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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/fasta__align__export__job_8cpp_source.html below:

NCBI C++ ToolKit: src/gui/packages/pkg_alignment/fasta_align_export_job.cpp Source File

Go to the SVN repository for this file.

:

(

), m_Params(params)

err_msg =

;

bool WriteAlign(const CSeq_align &align, const string &name="", const string &descr="") override

Write a raw Seq-align to the internal output stream.

CAppJobError Default implementation for IAppJobError - encapsulates a text error message.

CAppJob - default implementation of IAppJob that could be used as a base class.

virtual EJobState Run()

Function that does all the useful work, called by the Engine.

CFastaAlignExportParams m_Params

CFastaAlignExportJob(const CFastaAlignExportParams &params)

wxString GetFileName() const

const SConstScopedObject & GetObject() const

USING_SCOPE(ncbi::objects)

#define LOG_POST(message)

This macro is deprecated and it's strongly recomended to move in all projects (except tests) to macro...

const string & GetMsg(void) const

Get message string.

void Info(CExceptionArgs_Base &args)

CRef< CAppJobError > m_Error

CRef< objects::CScope > scope

string m_Descr

mutex to sync our internals

EJobState

Job states (describe FSM)

CConstRef< CObject > object

TObjectType * GetPointer(void) const THROWS_NONE

Get pointer,.

void Reset(void)

Reset reference object.

TObjectType & GetObject(void)

Get object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

IO_PREFIX::ofstream CNcbiOfstream

Portable alias for ofstream.

Defines classes: CDirEntry, CFile, CDir, CSymLink, CMemoryFile, CFileUtil, CFileLock,...

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