Go to the source code of this file.
Go to the SVN repository for this file.
int FindHighestFeatureId (const objects::CSeq_entry_Handle &entry) CRef< objects::CSeq_table > BuildFeatureSeqTableFromSeqEntry (objects::CSeq_entry_Handle entry, const SAnnotSelector &sel) void AddColumnsToFeatureTable (const vector< string > &fields, CRef< objects::CSeq_table > table, objects::CSeq_entry_Handle entry) CRef< CCmdComposite > ApplyFeatureSeqTableToSeqEntry (CRef< objects::CSeq_table > table, objects::CSeq_entry_Handle entry) CRef< objects::CSeq_loc > CreateFeatLocation (const objects::CBioseq_Handle &bsh, int from, int to, bool ispartial5, bool ispartial3) CRef< objects::CSeq_feat > AddRibosomalRNA (const objects::CBioseq_Handle &bsh, string name, int from, int to, bool ispartial5, bool ispartial3) CRef< CCmdComposite > AddNamedrRna (objects::CSeq_entry_Handle entry, string rna_name, bool ispartial5, bool ispartial3) CRef< objects::CSeq_feat > AddMiscRNA (const objects::CBioseq_Handle &bsh, string name, int from, int to, bool ispartial5, bool ispartial3) CRef< CCmdComposite > CreateControlRegion (objects::CSeq_entry_Handle entry) CRef< CCmdComposite > CreateMicrosatellite (objects::CSeq_entry_Handle entry) void SetRnaProductName (objects::CRNA_ref &rna, const string &product, string &remainder, objects::edit::EExistingText existing_text) ◆ TFeatureSeqTableColumnList ◆ AddColumnsToFeatureTable() void AddColumnsToFeatureTable ( const vector< string > & fields, CRef< objects::CSeq_table > table, objects::CSeq_entry_Handle entry ) ◆ AddMiscRNA() ◆ AddNamedrRna() ◆ AddRibosomalRNA() ◆ ApplyFeatureSeqTableToSeqEntry() CRef<CCmdComposite> ApplyFeatureSeqTableToSeqEntry ( CRef< objects::CSeq_table > table, objects::CSeq_entry_Handle entry ) ◆ BuildFeatureSeqTableFromSeqEntry() CRef<objects::CSeq_table> BuildFeatureSeqTableFromSeqEntry ( objects::CSeq_entry_Handle entry, const SAnnotSelector & sel ) ◆ CreateControlRegion() ◆ CreateFeatLocation() CRef<objects::CSeq_loc> CreateFeatLocation ( const objects::CBioseq_Handle & bsh, int from, int to, bool ispartial5, bool ispartial3 ) ◆ CreateMicrosatellite() ◆ FindHighestFeatureId() ◆ SetRnaProductName() ◆ kFeatureID ◆ kNumSatelliteTypes ◆ kPartialStartDefinition at line 52 of file featedit_util.hpp.
Referenced by AddFeatureToSeqTable(), CFeatureSeqTableColumnBaseFactory::Create(), CFeatureTableCommandConverter::GetChoices(), CCdsFromGeneMrnaExon::GetCommand(), CConvertCdsToMiscFeat::GetCommand(), CConvertFeatDlg::GetCommand(), CExtendPartialFeatDlg::GetCommand(), CFuseFeaturesDlg::GetCommand(), CGeneFeatFromOtherFeatDlg::GetCommand(), CmRNAFromGeneCdsExon::GetCommand(), CResolveIntersectingFeats::GetCommand(), CtRNAFromGene::GetCommand(), CBulkCDS::GetCommandFromValuesTable(), CBulkGene::GetCommandFromValuesTable(), CBulkMiscFeat::GetCommandFromValuesTable(), CBulkRna::GetCommandFromValuesTable(), CPartialStartColumn::GetLabel(), CBulkCDS::GetValuesTableFromSeqEntry(), CBulkGene::GetValuesTableFromSeqEntry(), CBulkMiscFeat::GetValuesTableFromSeqEntry(), CBulkRna::GetValuesTableFromSeqEntry(), CCdsToMatPeptide::Init(), and CSelectFeatures::OnAccept().
◆ kPartialStopDefinition at line 53 of file featedit_util.hpp.
Referenced by AddFeatureToSeqTable(), CFeatureSeqTableColumnBaseFactory::Create(), CFeatureTableCommandConverter::GetChoices(), CBulkCDS::GetCommandFromValuesTable(), CBulkGene::GetCommandFromValuesTable(), CBulkMiscFeat::GetCommandFromValuesTable(), CBulkRna::GetCommandFromValuesTable(), CPartialStopColumn::GetLabel(), CBulkCDS::GetValuesTableFromSeqEntry(), CBulkGene::GetValuesTableFromSeqEntry(), CBulkMiscFeat::GetValuesTableFromSeqEntry(), and CBulkRna::GetValuesTableFromSeqEntry().
◆ kProblems ◆ kSatelliteTypes const string kSatelliteTypes[] = {"satellite", "microsatellite", "minisatellite" } static ◆ kStartColLabel ◆ kStopColLabelRetroSearch is an open source project built by @garambo | Open a GitHub Issue
Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo
HTML:
3.2
| Encoding:
UTF-8
| Version:
0.7.4