RetroSearch Browse

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/featedit__util_8hpp_source.html below:

NCBI C++ ToolKit: include/gui/packages/pkg_sequence_edit/featedit_util.hpp Source File

28 #ifndef _FEATEDIT_UTIL_H_ 29 #define _FEATEDIT_UTIL_H_ 56 static const string kSatelliteTypes

[] = {

"satellite"

"microsatellite"

"minisatellite"

};

71 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat ) {

return ""

; }

72 virtual string GetLabel

()

const

{

return ""

; }

73 virtual bool RelaxedMatch

(

const

objects::CSeq_feat & f1,

const

objects::CSeq_feat &f2)

const

{

return true

; };

74 virtual

vector<string>

IsValid

(

const

vector<string>& values) { vector<string> x;

return

x; };

75 virtual

vector<CConstRef<CObject> >

GetObjects

(objects::CBioseq_Handle bsh);

76 virtual

vector<CRef<objects::edit::CApplyObject> >

GetApplyObjects

(objects::CBioseq_Handle bsh);

81 virtual

vector <string>

GetVals

(

const

objects::CSeq_feat& feat) {vector <string> x;

return

x;};

99

objects::CSeqFeatData::ESubtype subtype = objects::CSeqFeatData::eSubtype_any);

108

objects::CSeq_feat & in_out_feat );

110 const

objects::CSeq_feat & in_out_feat ) ;

121

objects::CSeq_feat & in_out_feat );

123 const

objects::CSeq_feat & in_out_feat ) ;

134

objects::CSeq_feat & in_out_feat );

136 const

objects::CSeq_feat & in_out_feat ) ;

137 virtual string GetLabel

()

const

{

return "Comment"

; }

147

objects::CSeq_feat & in_out_feat );

149 const

objects::CSeq_feat & in_out_feat ) ;

150 virtual string GetLabel

()

const

{

return "Exception"

; }

161

objects::CSeq_feat & in_out_feat );

163 const

objects::CSeq_feat & in_out_feat );

175 virtual

vector<string>

IsValid

(

const

vector<string>& values);

176 virtual string GetLabel

()

const

{

return "rpt_unit_range\nExample: 1..10"

; }

187 virtual

vector<string>

IsValid

(

const

vector<string>& values);

196 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat);

223 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat );

225 virtual bool RelaxedMatch

(

const

objects::CSeq_feat & f1,

const

objects::CSeq_feat &f2)

const

;

227 virtual

vector<string>

IsValid

(

const

vector<string>& values);

242

objects::CSeq_feat & in_out_feat );

244 const

objects::CSeq_feat & in_out_feat );

245 virtual string GetLabel

()

const

{

return "product"

; }

246 virtual

vector<CRef<objects::edit::CApplyObject> >

GetApplyObjects

(objects::CBioseq_Handle bsh);

258

objects::CSeq_feat & in_out_feat );

260 const

objects::CSeq_feat & in_out_feat );

261 virtual string GetLabel

()

const

{

return "codon_start"

; }

262 virtual

vector<CRef<objects::edit::CApplyObject> >

GetApplyObjects

(objects::CBioseq_Handle bsh);

273

objects::CSeq_feat & in_out_feat);

275 const

objects::CSeq_feat & in_out_feat);

276 virtual string GetLabel

()

const

{

return "transl_table"

; }

287

objects::CSeq_feat & in_out_feat );

289 const

objects::CSeq_feat & in_out_feat );

290 virtual string GetLabel

()

const

{

return "description"

; }

301

objects::CSeq_feat & in_out_feat );

303 const

objects::CSeq_feat & in_out_feat );

304 virtual

vector<CRef<objects::edit::CApplyObject> >

GetApplyObjects

(objects::CBioseq_Handle bsh);

330

objects::CSeq_feat & in_out_feat );

332 const

objects::CSeq_feat & in_out_feat );

355

objects::CSeq_feat & in_out_feat );

357 const

objects::CSeq_feat & in_out_feat );

364 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat );

372 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat );

379 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat );

385 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat );

392 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat );

399 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat );

406 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat );

413 virtual string GetFromFeat

(

const

objects::CSeq_feat & in_out_feat );

User-defined methods of the data storage class.

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetLabel() const

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetLabel() const

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetLabel() const

static CRef< CFeatureSeqTableColumnBase > Create(const string &sTitle, objects::CSeqFeatData::ESubtype subtype=objects::CSeqFeatData::eSubtype_any)

virtual vector< CConstRef< CObject > > GetObjects(objects::CBioseq_Handle bsh)

virtual vector< string > GetVals(const objects::CSeq_feat &feat)

objects::CSeqFeatData::ESubtype m_Subtype

virtual bool AllowMultipleValues()

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

void SetMajorType(objects::CSeqFeatData::E_Choice major_type)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

objects::CSeqFeatData::E_Choice GetMajorType()

virtual vector< CRef< objects::edit::CApplyObject > > GetRelatedGeneApplyObjects(objects::CBioseq_Handle bsh)

void SetScope(CRef< CScope > scope)

objects::CSeqFeatData::E_Choice m_MajorType

void SetSubtype(objects::CSeqFeatData::ESubtype subtype)

virtual vector< string > IsValid(const vector< string > &values)

virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetLabel() const

objects::CSeqFeatData::ESubtype GetSubtype()

CFeatureSeqTableColumnBase()

virtual bool RelaxedMatch(const objects::CSeq_feat &f1, const objects::CSeq_feat &f2) const

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

CGbQualColumn(string qual)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual string GetLabel() const

@Gb_qual.hpp User-defined methods of the data storage class.

static bool IsGeneRefField(string qual)

static EFieldType x_GetFieldTypeFromString(string qual)

CGeneRefColumn(string qual)

virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetLabel() const

virtual bool AllowMultipleValues()

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual string GetLabel() const

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetLabel() const

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual vector< CRef< objects::edit::CApplyObject > > GetApplyObjects(objects::CBioseq_Handle bsh)

virtual string GetLabel() const

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

static EFieldType x_GetFieldTypeFromString(string qual)

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

static bool IsProtRefField(string qual)

CProtRefColumn(string qual)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

virtual string GetLabel() const

CRptUnitRangeColumn(const vector< size_t > lens)

virtual vector< string > IsValid(const vector< string > &values)

string x_GetSatelliteName(const string &field) const

string x_AddSatellitePrefix(const string &value, objects::edit::EExistingText existing_text) const

bool x_AddSatelliteName(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

bool x_AddSatelliteType(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetLabel() const

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

CSatelliteColumn(const string &satellite_field)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

void x_ClearSatelliteSubFields(objects::CSeq_feat &in_out_feat) const

string x_GetSatelliteType(const string &field) const

bool x_IsQualAMatch(const CGb_qual &qual) const

virtual void ClearInFeature(objects::CSeq_feat &in_out_feat)

virtual string GetLabel() const

virtual bool RelaxedMatch(const objects::CSeq_feat &f1, const objects::CSeq_feat &f2) const

virtual vector< string > IsValid(const vector< string > &values)

CSatelliteTypeNameColumn(string satellite_type, bool need_unique=false)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

void SetUniqueness(bool val)

virtual bool AddToFeature(objects::CSeq_feat &in_out_feat, const string &newValue, objects::edit::EExistingText existing_text)

virtual string GetFromFeat(const objects::CSeq_feat &in_out_feat)

Include a standard set of the NCBI C++ Toolkit most basic headers.

CRef< CCmdComposite > ApplyFeatureSeqTableToSeqEntry(CRef< objects::CSeq_table > table, objects::CSeq_entry_Handle entry)

int FindHighestFeatureId(const objects::CSeq_entry_Handle &entry)

vector< CRef< CFeatureSeqTableColumnBase > > TFeatureSeqTableColumnList

CRef< objects::CSeq_feat > AddRibosomalRNA(const objects::CBioseq_Handle &bsh, string name, int from, int to, bool ispartial5, bool ispartial3)

static const int kNumSatelliteTypes

void SetRnaProductName(objects::CRNA_ref &rna, const string &product, string &remainder, objects::edit::EExistingText existing_text)

CRef< CCmdComposite > CreateControlRegion(objects::CSeq_entry_Handle entry)

const string kPartialStart

static const string kSatelliteTypes[]

void AddColumnsToFeatureTable(const vector< string > &fields, CRef< objects::CSeq_table > table, objects::CSeq_entry_Handle entry)

CRef< CCmdComposite > AddNamedrRna(objects::CSeq_entry_Handle entry, string rna_name, bool ispartial5, bool ispartial3)

CRef< CCmdComposite > CreateMicrosatellite(objects::CSeq_entry_Handle entry)

CRef< objects::CSeq_table > BuildFeatureSeqTableFromSeqEntry(objects::CSeq_entry_Handle entry, const SAnnotSelector &sel)

const string kPartialStop

CRef< objects::CSeq_feat > AddMiscRNA(const objects::CBioseq_Handle &bsh, string name, int from, int to, bool ispartial5, bool ispartial3)

CRef< objects::CSeq_loc > CreateFeatLocation(const objects::CBioseq_Handle &bsh, int from, int to, bool ispartial5, bool ispartial3)

const string kStopColLabel

const string kStartColLabel

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GUIPKG_SEQUENCE_EDIT_EXPORT

<!DOCTYPE HTML >< html > n< header > n< title > PubSeq Gateway Help Page</title > n< style > n table

const GenericPointer< typename T::ValueType > T2 value

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4