Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/feature__match_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/validator/feature_match.cpp Source File

(

.m_pos_start !=

.m_pos_start)

.m_pos_start <

.m_pos_start;

(

.m_pos_stop !=

.m_pos_stop)

.m_pos_stop <

.m_pos_stop;

<

TFeatList>

cds_list.reserve(feat_list.size() / 2);

mrna_list.reserve(feat_list.size() / 2);

(

& feat_it : feat_list) {

& feature = feat_it.GetOriginalFeature();

(cds_list.empty() || mrna_list.empty())

mrna_begin = mrna_list.begin();

compare_attempts = 0;

(

& cds_it : cds_list)

(mrna_begin != mrna_list.end() &&

(**mrna_begin).maxpos() < cds_match.

())

(

mrna_it = mrna_begin;

mrna_it != mrna_list.end() &&

(**mrna_it).minpos() <= cds_match.

() &&

cds_match.

() <= (**mrna_it).maxpos();

cds_match.

(mrna_match);

mrna_match.

(cds_match);

vector < CRef<CMatchCDS> >::iterator cds_it =

(!(*cds_it)->HasmRNA()) {

vector < CRef<CMatchCDS> >::iterator cds_it =

(!(*cds_it)->HasmRNA()) {

vector < CRef<CMatchCDS> >::const_iterator cds_it =

.begin();

vector < CRef<CMatchmRNA> >::iterator mrna_it =

(!(*mrna_it)->IsAccountedFor()) {

.Reset(*mrna_it);

vector < CRef<CMatchmRNA> >::iterator mrna_it =

vector < string > product_list;

(!(*mrna_it)->IsAccountedFor()) {

((*mrna_it)->GetFeat().IsSetProduct()) {

(*mrna_it)->GetFeat().GetProduct().GetLabel(&

);

product_list.push_back(

);

(product_list.size() > 1) {

stable_sort(product_list.begin(), product_list.end());

vector < string >::iterator s1 = product_list.begin();

vector < string >::iterator s2 = s1;

(s2 != product_list.end()) {

vector < CRef<CMatchmRNA> >::iterator mrna_it =

.begin();

(; mrna_it !=

.end(); ++mrna_it) {

@ eExtreme_Positional

numerical value

@ eExtreme_Biological

5' and 3'

vector< CRef< CMatchmRNA > > m_OverlappingmRNAs

void AddmRNA(CMatchmRNA &mrna)

CRef< CMatchmRNA > m_AssignedMrna

void SetXrefMatch(CMatchmRNA &mrna)

int GetNummRNA(bool &loc_unique)

const CSeq_feat & GetFeat() const

CMatchFeat(const CMappedFeat &feat)

CConstRef< CSeq_feat > m_feat

vector< CRef< CMatchCDS > > m_UnderlyingCDSs

bool MatchesUnderlyingCDS(unsigned int partial_type) const

void SetAccountedFor(bool val)

void SetCDS(const CSeq_feat &cds)

bool IsAccountedFor() const

CConstRef< CSeq_feat > m_Cds

bool MatchAnyUnderlyingCDS(unsigned int partial_type) const

void AddCDS(CMatchCDS &cds)

ESubtype GetSubtype(void) const

namespace ncbi::objects::

int Compare(const CSeq_feat &f2) const

Compare relative order of this feature and feature f2, ordering first by features' coordinates,...

vector< CRef< CMatchCDS > > m_CdsList

CRef< CMatchmRNA > FindMatchmRNA(const CMappedFeat &mrna)

bool MatchmRNAToCDSEnd(const CMappedFeat &mrna, unsigned int partial_type)

void SetBioseq(const std::vector< CMappedFeat > *feat_list, CScope *scope)

vector< CRef< CMatchmRNA > > m_mRNAList

Include a standard set of the NCBI C++ Toolkit most basic headers.

void s_SetUpXrefPairs(vector< CRef< CMatchCDS > > &cds_list, vector< CRef< CMatchmRNA > > &mrna_list, const TFeatList &feat_list, CScope *scope, ENoteCDS eNoteCDS)

unsigned int TSeqPos

Type for sequence locations and lengths.

virtual bool Equals(const CSerialObject &object, ESerialRecursionMode how=eRecursive) const

Check if both objects contain the same values.

TSeqPos GetStart(ESeqLocExtremes ext) const

Return start and stop positions of the seq-loc.

TSeqPos GetStop(ESeqLocExtremes ext) const

Int8 TestForOverlapEx(const CSeq_loc &loc1, const CSeq_loc &loc2, EOverlapType type, CScope *scope=0, TOverlapFlags flags=fOverlap_Default)

Updated version of TestForOverlap64().

@ eOverlap_SubsetRev

1st is a subset of 2nd ranges

@ eOverlap_CheckIntRev

1st is a subset of 2nd with matching boundaries

const CSeq_feat & GetOriginalFeature(void) const

Get original feature with unmapped location/product.

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static SIZE_TYPE FindNoCase(const CTempString str, const CTempString pattern, SIZE_TYPE start, SIZE_TYPE end, EOccurrence which=eFirst)

Find the pattern in the specified range of a string using a case insensitive search.

static bool Equal(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2, ECase use_case=eCase)

Test for equality of a substring with another string.

static const char label[]

bool IsSetData(void) const

the specific data Check if a value has been assigned to Data data member.

bool IsCdregion(void) const

Check if variant Cdregion is selected.

const TLocation & GetLocation(void) const

Get the Location member data.

const TData & GetData(void) const

Get the Data member data.

const TExcept_text & GetExcept_text(void) const

Get the Except_text member data.

bool IsSetExcept_text(void) const

explain if except=TRUE Check if a value has been assigned to Except_text data member.

bool IsRna(void) const

Check if variant Rna is selected.

constexpr auto sort(_Init &&init)

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static int match(PCRE2_SPTR start_eptr, PCRE2_SPTR start_ecode, uint16_t top_bracket, PCRE2_SIZE frame_size, pcre2_match_data *match_data, match_block *mb)

Utility macros and typedefs for exploring NCBI objects from seqfeat.asn.

static SLJIT_INLINE sljit_ins l(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)

bool operator()(const CRef< _T > &l, const CRef< _T > &r) const

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4