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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/fasta__seqblock__item_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq/fasta_seqblock_item.cpp Source File

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43 #include <wx/dcclient.h> 44 #include <wx/txtstrm.h> 50

: m_Bioseq(h), m_From(from), m_Length(length)

78  static CTextStyle

errStyle(255,0,0,255,255,255,wxTRANSPARENT,

false

,

false

);

79  static string

err_msg_saved;

88

seq.append(

string

(

m_Length

- seq.length(),

'-'

));

96  size_t i

, from, length,

99  if

(err_msg.empty()) {

104

ostream << seq.substr(from, length) <<

NewLine

();

113

ostream << err_msg <<

NewLine

();

118  if

(err_msg_saved != err_msg) {

119

err_msg_saved = err_msg;

120  LOG_POST

(

Error

<<

"CException in CFastaSeqBlockItem::x_RenderText: "

<< err_msg);

virtual const CConstRef< CObject > GetAssosiatedObject() const

CRef< objects::CSeq_loc > m_Loc

virtual size_t GetLineCount() const

virtual void x_RenderText(CStyledTextOStream &ostream, CTextPanelContext *context) const

const objects::CBioseq_Handle m_Bioseq

virtual void CalcSize(wxDC &dc, CTextPanelContext *context)

CFastaSeqBlockItem(const objects::CBioseq_Handle &h, size_t from, size_t length)

Base class for all object manager exceptions.

unsigned int TSeqPos

Type for sequence locations and lengths.

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

void Error(CExceptionArgs_Base &args)

const string & GetMsg(void) const

Get message string.

void SetId(CSeq_id &id)

set the 'id' field in all parts of this location

void GetSeqData(TSeqPos start, TSeqPos stop, string &buffer) const

Fill the buffer string with the sequence data for the interval [start, stop).

void SetIupacCoding(void)

Set coding to either Iupacaa or Iupacna depending on molecule type.

TObjectType * GetPointerOrNull(void) THROWS_NONE

Get pointer value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const struct ncbi::grid::netcache::search::fields::SIZE size

static CS_CONTEXT * context

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