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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/fasta__retrieve__job_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/widgets/seq/fasta_retrieve_job.cpp Source File

53  const

vector<pair<CBioseq_Handle, string> >& handles)

86  size_t

blockCount = (seqLength + blockSize - 1) / blockSize;

88

vector<ITextItem*> items(blockCount, 0);

90  for

(

size_t i

= 0;

i

< blockCount; ++

i

) {

92  size_t

from =

i

*blockSize;

93  size_t count

= (

i

+ 1 == blockCount) ? seqLength - from : blockSize;

96

expanded->

AddItem

(

new CExpandItem

(seqCollapsed, seqExpanded, (blockCount == 1)),

false

);

130  size_t

blockCount = (seqLength + blockSize - 1)/blockSize;

132  for

(

size_t i

= 0;

i

< blockCount; ++

i

) {

135  size_t

from = range.

GetFrom

() +

i

*blockSize;

136  size_t count

= (

i

+ 1 == blockCount) ? seqLength -

i

*blockSize : blockSize;

139

expanded->

AddItem

(

new CExpandItem

(seqCollapsed, seqExpanded, (blockCount == 1)),

false

);

static CRef< CScope > m_Scope

void AddItem(ITextItem *item, bool updatePositions=true)

virtual EJobState x_Run()

vector< pair< objects::CBioseq_Handle, string > > m_Handles

virtual ~CFastaRetrieveJob()

CFastaRetrieveJob(CTextPanelContext &context, const vector< pair< objects::CBioseq_Handle, string > > &handles)

void x_DumpBioseq(const objects::CBioseq_Handle &h)

virtual EJobState x_Run()

CConstRef< objects::CSeq_loc > m_Loc

CFastaRetrieveLocJob(CTextPanelContext &context, const objects::CSeq_loc &loc, objects::CScope &scope)

CRef< objects::CScope > m_Scope

virtual ~CFastaRetrieveLocJob()

Seq-loc iterator class – iterates all intervals from a seq-loc in the correct order.

void x_CheckCancelled() const

void x_AddItem(ITextItem *item)

const int kFastaSeqBlockSize

unsigned int TSeqPos

Type for sequence locations and lengths.

EJobState

Job states (describe FSM)

TSeqPos GetBioseqLength(void) const

position_type GetLength(void) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TFrom GetFrom(void) const

Get the From member data.

static CS_CONTEXT * context

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