CMatchmRNA > > m_mRNAList

unsigned int TSeqPos

Type for sequence locations and lengths.

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

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