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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/fasta__exception_8hpp_source.html below:

NCBI C++ ToolKit: include/objtools/readers/fasta_exception.hpp Source File

vector<TSeqPos> & badIndexesOnLine,

( ! badIndexesOnLine.empty() ) {

maxRanges = 1000 )

;

& message,

const SBadResiduePositions & GetBadResiduePositions(void) const THROWS_NONE

CBadResiduesException()=delete

EErrCode GetErrCode(void) const

bool empty(void) const THROWS_NONE

SBadResiduePositions m_BadResiduePositions

CBadResiduesException(const CBadResiduesException &)=default

CBadResiduesException(const CDiagCompileInfo &info, const CException *prev_exception, EErrCode err_code, const string &message, const SBadResiduePositions &badResiduePositions, EDiagSev severity=eDiag_Error)

void ReportExtra(ostream &out) const override

Report "non-standard" attributes.

const CException * x_Clone(void) const override

Helper method for cloning the exception.

virtual const char * GetErrCodeString(void) const override

Get error code interpreted as text.

Incapsulate compile time information such as __FILE__, __LINE__, NCBI_MODULE, current function.

std::ofstream out("events_result.xml")

main entry point for tests

EDiagSev

Severity level for the posted diagnostics.

@ eDiag_Error

Error message.

virtual int x_GetErrCode(void) const

Helper method for getting error code.

#define THROWS_NONE

Do not use 'throw' dynamic exception specification for C++11 compilers.

EErrCode

Error types that an application can generate.

virtual const char * GetErrCodeString(void) const

Get error code interpreted as text.

@ eInvalid

To be used ONLY as a return value; please, NEVER throw an exception with this code.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

IO_PREFIX::ostream CNcbiOstream

Portable alias for ostream.

Defines NCBI C++ exception handling.

Portable reference counted smart and weak pointers using CWeakRef, CRef, CObject and CObjectEx.

void AddBadIndexMap(const TBadIndexMap &additionalBadIndexMap)

SBadResiduePositions()=default

void ConvertBadIndexesToString(CNcbiOstream &out, unsigned int maxRanges=1000) const

CConstRef< CSeq_id > m_SeqId

SBadResiduePositions(const SBadResiduePositions &)=default

TBadIndexMap m_BadIndexMap

SBadResiduePositions(CConstRef< CSeq_id > seqId, const vector< TSeqPos > &badIndexesOnLine, int lineNum)

map< int, vector< TSeqPos > > TBadIndexMap

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