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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/feature__ds_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/widgets/seq_graphic/feature_ds.hpp Source File

1 #ifndef GUI_WIDGETS_SEQ_GRAPHIC___FEATURE_DS__HPP 2 #define GUI_WIDGETS_SEQ_GRAPHIC___FEATURE_DS__HPP 51 CSGFeatureDS

(objects::CScope& scope,

const

objects::CSeq_id&

id

);

57 const string

& extra_filter =

""

);

80 void

LoadGeneModelFeatures(

81

objects::SAnnotSelector& lm_feat_sel,

82

objects::SAnnotSelector& m_feat_sel,

87 void

GetAnnotNames(objects::SAnnotSelector& sel,

90 void

GetAnnotNames_var(objects::SAnnotSelector& sel,

93

vector<string> GetFilters(

const string

& annot_name,

96 void

SetFilter(

const string

& filter);

97 const string

& GetFilter()

const

;

99 void

SetSortBy(

const string

& sortby);

100 const string

& GetSortBy()

const

;

102 void

SetGraphCacheKey(

const string

& graph_cache_key);

103 void

SetRemoteDataType(

const string

& data_type);

105 bool

IsBigBed()

const

;

106 bool

IsVcfTabix()

const

;

126 return "Forward strand"

;

127 return "Reverse strand"

;

130 virtual int GetGroupIdx

(

const

objects::CMappedFeat& feat)

const

{

137 return

GetSorterDescr();

141 static const string

strand =

"strand"

;

163 virtual string

GetExtensionIdentifier()

const

;

164 virtual string

GetExtensionLabel()

const

;

168 virtual bool

IsSharable()

const

;

static SSorterDescriptor GetSorterDescr()

virtual string GroupIdxToName(int idx) const

Convert group index into group name.

virtual int GetGroupIdx(const objects::CMappedFeat &feat) const

Get the sorted group index for a given feature.

virtual SSorterDescriptor GetThisDescr() const

Return a name for the sorter.

CFeatStrandSorter(const string &sort_str)

static const string & GetID()

const string & GetSortBy() const

void SetRemoteDataType(const string &data_type)

void SetGraphCacheKey(const string &graph_cache_key)

void SetSortBy(const string &sortby)

void SetFilter(const string &filter)

CSGFeatureDS inline method.

virtual void LoadFeatures(objects::SAnnotSelector &sel, const TSeqRange &range, TModelUnit window, TJobToken token=-1, int max_feat=-1, ELinkedFeatDisplay LinkedFeatDisplay=ELinkedFeatDisplay::eLFD_Default, const string &extra_filter="")

const string & GetFilter() const

list< CRef< CSeqGlyph > > TObjects

IExtension IExtension interface represents an abstract pluggable component.

IFeatSorter is an abstract interface for sorting features based on any criteria.

static const struct name_t names[]

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

#define NCBI_GUIWIDGETS_SEQGRAPHIC_EXPORT

Multi-threading â mutexes; rw-locks; semaphore.

vector< SFeatBatchJobRequest > TFeatBatchJobRequests

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