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NCBI C++ ToolKit: src/gui/packages/pkg_sequence_edit/extend_partial_features.cpp Source File

(parent,

, caption, pos,

, style);

SetExtraStyle(wxWS_EX_BLOCK_EVENTS);

GetSizer()->SetSizeHints(

);

wxBoxSizer* itemBoxSizer2 =

wxBoxSizer(wxVERTICAL);

itemCBulkCmdDlg1->SetSizer(itemBoxSizer2);

itemBoxSizer2->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxBoxSizer* itemBoxSizer4 =

wxBoxSizer(wxHORIZONTAL);

itemBoxSizer2->Add(itemBoxSizer4, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

=

wxCheckBox( itemCBulkCmdDlg1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer4->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

=

wxCheckBox( itemCBulkCmdDlg1,

,

(

), wxDefaultPosition, wxDefaultSize, 0 );

itemBoxSizer4->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

wxPanel *container1 =

wxPanel( itemCBulkCmdDlg1,

, wxDefaultPosition, wxSize(800,260), 0 );

wxBoxSizer* itemBoxSizer5 =

wxBoxSizer(wxHORIZONTAL);

container1->SetSizer(itemBoxSizer5);

vector<CFieldNamePanel::EFieldType> field_types;

wxPanel *container2 =

wxPanel( itemCBulkCmdDlg1,

, wxDefaultPosition, wxSize(800,90), 0 );

itemBoxSizer2->Add(container2, 0, wxALIGN_LEFT|wxALL|

, 0);

wxBoxSizer* itemBoxSizer6 =

wxBoxSizer(wxHORIZONTAL);

container2->SetSizer(itemBoxSizer6);

itemBoxSizer2->Add(

, 0, wxALIGN_CENTER_HORIZONTAL|wxALL, 5);

field_name =

;

(objs.size() == 0) {

wxMessageBox(

(

),

(

),

wxOK | wxICON_ERROR,

);

any_change =

;

(

->IsSetData() &&

->GetData().IsCdregion() &&

->IsSetExcept_text() &&

(

->GetExcept_text(),

) != string::npos)

& loc =

->GetLocation();

edit::CLocationEditPolicy::Extend5(*new_feat, scope);

edit::CLocationEditPolicy::Extend3(*new_feat, scope);

(retranslate_cmd) {

->AddCommand(*retranslate_cmd);

wxMessageBox(

(

),

(

),

wxOK | wxICON_ERROR,

);

& loc = fi->GetLocation();

new_feat->

(fi->GetOriginalFeature());

edit::CLocationEditPolicy::Extend3(*new_feat, scope);

edit::CLocationEditPolicy::Extend5(*new_feat, scope);

edit::CLocationEditPolicy::Extend5(*new_feat, scope);

edit::CLocationEditPolicy::Extend3(*new_feat, scope);

(extend_up || extend_down)

@ eExtreme_Positional

numerical value

@ eExtreme_Biological

5' and 3'

#define ID_EFL_FEATURETYPE

bool IsGeneralIdProtPresent(objects::CSeq_entry_Handle tse)

objects::CSeq_entry_Handle m_TopSeqEntry

bool Create(wxWindow *parent, wxWindowID id, const wxString &title, const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxDefaultSize, long style=wxDEFAULT_FRAME_STYLE, const wxString &name=wxFrameNameStr)

bool GetTopLevelSeqEntryAndProcessor()

ICommandProccessor * m_CmdProccessor

void UpdateChildrenFeaturePanels(wxSizer *sizer)

~CExtendPartialFeatDlg()

Destructor.

virtual string GetErrorMessage()

static CRef< CCmdComposite > ExtendCDS(CSeq_entry_Handle seh)

wxCheckBox * m_Extend3Btn

COkCancelPanel * m_OkCancel

static bool ShowToolTips()

Should we show tooltips?

virtual CRef< CCmdComposite > GetCommand()

static bool Is3AtEndOfSeq(const CSeq_loc &loc, CBioseq_Handle bsh)

static bool Is5AtStartOfSeq(const CSeq_loc &loc, CBioseq_Handle bsh)

CFieldChoicePanel * m_FieldType

void Init()

Initialises member variables.

CExtendPartialFeatDlg()

Constructors.

bool Create(wxWindow *parent, wxWindowID id=10268, const wxString &caption=_("Extend Partial Features"), const wxPoint &pos=wxDefaultPosition, const wxSize &size=wxSize(900, 500), long style=wxCAPTION|wxRESIZE_BORDER|wxSYSTEM_MENU|wxCLOSE_BOX|wxTAB_TRAVERSAL)

Creation.

wxCheckBox * m_Extend5Btn

void ProcessUpdateFeatEvent(wxCommandEvent &event)

CStringConstraintPanel * m_StringConstraintPanel

void CreateControls()

Creates the controls and sizers.

CFeatureTypePanel * m_FeatureType

wxBitmap GetBitmapResource(const wxString &name)

Retrieves bitmap resources.

wxIcon GetIconResource(const wxString &name)

Retrieves icon resources.

virtual bool SetFieldName(const string &field)

virtual string GetFieldName(const bool subfield=false)

Returns the name of the field as selected in the panel.

void ListPresentFeaturesFirst(const objects::CSeq_entry_Handle &entry, vector< const objects::CFeatListItem * > *featlist=nullptr)

virtual string GetFieldName(const bool subfield=false)

Returns the name of the field as selected in the panel.

bool SetFieldType(CFieldNamePanel::EFieldType field_type, bool is_pair=false)

vector< CConstRef< CObject > > GetObjects(objects::CBioseq_Handle bsh)

namespace ncbi::objects::

CRef< edit::CStringConstraint > GetStringConstraint()

virtual void Execute(IEditCommand *command, wxWindow *window=0)=0

IWorkbench is the central interface in the application framework.

USING_SCOPE(ncbi::objects)

const string kPartialStart

#define EVT_UPDATE_FEATURE_LIST(id, fn)

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

bool IsPartialStart(ESeqLocExtremes ext) const

check start or stop of location for e_Lim fuzz

ENa_strand GetStrand(void) const

Get the location's strand.

TSeqPos GetStart(ESeqLocExtremes ext) const

Return start and stop positions of the seq-loc.

bool IsSetStrand(EIsSetStrand flag=eIsSetStrand_Any) const

Check if strand is set for any/all part(s) of the seq-loc depending on the flag.

bool IsPartialStop(ESeqLocExtremes ext) const

TSeqPos GetStop(ESeqLocExtremes ext) const

CBioseq_Handle GetBioseqHandle(const CSeq_id &id)

Get bioseq handle by seq-id.

CSeq_feat_Handle GetSeq_featHandle(const CSeq_feat &feat, EMissing action=eMissing_Default)

TInst_Length GetInst_Length(void) const

CScope & GetScope(void) const

Get scope this handle belongs to.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static bool IsBlank(const CTempString str, SIZE_TYPE pos=0)

Check if a string is blank (has no text).

static SIZE_TYPE Find(const CTempString str, const CTempString pattern, ECase use_case=eCase, EDirection direction=eForwardSearch, SIZE_TYPE occurrence=0)

Find the pattern in the string.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

bool IsCdregion(void) const

Check if variant Cdregion is selected.

const TData & GetData(void) const

Get the Data member data.

bool IsSetProduct(void) const

product of process Check if a value has been assigned to Product data member.

ENa_strand

strand of nucleic acid

const struct ncbi::grid::netcache::search::fields::SIZE size

CRef< CCmdComposite > GetRetranslateCDSCommand(objects::CScope &scope, const objects::CSeq_feat &cds, bool create_general_only)

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