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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/fcs__reader_8hpp_source.html below:

NCBI C++ ToolKit: src/app/table2asn/fcs_reader.hpp Source File

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1 #ifndef __FCS_READER_INCLUDED__ 2 #define __FCS_READER_INCLUDED__ 57  void xTrimData

(objects::CSeq_inst& inst,

const Tlocs

& col)

const

;

58  void xTrimExt

(objects::CSeq_inst& inst,

const Tlocs

& col)

const

;

59  void xTrimLiteral

(objects::CSeq_literal& lit,

int

start,

int

end)

const

;

60  bool xCheckLen

(

const

objects::CBioseq& inst)

const

;

bool xCheckLen(const objects::CBioseq &inst) const

void xTrimData(objects::CSeq_inst &inst, const Tlocs &col) const

void PostProcess(objects::CSeq_entry &entry)

void LoadFile(ILineReader &linereader)

void xTrimLiteral(objects::CSeq_literal &lit, int start, int end) const

void xTrimExt(objects::CSeq_inst &inst, const Tlocs &col) const

CForeignContaminationScreenReportReader(const CTable2AsnContext &context)

const CTable2AsnContext & m_context

bool AnnotateOrRemove(objects::CSeq_entry &entry) const

map< string, TColumns > Tdata

~CForeignContaminationScreenReportReader()

IdMapper base class implementation.

@Seq_descr.hpp User-defined methods of the data storage class.

Base class for all serializable objects.

Abstract base class for lightweight line-by-line reading.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static CS_CONTEXT * context


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