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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/external__annots_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/edit/external_annots.cpp Source File

(seq_entry.IsNull()) {

(seq_entry->IsSeq()) {

x_AddAnnotations(sel, scope, seq_entry->SetSeq());

AddAnnotations(sel, scope, sub_entry);

(; annot_it; ++annot_it) {

bioseq.

().push_back(new_annot);

new_annot->

().push_back(

);

(; feat_it; ++feat_it) {

new_annot->

().SetFtable().push_back(feat);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

static CRef< CSeq_annot > x_GetCompleteSeqAnnot(const CSeq_annot_Handle &annot_handle)

static void x_AddAnnotations(const SAnnotSelector &sel, CScope &scope, CBioseq &bioseq)

const CSeq_id * GetFirstId() const

namespace ncbi::objects::

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CConstRef< CSeq_annot > GetCompleteSeq_annot(void) const

Complete and return const reference to the current seq-annot.

const CSeq_feat & GetMappedFeature(void) const

Feature mapped to the master sequence.

CRef< C > Ref(C *object)

Helper functions to get CRef<> and CConstRef<> objects.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

void SetData(TData &value)

Assign a value to Data data member.

void SetName(const TName &value)

Assign a value to Name data member.

void SetDesc(TDesc &value)

Assign a value to Desc data member.

const TName & GetName(void) const

Get the Name member data.

bool IsSetName(void) const

source if "other" above Check if a value has been assigned to Name data member.

TAnnot & SetAnnot(void)

Assign a value to Annot data member.

bool IsSetDb(void) const

Check if a value has been assigned to Db data member.

const TDesc & GetDesc(void) const

Get the Desc member data.

bool IsSetDesc(void) const

used only for stand alone Seq-annots Check if a value has been assigned to Desc data member.

bool IsSetId(void) const

Check if a value has been assigned to Id data member.

void SetDb(TDb value)

Assign a value to Db data member.

TDb GetDb(void) const

Get the Db member data.

const TId & GetId(void) const

Get the Id member data.

TId & SetId(void)

Assign a value to Id data member.

Defines the CNcbiApplication and CAppException classes for creating NCBI applications.

Defines command line argument related classes.

Defines unified interface to application:

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