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NCBI C++ ToolKit: src/gui/widgets/feat_table/feat_table_ds.cpp Source File

( loc.

() ){

, m_TotalComparisons(1)

, m_CompletedComparisons(0)

(

);

seq_id = seq_loc->

();

seq_id =

*

(object);

(

= 0; feat_iter && !

(); ++feat_iter ){

}

( seq_id !=

){

& part_id = ci.GetSeq_id();

range += ci.GetRange();

proxy.

( mapped, range );

range = ci.GetRange();

proxy.

( mapped, range );

& scope = map_feat.GetAnnot().GetScope();

( map_feat.IsSetProduct() ){

& loc = map_feat.GetProduct();

strand =

;

.SetExcludeExternal(

)

(

<<

<< e.GetMsg() );

( e.GetErrCode() ) {

(

<<

<< e.GetMsg() );

.push_back( it->first );

x_OnJobNotification( evt );

job_id = notif -> GetJobID();

( notif -> GetState() ){

( !res_obj.

() ){

(

);

(

);

(

);

rv +=

(

);

: m_Disabled(

)

, m_Label( wxEmptyString ), m_Types(), m_FromLoc( -1 ), m_ToLoc( -1 ), m_InclLoc(

)

, m_LengthLoc( -1 ), m_Product( wxEmptyString ), m_NoProduct(

)

ix = line.Find(

.Upper() );

( ix == wxNOT_FOUND ){

ix =

.Index( line,

,

);

( ix == wxNOT_FOUND ){

( !prod.empty() ){

ix = prod.Find(

.Upper() );

( ix == wxNOT_FOUND ){

static CRef< CScope > m_Scope

User-defined methods of the data storage class.

size_t GetSize(void) const

CAppJobError Default implementation for IAppJobError - encapsulates a text error message.

IAppJobListener Interface for components that need to be notified about changes in Jobs.

CAppJobNotification Notification send by CAppJobEventTranslator.

CAppJobProgress Default implementation for IAppJobProgress - the class encapsulates a text message an...

CEvent - generic event implementation TODO TODO - Attachments.

CFeatTableDS Data source for Feature Table widget.

virtual int GetNumRows() const

Returns the number of rows in the model.

virtual wxVariant GetValueAt(int row, int col) const

void Update()

reloads data based on current settings

vector< SFeatureRow > m_FeatureRows

CRef< objects::CScope > m_Scope

void OnJobNotification(CEvent *evt)

const objects::CSeq_feat & GetFeature(size_t row) const

const SFeatureRow & GetFeatureRow(size_t row) const

virtual int GetNumColumns() const

Returns the number of columns in the model.

virtual wxString GetColumnName(int aColIx) const

Returns a default name for the column using spreadsheet conventions: A, B, C, ...

void SetSelector(const objects::SAnnotSelector &sel)

sets the DataSource-specific filter

CConstRef< CSerialObject > m_Object

virtual void x_OnJobNotification(CEvent *evt)

void GetTypeNames(vector< string > &names) const

objects::SAnnotSelector m_Selector

void Init(const CSerialObject &obj, objects::CScope &scope, const objects::SAnnotSelector *sel=0)

void x_NotifyObserversNow()

CAppJobDispatcher::TJobID m_ActiveJob

app job notification and control

virtual wxString GetColumnType(int aColIx) const

Tries to extract actual type from row 0 value if it exists.

Alignment-based data source.

virtual CRef< CObject > GetResult()

Returns the Job Result.

size_t m_TotalComparisons

for status reporting

virtual EJobState Run()

Function that does all the useful work, called by the Engine.

CRef< CFeatureRetrievalResult > m_Result

CConstRef< CSerialObject > m_Object

virtual CConstIRef< IAppJobError > GetError()

Returns IAppJobError object describing internal error that caused the Job to fail.

virtual CConstIRef< IAppJobProgress > GetProgress()

return progress object, the function shall be synchronized internally.

virtual string GetDescr() const

Returns a human readable description of the Job (optional)

size_t m_CompletedComparisons

CRef< CAppJobError > m_Error

CFeatureRetrievalJob(const CSerialObject &obj, CScope &scope, SAnnotSelector &sel)

AppJobs for background loading and preparation.

vector< CFeatTableDS::SFeatureRow > m_Features

Base class to build jobs with cancel functionality.

namespace ncbi::objects::

Seq-loc iterator class – iterates all intervals from a seq-loc in the correct order.

Base class for all serializable objects.

virtual wxString GetColumnName(int col_idx) const

Returns a default name for the column using spreadsheet conventions: A, B, C, ...

virtual void x_FireDataChanged()

virtual wxVariant GetValueAtColumn(int col) const =0

static wxString s_FeatTableColNames[]

static int s_CountIntervals(const CSeq_loc &loc)

static const int s_FeatTableNumCols

static const struct name_t names[]

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

virtual const char * what(void) const noexcept

Standard report (includes full backlog).

static objects::SAnnotSelector GetAnnotSelector(TAnnotFlags flags=0)

request an annotation selector for a given type

static void GetLabel(const CObject &obj, string *label, ELabelType type=eDefault)

static CAppJobDispatcher & GetInstance()

virtual bool IsCanceled() const override

bool DeleteJob(TJobID job_id)

when a Job is deleted the listener is not notified

EJobState

Job states (describe FSM)

TJobID StartJob(IAppJob &job, const string &engine_name, IEngineParams *params=NULL)

Starts a Job on the specified engine in "passive mode" - no notifications or progress reports will be...

#define ON_EVENT(type, id, handler)

#define END_EVENT_MAP()

Ends definition of Command Map.

#define BEGIN_EVENT_MAP(thisClass, baseClass)

Begins definition of Command Map for CEventHandler-derived class.

virtual bool Send(CEvent *evt, EDispatch disp_how=eDispatch_Default, int pool_name=ePool_Default)

Sends an event synchronously.

void SetNormDone(float done)

@ eEngine_UnknownJob

the job is not registered in the Engine

@ eUnknownJob

Job record lost.

string GetLabel(const CSeq_id &id)

const CSeq_id * GetId(void) const

Get the id of the location return NULL if has multiple ids or no id at all.

@ fFGL_Type

Always include the feature's type.

ENa_strand GetStrand(const CSeq_loc &loc, CScope *scope=0)

Returns eNa_strand_unknown if multiple Bioseqs in loc Returns eNa_strand_other if multiple strands in...

bool IsSameBioseq(const CSeq_id &id1, const CSeq_id &id2, CScope *scope, CScope::EGetBioseqFlag get_flag=CScope::eGetBioseq_All)

Determines if two CSeq_ids represent the same CBioseq.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CSeq_annot_Handle GetSeq_annotHandle(const CSeq_annot &annot, EMissing action=eMissing_Default)

const CSeq_annot_Handle & GetAnnot(void) const

Get handle to seq-annot for this feature.

bool IsSetProduct(void) const

CScope & GetScope(void) const

Get scope this handle belongs to.

const CSeq_loc & GetLocation(void) const

const CSeq_feat & GetOriginalFeature(void) const

Get original feature with unmapped location/product.

const CSeq_loc & GetProduct(void) const

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

TObjectType * GetPointer(void) THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

void Reset(void)

Reset reference object.

bool IsNull(void) const THROWS_NONE

Check if pointer is null – same effect as Empty().

position_type GetLength(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static const char label[]

TTo GetTo(void) const

Get the To member data.

TFrom GetFrom(void) const

Get the From member data.

ENa_strand

strand of nucleic acid

const Tdata & Get(void) const

Get the member data.

list< CRef< CSeq_loc > > Tdata

E_Choice Which(void) const

Which variant is currently selected.

const Tdata & Get(void) const

Get the member data.

const TPacked_pnt & GetPacked_pnt(void) const

Get the variant data.

const TPoints & GetPoints(void) const

Get the Points member data.

const TMix & GetMix(void) const

Get the variant data.

const TPacked_int & GetPacked_int(void) const

Get the variant data.

@ eNa_strand_both_rev

in reverse orientation

@ eNa_strand_both

in forward orientation

@ e_Empty

to NULL one Seq-id in a collection

@ e_Feat

indirect, through a Seq-feat

unsigned int

A callback function used to compare two keys in a database.

const struct ncbi::grid::netcache::search::fields::SIZE size

#define row(bind, expected)

void FillIn(const objects::CMappedFeat &map_feat)

objects::CMappedFeat feat

virtual bool operator()(const IRowModel &aRow) const

wxString ToWxString(const string &s)

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