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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/feat__util_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/import/ftable/feat_util.cpp Source File

77 const string

& codeBreakStr)

82 const string

cdstr_start =

"(pos:"

;

83 const string

cdstr_div =

",aa:"

;

84 const string

cdstr_end =

")"

;

90 size_t

pos_start = cdstr_start.length();

91 size_t

pos_stop = codeBreakStr.find(cdstr_div);

92 string

posstr = codeBreakStr.substr(pos_start, pos_stop-pos_start);

93 string

aaa = codeBreakStr.substr(pos_stop+cdstr_div.length());

94

aaa = aaa.substr(0, aaa.length()-cdstr_end.length());

96 const string

posstr_compl =

"complement("

;

99

posstr = posstr.substr(posstr_compl.length());

100

posstr = posstr.substr(0, posstr.length()-1);

103 const string

posstr_div =

".."

;

104 size_t

pos_div = posstr.find(posstr_div);

105 if

(pos_div == string::npos) {

120

pCodeBreak->

SetAa

().SetNcbieaa(aaCode);

121 auto

& cbLoc = pCodeBreak->

SetLoc

().SetInt();

122

cbLoc.SetId().Assign(

id

);

125

cbLoc.SetStrand(strand);

bool IsFtable(void) const

static CRef< CCode_break > MakeCodeBreak(const CSeq_id &, const std::string &)

static bool ContainsData(const CSeq_annot &annot)

static CRef< CSeq_loc > AddLocations(const CSeq_loc &, const CSeq_loc &)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Override Assign() to incorporate cache invalidation.

void Add(const CSeq_loc &other)

Simple adding of seq-locs.

void Reset(void)

Reset reference object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static bool EndsWith(const CTempString str, const CTempString end, ECase use_case=eCase)

Check if a string ends with a specified suffix value.

static bool StartsWith(const CTempString str, const CTempString start, ECase use_case=eCase)

Check if a string starts with a specified prefix value.

void SetAa(TAa &value)

Assign a value to Aa data member.

void SetLoc(TLoc &value)

Assign a value to Loc data member.

ENa_strand

strand of nucleic acid

bool IsNull(void) const

Check if variant Null is selected.

const TFtable & GetFtable(void) const

Get the variant data.

const TData & GetData(void) const

Get the Data member data.

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

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